Wall clock time and date at job start Fri Apr 10 2020 22:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99675 * 2 1 4 4 H 1.48502 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47147 * 299.99710 * 3 2 1 6 6 H 1.48497 * 109.47337 * 59.99444 * 3 2 1 7 7 C 1.38808 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99957 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00195 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99976 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47192 * 174.36907 * 10 9 7 12 12 C 1.52994 * 115.54890 * 294.94951 * 11 10 9 13 13 C 1.52998 * 109.47403 * 279.32651 * 12 11 10 14 14 N 1.46500 * 109.47646 * 175.45852 * 13 12 11 15 15 C 1.34769 * 120.00334 * 179.97438 * 14 13 12 16 16 O 1.21286 * 120.00032 * 0.02562 * 15 14 13 17 17 C 1.50705 * 120.00147 * 179.97438 * 15 14 13 18 18 H 1.08998 * 109.46653 * 15.00581 * 17 15 14 19 19 F 1.39897 * 109.47175 * 255.00356 * 17 15 14 20 20 C 1.52996 * 109.46763 * 135.00187 * 17 15 14 21 21 F 1.39906 * 109.47163 * 60.00773 * 20 17 15 22 22 F 1.39897 * 109.47413 * 300.00023 * 20 17 15 23 23 F 1.39898 * 109.46823 * 179.97438 * 20 17 15 24 24 C 1.53001 * 117.51636 * 80.65055 * 11 10 9 25 25 C 1.53000 * 117.50149 * 149.27962 * 11 10 9 26 26 H 0.96996 * 120.00495 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99591 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.47662 * 54.36511 * 10 9 7 29 29 H 1.09001 * 109.46916 * 294.36775 * 10 9 7 30 30 H 1.09000 * 109.47134 * 159.32478 * 12 11 10 31 31 H 1.09006 * 109.47191 * 39.32473 * 12 11 10 32 32 H 1.09001 * 109.47139 * 55.44870 * 13 12 11 33 33 H 1.09006 * 109.47022 * 295.45542 * 13 12 11 34 34 H 0.97007 * 119.99550 * 359.97438 * 14 13 12 35 35 H 1.09004 * 117.49434 * 214.97078 * 24 11 10 36 36 H 1.08997 * 117.50240 * 359.97438 * 24 11 10 37 37 H 1.09008 * 117.49546 * 359.97352 * 25 11 10 38 38 H 1.08997 * 117.50272 * 144.99826 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0701 -4.8162 0.1421 12 6 0.3085 -4.8761 1.4676 13 6 1.1966 -5.5142 2.5377 14 7 0.5093 -5.4733 3.8309 15 6 1.1051 -5.9827 4.9271 16 8 2.2105 -6.4747 4.8432 17 6 0.3983 -5.9401 6.2575 18 1 -0.6572 -5.7174 6.1011 19 9 0.9710 -4.9461 7.0582 20 6 0.5359 -7.2965 6.9517 21 9 1.8907 -7.5823 7.1524 22 9 -0.0368 -8.2905 6.1510 23 9 -0.1197 -7.2568 8.1869 24 6 0.3326 -5.2742 -1.1178 25 6 1.4401 -6.1447 -0.5207 26 1 -0.4851 0.8400 -0.0004 27 1 0.3557 -2.3880 0.0005 28 1 2.7585 -3.6720 0.8357 29 1 2.6071 -3.7593 -0.9356 30 1 -0.5944 -5.4734 1.3413 31 1 0.0362 -3.8667 1.7761 32 1 2.1347 -4.9635 2.6071 33 1 1.4026 -6.5502 2.2685 34 1 -0.3747 -5.0794 3.8980 35 1 -0.6953 -5.6182 -1.0021 36 1 0.5509 -4.7492 -2.0477 37 1 2.3874 -6.1924 -1.0579 38 1 1.1410 -7.0613 -0.0123 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164596590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:35 Heat of formation + Delta-G solvation = -223.615356 kcal Electronic energy + Delta-G solvation = -26149.543350 eV Core-core repulsion = 21526.809500 eV Total energy + Delta-G solvation = -4622.733850 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.120 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.47514 -49.57761 -48.85582 -48.71496 -40.98695 -39.53977 -36.32543 -35.79684 -32.77682 -32.72919 -30.78320 -27.82866 -25.97207 -24.62877 -24.22838 -22.95739 -22.21707 -20.42748 -19.98435 -19.82364 -19.51857 -19.00201 -18.42016 -17.81212 -16.93809 -16.82977 -16.48321 -16.08975 -15.95395 -15.69587 -15.60797 -15.50694 -15.38834 -15.24675 -15.07201 -14.97065 -14.94141 -14.74017 -14.19297 -14.07190 -13.82923 -13.20532 -13.03954 -12.81848 -12.74983 -12.57041 -12.26047 -12.12095 -11.93955 -11.84785 -11.34006 -11.08085 -10.89619 -10.57126 -10.34942 -8.96474 -7.94718 -5.21755 0.77546 1.09171 1.46952 1.47799 1.57189 1.61513 2.23604 2.54388 2.65622 2.72243 2.89912 3.11747 3.33730 3.38832 3.66328 3.83573 3.85431 3.97671 4.07826 4.23159 4.39846 4.48711 4.62608 4.86431 4.89819 4.96407 5.08267 5.11379 5.25138 5.28605 5.36245 5.39938 5.50296 6.10119 6.28340 6.75689 7.35916 8.11836 8.37854 9.28497 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.003129 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.666643 B = 8947.587139 C =10156.724851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.068 4.068 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.187 3.813 11 C -0.141 4.141 12 C -0.079 4.079 13 C 0.128 3.872 14 N -0.691 5.691 15 C 0.487 3.513 16 O -0.542 6.542 17 C 0.045 3.955 18 H 0.202 0.798 19 F -0.163 7.163 20 C 0.447 3.553 21 F -0.175 7.175 22 F -0.165 7.165 23 F -0.164 7.164 24 C -0.164 4.164 25 C -0.151 4.151 26 H 0.251 0.749 27 H 0.378 0.622 28 H 0.018 0.982 29 H 0.010 0.990 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.423 0.577 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.994 -17.679 10.954 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.261 4.261 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.377 4.377 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.061 3.939 11 C -0.142 4.142 12 C -0.116 4.116 13 C 0.006 3.994 14 N -0.343 5.343 15 C 0.269 3.731 16 O -0.419 6.419 17 C 0.004 3.996 18 H 0.218 0.782 19 F -0.143 7.143 20 C 0.392 3.608 21 F -0.156 7.156 22 F -0.146 7.146 23 F -0.146 7.146 24 C -0.201 4.201 25 C -0.188 4.188 26 H 0.060 0.940 27 H 0.210 0.790 28 H 0.036 0.964 29 H 0.028 0.972 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.262 0.738 35 H 0.129 0.871 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.009 -17.930 10.904 21.365 hybrid contribution 0.009 1.366 0.111 1.371 sum -4.000 -16.564 11.015 20.290 Atomic orbital electron populations 1.69790 1.06275 1.25904 1.59455 1.25426 0.96357 1.00586 1.03723 0.85181 0.78163 0.80325 0.76747 1.19581 1.21983 1.21936 1.19619 0.91306 0.85602 1.41211 0.91347 1.42427 1.05685 1.00551 1.89105 1.20237 0.92716 0.84182 0.96792 1.21418 1.02304 0.96080 0.94394 1.21131 0.97701 1.01504 0.91300 1.21380 0.95594 1.01723 0.80752 1.45861 1.22048 1.58817 1.07574 1.20448 0.86587 0.80032 0.86044 1.90843 1.20281 1.45071 1.85712 1.22953 1.05135 0.83846 0.87644 0.78169 1.93017 1.87135 1.60625 1.73538 1.20439 0.74673 0.87619 0.78111 1.93279 1.32902 1.94413 1.95010 1.93251 1.84478 1.63775 1.73137 1.93265 1.80813 1.96611 1.43861 1.23011 0.98068 1.03038 0.95958 1.23074 0.99682 0.93421 1.02658 0.93980 0.78973 0.96406 0.97209 0.88476 0.91844 0.93214 0.89873 0.73826 0.87108 0.90410 0.88826 0.86430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.14 13.06 21.65 0.28 -56.85 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 3 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.25 -13.57 9.99 84.03 0.84 -12.73 16 8 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 9 N -0.73 -36.03 5.30 -343.46 -1.82 -37.85 16 10 C 0.19 7.29 6.10 86.38 0.53 7.82 16 11 C -0.14 -3.99 1.52 -52.18 -0.08 -4.07 16 12 C -0.08 -1.87 5.24 30.59 0.16 -1.71 16 13 C 0.13 2.96 5.51 86.38 0.48 3.44 16 14 N -0.69 -12.82 5.56 -463.05 -2.57 -15.39 16 15 C 0.49 10.81 6.91 87.66 0.61 11.42 16 16 O -0.54 -16.95 15.61 -3.05 -0.05 -16.99 16 17 C 0.04 0.70 3.78 29.85 0.11 0.81 16 18 H 0.20 0.84 7.99 -2.39 -0.02 0.82 16 19 F -0.16 -3.33 17.03 44.97 0.77 -2.57 16 20 C 0.45 8.17 2.86 71.98 0.21 8.38 16 21 F -0.17 -4.35 15.95 44.97 0.72 -3.63 16 22 F -0.17 -2.88 17.02 44.97 0.77 -2.12 16 23 F -0.16 -2.77 17.30 44.97 0.78 -1.99 16 24 C -0.16 -4.15 9.90 30.59 0.30 -3.84 16 25 C -0.15 -3.31 9.57 30.59 0.29 -3.02 16 26 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 27 H 0.38 19.35 7.46 -92.71 -0.69 18.65 16 28 H 0.02 0.73 7.69 -2.39 -0.02 0.71 16 29 H 0.01 0.40 8.09 -2.39 -0.02 0.38 16 30 H 0.10 1.72 7.94 -2.39 -0.02 1.70 16 31 H 0.06 1.88 7.64 -2.38 -0.02 1.86 16 32 H 0.05 1.46 7.69 -2.39 -0.02 1.45 16 33 H 0.08 1.77 7.80 -2.38 -0.02 1.75 16 34 H 0.42 4.90 8.37 -92.70 -0.78 4.13 16 35 H 0.11 2.33 8.08 -2.39 -0.02 2.31 16 36 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.12 1.99 7.98 -2.39 -0.02 1.97 16 Total: -1.00 -71.33 343.71 4.46 -66.87 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -0.35 Total: 19.66 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 3.91 Total: 3.09 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -4.11 Total: -110.10 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.05 Total: -16.99 kcal Atomic # 9 Polarization: -13.34 SS G_CDS: 3.03 Total: -10.31 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -71.33 4.46 -66.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164596590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.743 kcal (2) G-P(sol) polarization free energy of solvation -71.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds