Wall clock time and date at job start Fri Apr 10 2020 22:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86803 * 120.00314 * 2 1 4 4 H 1.48497 * 109.46776 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46845 * 300.00083 * 3 2 1 6 6 H 1.48497 * 109.46864 * 60.00152 * 3 2 1 7 7 C 1.38628 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99843 * 179.97438 * 7 2 1 9 9 O 1.34813 * 120.00262 * 359.97438 * 7 2 1 10 10 C 1.35811 * 117.00196 * 185.06131 * 9 7 2 11 11 C 1.39455 * 120.40316 * 354.52705 * 10 9 7 12 12 C 1.38206 * 118.44609 * 179.97438 * 11 10 9 13 13 C 1.39168 * 119.17585 * 359.97438 * 12 11 10 14 14 N 1.39116 * 119.63211 * 179.97438 * 13 12 11 15 15 C 1.46505 * 120.00295 * 0.02562 * 14 13 12 16 16 C 1.52995 * 109.47045 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47091 * 179.97438 * 16 15 14 18 18 O 1.21255 * 119.99536 * 0.02562 * 17 16 15 19 19 C 1.47168 * 120.00106 * 179.97438 * 17 16 15 20 20 C 1.39850 * 120.17123 * 359.73187 * 19 17 16 21 21 C 1.37888 * 119.82143 * 179.73782 * 20 19 17 22 22 C 1.38398 * 120.17250 * 0.53445 * 21 20 19 23 23 C 1.38406 * 120.35152 * 359.71783 * 22 21 20 24 24 C 1.37886 * 120.16964 * 0.02562 * 23 22 21 25 25 N 1.32383 * 120.73559 * 0.02862 * 13 12 11 26 26 C 1.31936 * 121.69310 * 359.97334 * 25 13 12 27 27 H 0.97007 * 119.99132 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.77658 * 0.25427 * 11 10 9 29 29 H 1.08001 * 120.41212 * 179.97438 * 12 11 10 30 30 H 0.97007 * 119.99745 * 180.02562 * 14 13 12 31 31 H 1.08993 * 109.46869 * 299.99532 * 15 14 13 32 32 H 1.09004 * 109.46796 * 59.99920 * 15 14 13 33 33 H 1.09000 * 109.47895 * 300.00177 * 16 15 14 34 34 H 1.09004 * 109.46921 * 60.00570 * 16 15 14 35 35 H 1.08003 * 120.08809 * 359.97438 * 20 19 17 36 36 H 1.08003 * 119.91235 * 180.27277 * 21 20 19 37 37 H 1.08008 * 119.82436 * 179.69742 * 22 21 20 38 38 H 1.07999 * 119.91723 * 179.97438 * 23 22 21 39 39 H 1.08000 * 120.08667 * 179.97438 * 24 23 22 40 40 H 1.07994 * 119.62314 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.7099 1.3462 -0.0006 5 1 1.8912 2.3964 -1.2125 6 1 1.8912 2.3963 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3681 0.0016 10 6 2.0703 -3.5047 0.1088 11 6 3.4637 -3.4474 0.0974 12 6 4.1721 -4.6287 0.2096 13 6 3.4765 -5.8281 0.3300 14 7 4.1801 -7.0229 0.4431 15 6 5.6451 -7.0139 0.4355 16 6 6.1646 -8.4464 0.5731 17 6 7.6716 -8.4373 0.5647 18 8 8.2708 -7.3884 0.4595 19 6 8.4158 -9.7012 0.6853 20 6 7.7283 -10.9122 0.8135 21 6 8.4327 -12.0927 0.9206 22 6 9.8166 -12.0800 0.9125 23 6 10.5044 -10.8851 0.7912 24 6 9.8143 -9.6967 0.6780 25 7 2.1528 -5.8448 0.3371 26 6 1.4451 -4.7363 0.2320 27 1 -0.4849 0.8402 0.0004 28 1 3.9771 -2.5015 0.0076 29 1 5.2521 -4.6213 0.2040 30 1 3.7006 -7.8620 0.5269 31 1 6.0009 -6.5866 -0.5019 32 1 6.0090 -6.4141 1.2697 33 1 5.8087 -8.8736 1.5107 34 1 5.8006 -9.0466 -0.2609 35 1 6.6483 -10.9232 0.8248 36 1 7.9032 -13.0292 1.0152 37 1 10.3628 -13.0076 1.0016 38 1 11.5844 -10.8833 0.7862 39 1 10.3523 -8.7650 0.5839 40 1 0.3665 -4.7887 0.2420 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170014711.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:42 Heat of formation + Delta-G solvation = 4.939725 kcal Electronic energy + Delta-G solvation = -23251.604095 eV Core-core repulsion = 19611.407102 eV Total energy + Delta-G solvation = -3640.196993 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.47881 -39.54414 -38.61173 -37.32330 -35.39107 -32.50747 -32.17911 -31.45122 -31.20002 -30.71410 -27.76926 -25.43249 -24.90218 -23.53056 -22.89366 -22.18223 -21.12197 -20.04410 -18.12558 -17.83246 -17.36813 -16.39963 -16.10749 -15.99505 -15.76594 -15.62744 -14.80609 -14.43017 -14.34802 -14.30092 -14.02026 -13.87417 -13.73115 -13.54322 -13.03264 -12.98750 -12.49399 -12.30356 -12.17004 -11.88677 -11.65834 -11.61363 -11.53539 -11.45719 -11.03870 -10.45109 -10.08862 -9.62261 -9.49293 -9.45711 -9.32201 -8.93949 -8.73244 -8.53279 -6.65424 -6.40197 -3.97220 0.22155 0.88356 2.02204 2.06495 2.43443 3.15130 3.16443 3.21700 3.26083 3.34449 3.92009 4.01703 4.30591 4.44629 4.52690 4.56022 4.68416 4.82295 4.83614 4.90303 5.05194 5.13195 5.23167 5.32671 5.38055 5.47161 5.49533 5.74889 5.75228 5.79374 5.83238 5.93074 5.95532 5.99793 6.03412 6.38536 6.55100 6.76290 7.12188 7.14681 7.20296 7.30410 7.67404 8.01108 8.12585 8.91536 9.05376 9.74833 10.77823 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.030711 B = 0.002011 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.509574 B =13920.883902 C =14807.133789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.389 4.389 8 H 0.089 0.911 9 O -0.178 6.178 10 C 0.065 3.935 11 C -0.155 4.155 12 C -0.182 4.182 13 C 0.308 3.692 14 N -0.742 5.742 15 C 0.147 3.853 16 C -0.177 4.177 17 C 0.401 3.599 18 O -0.445 6.445 19 C -0.168 4.168 20 C -0.073 4.073 21 C -0.134 4.134 22 C -0.090 4.090 23 C -0.134 4.134 24 C -0.062 4.062 25 N -0.501 5.501 26 C 0.067 3.933 27 H 0.269 0.731 28 H 0.136 0.864 29 H 0.118 0.882 30 H 0.395 0.605 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.248 -23.171 1.892 29.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.106 0.894 9 O -0.081 6.081 10 C 0.010 3.990 11 C -0.183 4.183 12 C -0.206 4.206 13 C 0.076 3.924 14 N -0.382 5.382 15 C 0.022 3.978 16 C -0.214 4.214 17 C 0.277 3.723 18 O -0.319 6.319 19 C -0.169 4.169 20 C -0.091 4.091 21 C -0.152 4.152 22 C -0.108 4.108 23 C -0.152 4.152 24 C -0.080 4.080 25 N -0.218 5.218 26 C -0.092 4.092 27 H 0.078 0.922 28 H 0.154 0.846 29 H 0.136 0.864 30 H 0.229 0.771 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 17.875 -23.065 1.880 29.241 hybrid contribution 0.838 1.161 -0.029 1.433 sum 18.713 -21.903 1.851 28.868 Atomic orbital electron populations 1.70059 1.05860 1.27408 1.46589 1.25245 0.95847 0.98693 0.96779 0.85668 0.79110 0.80560 0.78210 1.19185 1.20202 1.20194 1.21291 0.91645 0.80962 1.52736 0.89379 1.83991 1.33457 1.10940 1.79753 1.20252 0.90799 0.89688 0.98271 1.21421 0.93919 0.98509 1.04405 1.21140 0.99659 0.91674 1.08141 1.17853 0.88101 0.85852 1.00580 1.43819 1.03625 1.05805 1.84984 1.20875 0.80322 0.94527 1.02075 1.22171 0.93995 0.99896 1.05373 1.22304 0.90824 0.87589 0.71537 1.90566 1.72147 1.33715 1.35480 1.20535 0.94638 0.94868 1.06864 1.21521 1.00426 0.91518 0.95608 1.21185 0.94391 0.98344 1.01245 1.21465 0.94599 0.98307 0.96461 1.21194 1.00433 0.92312 1.01216 1.21481 0.93150 0.98986 0.94390 1.66904 1.05999 1.30798 1.18059 1.21438 0.99099 0.84891 1.03792 0.92159 0.84609 0.86445 0.77068 0.92020 0.92026 0.87522 0.87531 0.84802 0.85268 0.85550 0.85341 0.84793 0.83091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.44 13.67 55.48 0.76 -24.68 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.73 29.55 -169.99 -5.02 15.71 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.39 -10.93 9.50 30.88 0.29 -10.64 16 8 H 0.09 2.29 5.25 -52.49 -0.28 2.02 16 9 O -0.18 -5.09 9.77 -0.09 0.00 -5.09 16 10 C 0.07 1.60 6.67 -38.97 -0.26 1.34 16 11 C -0.16 -3.44 9.26 -39.14 -0.36 -3.80 16 12 C -0.18 -3.53 9.32 -39.25 -0.37 -3.89 16 13 C 0.31 5.80 7.65 -154.91 -1.19 4.62 16 14 N -0.74 -10.54 5.73 -60.38 -0.35 -10.89 16 15 C 0.15 1.75 4.18 -4.04 -0.02 1.73 16 16 C -0.18 -1.40 4.43 -27.88 -0.12 -1.53 16 17 C 0.40 3.83 7.12 -30.68 -0.22 3.61 16 18 O -0.44 -5.73 15.98 5.58 0.09 -5.64 16 19 C -0.17 -1.37 5.87 -105.06 -0.62 -1.98 16 20 C -0.07 -0.44 9.47 -39.11 -0.37 -0.81 16 21 C -0.13 -0.71 10.03 -39.65 -0.40 -1.11 16 22 C -0.09 -0.48 10.04 -39.46 -0.40 -0.87 16 23 C -0.13 -0.82 10.03 -39.65 -0.40 -1.22 16 24 C -0.06 -0.49 9.60 -39.11 -0.38 -0.87 16 25 N -0.50 -10.31 10.39 -12.25 -0.13 -10.44 16 26 C 0.07 1.48 11.14 -17.35 -0.19 1.29 16 27 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.14 2.95 5.75 -52.49 -0.30 2.65 16 29 H 0.12 1.99 6.70 -52.49 -0.35 1.64 16 30 H 0.40 4.88 8.60 -40.82 -0.35 4.53 16 31 H 0.06 0.80 7.88 -51.93 -0.41 0.39 16 32 H 0.06 0.80 7.88 -51.93 -0.41 0.39 16 33 H 0.11 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.11 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.13 0.53 7.05 -52.48 -0.37 0.16 16 36 H 0.13 0.41 8.06 -52.48 -0.42 -0.02 16 37 H 0.13 0.38 8.06 -52.48 -0.42 -0.04 16 38 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.13 1.08 7.65 -52.49 -0.40 0.68 16 40 H 0.15 3.14 8.06 -52.49 -0.42 2.71 16 LS Contribution 349.67 15.07 5.27 5.27 Total: -1.00 -33.75 349.67 -9.00 -42.75 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.54 Total: 6.18 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -5.08 Total: -13.16 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.29 Total: -46.01 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.75 -9.00 -42.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170014711.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.685 kcal (2) G-P(sol) polarization free energy of solvation -33.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds