Wall clock time and date at job start Fri Apr 10 2020 22:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99675 * 2 1 4 4 H 1.48502 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47147 * 299.99710 * 3 2 1 6 6 H 1.48497 * 109.47337 * 59.99444 * 3 2 1 7 7 C 1.38808 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99957 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00195 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99976 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47192 * 174.36907 * 10 9 7 12 12 C 1.52994 * 115.54890 * 294.94951 * 11 10 9 13 13 C 1.52998 * 109.47403 * 279.32651 * 12 11 10 14 14 N 1.46500 * 109.47646 * 175.45852 * 13 12 11 15 15 C 1.34769 * 120.00334 * 179.97438 * 14 13 12 16 16 O 1.21286 * 120.00032 * 0.02562 * 15 14 13 17 17 C 1.50705 * 120.00147 * 179.97438 * 15 14 13 18 18 H 1.08998 * 109.46653 * 15.00581 * 17 15 14 19 19 F 1.39897 * 109.47175 * 255.00356 * 17 15 14 20 20 C 1.52996 * 109.46763 * 135.00187 * 17 15 14 21 21 F 1.39906 * 109.47163 * 60.00773 * 20 17 15 22 22 F 1.39897 * 109.47413 * 300.00023 * 20 17 15 23 23 F 1.39898 * 109.46823 * 179.97438 * 20 17 15 24 24 C 1.53001 * 117.51636 * 80.65055 * 11 10 9 25 25 C 1.53000 * 117.50149 * 149.27962 * 11 10 9 26 26 H 0.96996 * 120.00495 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99591 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.47662 * 54.36511 * 10 9 7 29 29 H 1.09001 * 109.46916 * 294.36775 * 10 9 7 30 30 H 1.09000 * 109.47134 * 159.32478 * 12 11 10 31 31 H 1.09006 * 109.47191 * 39.32473 * 12 11 10 32 32 H 1.09001 * 109.47139 * 55.44870 * 13 12 11 33 33 H 1.09006 * 109.47022 * 295.45542 * 13 12 11 34 34 H 0.97007 * 119.99550 * 359.97438 * 14 13 12 35 35 H 1.09004 * 117.49434 * 214.97078 * 24 11 10 36 36 H 1.08997 * 117.50240 * 359.97438 * 24 11 10 37 37 H 1.09008 * 117.49546 * 359.97352 * 25 11 10 38 38 H 1.08997 * 117.50272 * 144.99826 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0701 -4.8162 0.1421 12 6 0.3085 -4.8761 1.4676 13 6 1.1966 -5.5142 2.5377 14 7 0.5093 -5.4733 3.8309 15 6 1.1051 -5.9827 4.9271 16 8 2.2105 -6.4747 4.8432 17 6 0.3983 -5.9401 6.2575 18 1 -0.6572 -5.7174 6.1011 19 9 0.9710 -4.9461 7.0582 20 6 0.5359 -7.2965 6.9517 21 9 1.8907 -7.5823 7.1524 22 9 -0.0368 -8.2905 6.1510 23 9 -0.1197 -7.2568 8.1869 24 6 0.3326 -5.2742 -1.1178 25 6 1.4401 -6.1447 -0.5207 26 1 -0.4851 0.8400 -0.0004 27 1 0.3557 -2.3880 0.0005 28 1 2.7585 -3.6720 0.8357 29 1 2.6071 -3.7593 -0.9356 30 1 -0.5944 -5.4734 1.3413 31 1 0.0362 -3.8667 1.7761 32 1 2.1347 -4.9635 2.6071 33 1 1.4026 -6.5502 2.2685 34 1 -0.3747 -5.0794 3.8980 35 1 -0.6953 -5.6182 -1.0021 36 1 0.5509 -4.7492 -2.0477 37 1 2.3874 -6.1924 -1.0579 38 1 1.1410 -7.0613 -0.0123 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164596590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:36 Heat of formation + Delta-G solvation = -201.879923 kcal Electronic energy + Delta-G solvation = -26148.600831 eV Core-core repulsion = 21526.809500 eV Total energy + Delta-G solvation = -4621.791331 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.69142 -48.79006 -48.07883 -47.89373 -40.01698 -38.36357 -35.25299 -33.97066 -31.88929 -30.81553 -29.82565 -26.09569 -25.03226 -23.26918 -22.79493 -21.86341 -21.30838 -19.50424 -19.18320 -18.88163 -18.45294 -17.60030 -17.10916 -16.94876 -15.99802 -15.64358 -15.10539 -15.08269 -14.90378 -14.78782 -14.61014 -14.47191 -14.39285 -14.25497 -14.16190 -14.11037 -13.45040 -13.23403 -13.13237 -12.76325 -12.33491 -12.06737 -11.99903 -11.58716 -11.21692 -11.02871 -10.88316 -10.73398 -10.34325 -10.14498 -9.95144 -9.72445 -9.41114 -9.38858 -8.89693 -6.94444 -5.80086 -3.08112 1.60433 1.94598 2.44513 2.99463 3.39550 3.41306 3.45049 3.47792 3.49417 3.82063 3.97408 4.05226 4.38165 4.58432 4.89584 4.97285 5.04625 5.19372 5.39881 5.51202 5.56546 5.60596 5.84592 5.90422 6.07542 6.15043 6.16988 6.35156 6.39901 6.44052 6.69334 6.77705 6.94549 7.58326 7.68248 8.39115 9.51081 10.08487 10.44173 11.42764 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.003129 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.666643 B = 8947.587139 C =10156.724851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.187 3.813 11 C -0.121 4.121 12 C -0.092 4.092 13 C 0.121 3.879 14 N -0.704 5.704 15 C 0.491 3.509 16 O -0.496 6.496 17 C 0.039 3.961 18 H 0.146 0.854 19 F -0.151 7.151 20 C 0.447 3.553 21 F -0.154 7.154 22 F -0.168 7.168 23 F -0.169 7.169 24 C -0.163 4.163 25 C -0.177 4.177 26 H 0.254 0.746 27 H 0.385 0.615 28 H 0.026 0.974 29 H 0.017 0.983 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.407 0.593 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.026 -16.694 10.714 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.372 5.372 10 C 0.060 3.940 11 C -0.122 4.122 12 C -0.130 4.130 13 C -0.001 4.001 14 N -0.355 5.355 15 C 0.271 3.729 16 O -0.370 6.370 17 C -0.002 4.002 18 H 0.164 0.836 19 F -0.132 7.132 20 C 0.392 3.608 21 F -0.136 7.136 22 F -0.149 7.149 23 F -0.150 7.150 24 C -0.200 4.200 25 C -0.215 4.215 26 H 0.064 0.936 27 H 0.218 0.782 28 H 0.044 0.956 29 H 0.035 0.965 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.242 0.758 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.034 -16.933 10.666 20.240 hybrid contribution -0.329 1.112 0.221 1.180 sum -3.362 -15.821 10.886 19.497 Atomic orbital electron populations 1.69662 1.05070 1.25497 1.57991 1.24708 0.95511 0.97612 1.03053 0.86141 0.78870 0.84165 0.77181 1.20552 1.21885 1.21876 1.19284 0.91084 0.84148 1.42427 0.91192 1.42298 1.05887 0.99656 1.89362 1.20183 0.91867 0.84158 0.97794 1.21560 1.01876 0.96175 0.92614 1.21270 0.96838 1.02441 0.92417 1.21575 0.96758 1.01754 0.79997 1.45982 1.21544 1.59558 1.08440 1.19979 0.87034 0.80911 0.84941 1.90862 1.18203 1.43062 1.84856 1.22765 1.02822 0.84749 0.89908 0.83631 1.93041 1.86618 1.60163 1.73329 1.20313 0.75518 0.87138 0.77850 1.93319 1.31178 1.94200 1.94856 1.93248 1.84674 1.63740 1.73227 1.93255 1.81077 1.96611 1.44089 1.22968 0.96464 1.02967 0.97595 1.22991 1.00161 0.93939 1.04415 0.93613 0.78168 0.95569 0.96485 0.91651 0.89177 0.90169 0.90931 0.75827 0.89258 0.88519 0.88852 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.42 13.06 55.49 0.72 -26.69 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -17.59 5.30 -59.91 -0.32 -17.91 16 10 C 0.19 3.62 6.10 -4.04 -0.02 3.59 16 11 C -0.12 -1.79 1.52 -154.51 -0.23 -2.03 16 12 C -0.09 -1.17 5.24 -26.73 -0.14 -1.31 16 13 C 0.12 1.48 5.51 -4.04 -0.02 1.46 16 14 N -0.70 -7.21 5.56 -60.29 -0.33 -7.55 16 15 C 0.49 5.79 6.91 -10.99 -0.08 5.71 16 16 O -0.50 -7.80 15.61 5.55 0.09 -7.72 16 17 C 0.04 0.35 3.78 -27.88 -0.11 0.24 16 18 H 0.15 0.60 7.99 -51.93 -0.42 0.19 16 19 F -0.15 -1.66 17.03 2.25 0.04 -1.62 16 20 C 0.45 4.43 2.86 37.16 0.11 4.54 16 21 F -0.15 -1.94 15.95 2.25 0.04 -1.91 16 22 F -0.17 -1.62 17.02 2.25 0.04 -1.58 16 23 F -0.17 -1.58 17.30 2.25 0.04 -1.54 16 24 C -0.16 -2.22 9.90 -26.73 -0.26 -2.49 16 25 C -0.18 -2.18 9.57 -26.73 -0.26 -2.44 16 26 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.38 9.70 7.46 -40.82 -0.30 9.39 16 28 H 0.03 0.52 7.69 -51.93 -0.40 0.12 16 29 H 0.02 0.35 8.09 -51.93 -0.42 -0.08 16 30 H 0.06 0.70 7.94 -51.93 -0.41 0.28 16 31 H 0.09 1.36 7.64 -51.93 -0.40 0.97 16 32 H 0.08 1.17 7.69 -51.93 -0.40 0.77 16 33 H 0.07 0.85 7.80 -51.93 -0.41 0.45 16 34 H 0.41 2.93 8.37 -40.82 -0.34 2.58 16 35 H 0.09 1.08 8.08 -51.93 -0.42 0.66 16 36 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 38 H 0.09 0.95 7.98 -51.93 -0.41 0.54 16 LS Contribution 343.71 15.07 5.18 5.18 Total: -1.00 -32.39 343.71 -5.52 -37.90 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -4.72 Total: 6.16 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.26 Total: 0.15 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.07 Total: -52.15 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.09 Total: -7.72 kcal Atomic # 9 Polarization: -6.80 SS G_CDS: 0.15 Total: -6.65 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.39 -5.52 -37.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164596590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.979 kcal (2) G-P(sol) polarization free energy of solvation -32.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds