Wall clock time and date at job start Fri Apr 10 2020 22:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86803 * 120.00314 * 2 1 4 4 H 1.48502 * 109.46672 * 270.00191 * 3 2 1 5 5 H 1.48492 * 109.47037 * 29.99867 * 3 2 1 6 6 H 1.48496 * 109.46778 * 150.00305 * 3 2 1 7 7 C 1.38628 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99843 * 179.97438 * 7 2 1 9 9 O 1.34813 * 120.00262 * 359.97438 * 7 2 1 10 10 C 1.35811 * 117.00196 * 185.06131 * 9 7 2 11 11 C 1.39455 * 120.40316 * 354.52705 * 10 9 7 12 12 C 1.38206 * 118.44609 * 179.97438 * 11 10 9 13 13 C 1.39168 * 119.17585 * 359.97438 * 12 11 10 14 14 N 1.39116 * 119.63211 * 179.97438 * 13 12 11 15 15 C 1.46505 * 120.00295 * 0.02562 * 14 13 12 16 16 C 1.50696 * 109.47085 * 179.97438 * 15 14 13 17 17 O 1.20760 * 120.00501 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99826 * 179.97438 * 16 15 14 19 19 C 1.50698 * 109.47228 * 180.02562 * 18 16 15 20 20 C 1.38239 * 119.99689 * 269.72961 * 19 18 16 21 21 C 1.38244 * 119.99554 * 179.76454 * 20 19 18 22 22 C 1.38227 * 120.00062 * 0.50911 * 21 20 19 23 23 C 1.38239 * 120.00380 * 359.73976 * 22 21 20 24 24 C 1.38233 * 119.99421 * 0.02562 * 23 22 21 25 25 N 1.32383 * 120.73559 * 0.02862 * 13 12 11 26 26 C 1.31936 * 121.69310 * 359.97334 * 25 13 12 27 27 H 0.97007 * 119.99132 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.77658 * 0.25427 * 11 10 9 29 29 H 1.08001 * 120.41212 * 179.97438 * 12 11 10 30 30 H 0.97007 * 119.99745 * 180.02562 * 14 13 12 31 31 H 1.08993 * 109.46869 * 299.99532 * 15 14 13 32 32 H 1.09004 * 109.46796 * 59.99920 * 15 14 13 33 33 H 1.08996 * 109.47354 * 300.00434 * 18 16 15 34 34 H 1.08996 * 109.46983 * 60.00594 * 18 16 15 35 35 H 1.07999 * 120.00393 * 359.97438 * 20 19 18 36 36 H 1.08002 * 119.99187 * 180.22612 * 21 20 19 37 37 H 1.07997 * 120.00255 * 179.72425 * 22 21 20 38 38 H 1.07995 * 120.00092 * 179.97438 * 23 22 21 39 39 H 1.08005 * 119.99508 * 179.97438 * 24 23 22 40 40 H 1.07994 * 119.62314 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4474 2.6526 0.7000 6 1 3.5474 1.4400 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3681 0.0016 10 6 2.0703 -3.5047 0.1088 11 6 3.4637 -3.4474 0.0974 12 6 4.1721 -4.6287 0.2096 13 6 3.4765 -5.8281 0.3300 14 7 4.1801 -7.0229 0.4431 15 6 5.6451 -7.0139 0.4355 16 6 6.1568 -8.4249 0.5711 17 8 5.3782 -9.3433 0.6639 18 6 7.6402 -8.6899 0.5896 19 6 7.8843 -10.1701 0.7327 20 6 8.0077 -10.7319 1.9897 21 6 8.2268 -12.0905 2.1210 22 6 8.3329 -12.8855 0.9952 23 6 8.2147 -12.3229 -0.2620 24 6 7.9908 -10.9651 -0.3931 25 7 2.1528 -5.8448 0.3371 26 6 1.4451 -4.7363 0.2320 27 1 -0.4849 0.8402 0.0004 28 1 3.9771 -2.5015 0.0076 29 1 5.2521 -4.6213 0.2040 30 1 3.7006 -7.8620 0.5269 31 1 6.0009 -6.5866 -0.5019 32 1 6.0090 -6.4141 1.2697 33 1 8.0840 -8.3371 -0.3413 34 1 8.0927 -8.1639 1.4301 35 1 7.9295 -10.1100 2.8692 36 1 8.3195 -12.5300 3.1032 37 1 8.5085 -13.9462 1.0977 38 1 8.2981 -12.9439 -1.1415 39 1 7.8988 -10.5255 -1.3754 40 1 0.3665 -4.7887 0.2420 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170186270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:44 Heat of formation + Delta-G solvation = 8.346244 kcal Electronic energy + Delta-G solvation = -23365.851139 eV Core-core repulsion = 19725.801863 eV Total energy + Delta-G solvation = -3640.049275 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.41063 -39.57329 -38.89624 -37.25290 -34.73349 -33.32707 -32.27759 -31.25217 -31.19647 -29.79580 -28.09425 -26.14399 -25.08359 -22.97099 -22.90323 -22.03426 -21.20054 -19.89183 -18.21993 -17.57611 -17.19493 -16.45932 -16.30917 -16.12750 -15.51354 -15.36515 -15.10507 -14.74301 -14.46911 -14.05663 -13.96632 -13.72486 -13.44108 -13.33748 -13.12250 -12.99213 -12.74558 -12.40883 -12.34192 -12.12093 -11.69494 -11.53563 -11.45659 -11.32343 -11.06636 -10.51500 -10.06930 -9.66822 -9.42036 -9.21146 -9.01815 -9.00028 -8.76411 -8.58883 -6.71150 -6.43550 -4.00992 1.01124 1.11162 1.64466 2.00587 2.38652 3.11947 3.12905 3.17533 3.20185 3.55586 3.92743 3.98205 4.25799 4.46860 4.64048 4.69335 4.79909 4.87093 4.97626 5.08714 5.10037 5.17143 5.19650 5.23395 5.29362 5.33453 5.43764 5.67294 5.70112 5.72333 5.88869 5.95828 6.13911 6.20849 6.24865 6.47795 6.69071 6.70168 7.07110 7.08056 7.21100 7.25631 7.62761 7.97227 8.09357 8.88398 9.01537 9.70856 10.74281 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.037324 B = 0.001989 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.004630 B =14071.913540 C =14508.869371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.088 0.912 9 O -0.177 6.177 10 C 0.065 3.935 11 C -0.156 4.156 12 C -0.186 4.186 13 C 0.309 3.691 14 N -0.737 5.737 15 C 0.089 3.911 16 C 0.351 3.649 17 O -0.434 6.434 18 C -0.130 4.130 19 C -0.075 4.075 20 C -0.108 4.108 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.108 4.108 25 N -0.499 5.499 26 C 0.070 3.930 27 H 0.270 0.730 28 H 0.137 0.863 29 H 0.116 0.884 30 H 0.405 0.595 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.862 -18.169 1.396 26.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.468 4.468 8 H 0.106 0.894 9 O -0.080 6.080 10 C 0.010 3.990 11 C -0.183 4.183 12 C -0.210 4.210 13 C 0.077 3.923 14 N -0.379 5.379 15 C -0.037 4.037 16 C 0.225 3.775 17 O -0.306 6.306 18 C -0.168 4.168 19 C -0.075 4.075 20 C -0.126 4.126 21 C -0.137 4.137 22 C -0.140 4.140 23 C -0.137 4.137 24 C -0.126 4.126 25 N -0.215 5.215 26 C -0.089 4.089 27 H 0.079 0.921 28 H 0.154 0.846 29 H 0.134 0.866 30 H 0.242 0.758 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 18.734 -19.144 1.497 26.827 hybrid contribution 0.910 1.443 -0.063 1.707 sum 19.644 -17.701 1.434 26.482 Atomic orbital electron populations 1.70049 1.05880 1.27578 1.46266 1.25255 0.95850 0.98719 0.96736 0.85729 0.78866 0.80258 0.78649 1.19946 1.20280 1.19303 1.21230 0.91585 0.80955 1.52989 0.89429 1.83997 1.33448 1.10933 1.79638 1.20256 0.90837 0.89677 0.98260 1.21395 0.93922 0.98445 1.04529 1.21078 0.99381 0.91640 1.08899 1.17829 0.88212 0.85548 1.00686 1.43645 1.02725 1.06718 1.84807 1.21453 0.83164 0.95659 1.03446 1.24683 0.91015 0.90384 0.71424 1.90431 1.59156 1.46633 1.34355 1.21122 0.95369 0.94322 1.05948 1.19430 1.00077 0.94352 0.93679 1.21025 0.99552 0.95362 0.96670 1.21128 1.00051 0.93796 0.98725 1.21165 1.00259 0.99805 0.92725 1.21127 1.00036 0.94997 0.97544 1.21019 0.99545 0.93965 0.98070 1.66907 1.06033 1.30811 1.17731 1.21479 0.99186 0.84829 1.03403 0.92057 0.84557 0.86556 0.75767 0.89171 0.89178 0.87043 0.87041 0.86135 0.86041 0.86153 0.86041 0.86142 0.83013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.05 13.67 55.48 0.76 -24.29 16 2 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 3 Si 0.94 20.16 29.55 -169.99 -5.02 15.14 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.39 -10.70 9.50 30.88 0.29 -10.40 16 8 H 0.09 2.19 5.25 -52.49 -0.28 1.92 16 9 O -0.18 -4.96 9.77 -0.09 0.00 -4.96 16 10 C 0.07 1.56 6.67 -38.97 -0.26 1.30 16 11 C -0.16 -3.27 9.26 -39.14 -0.36 -3.63 16 12 C -0.19 -3.31 9.32 -39.25 -0.37 -3.67 16 13 C 0.31 5.73 7.65 -154.91 -1.19 4.55 16 14 N -0.74 -11.08 5.70 -61.56 -0.35 -11.43 16 15 C 0.09 0.90 5.31 -5.19 -0.03 0.87 16 16 C 0.35 3.37 7.22 -29.04 -0.21 3.16 16 17 O -0.43 -5.85 15.34 6.00 0.09 -5.76 16 18 C -0.13 -0.83 5.77 -29.03 -0.17 -0.99 16 19 C -0.08 -0.65 4.37 -104.62 -0.46 -1.10 16 20 C -0.11 -0.92 9.70 -39.58 -0.38 -1.31 16 21 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 22 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 23 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 24 C -0.11 -0.92 9.70 -39.59 -0.38 -1.31 16 25 N -0.50 -10.42 10.39 -12.25 -0.13 -10.55 16 26 C 0.07 1.56 11.14 -17.35 -0.19 1.36 16 27 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.14 2.77 5.75 -52.49 -0.30 2.47 16 29 H 0.12 1.62 6.70 -52.49 -0.35 1.27 16 30 H 0.41 6.44 7.56 -40.82 -0.31 6.13 16 31 H 0.09 0.77 7.92 -51.93 -0.41 0.36 16 32 H 0.09 0.77 7.93 -51.93 -0.41 0.36 16 33 H 0.11 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.11 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 40 H 0.15 3.16 8.06 -52.49 -0.42 2.73 16 LS Contribution 350.92 15.07 5.29 5.29 Total: -1.00 -33.90 350.92 -8.93 -42.83 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -4.57 Total: 8.05 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -4.99 Total: -14.31 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.28 Total: -46.28 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.90 -8.93 -42.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170186270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.176 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds