Wall clock time and date at job start Fri Apr 10 2020 22:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86803 * 120.00314 * 2 1 4 4 H 1.48502 * 109.46672 * 270.00191 * 3 2 1 5 5 H 1.48492 * 109.47037 * 29.99867 * 3 2 1 6 6 H 1.48496 * 109.46778 * 150.00305 * 3 2 1 7 7 C 1.38628 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99843 * 179.97438 * 7 2 1 9 9 O 1.34813 * 120.00262 * 359.97438 * 7 2 1 10 10 C 1.35811 * 117.00196 * 185.06131 * 9 7 2 11 11 C 1.39455 * 120.40316 * 354.52705 * 10 9 7 12 12 C 1.38206 * 118.44609 * 179.97438 * 11 10 9 13 13 C 1.39168 * 119.17585 * 359.97438 * 12 11 10 14 14 N 1.39116 * 119.63211 * 179.97438 * 13 12 11 15 15 C 1.46505 * 120.00295 * 0.02562 * 14 13 12 16 16 C 1.50696 * 109.47085 * 179.97438 * 15 14 13 17 17 O 1.20760 * 120.00501 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99826 * 179.97438 * 16 15 14 19 19 C 1.50698 * 109.47228 * 180.02562 * 18 16 15 20 20 C 1.38239 * 119.99689 * 269.72961 * 19 18 16 21 21 C 1.38244 * 119.99554 * 179.76454 * 20 19 18 22 22 C 1.38227 * 120.00062 * 0.50911 * 21 20 19 23 23 C 1.38239 * 120.00380 * 359.73976 * 22 21 20 24 24 C 1.38233 * 119.99421 * 0.02562 * 23 22 21 25 25 N 1.32383 * 120.73559 * 0.02862 * 13 12 11 26 26 C 1.31936 * 121.69310 * 359.97334 * 25 13 12 27 27 H 0.97007 * 119.99132 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.77658 * 0.25427 * 11 10 9 29 29 H 1.08001 * 120.41212 * 179.97438 * 12 11 10 30 30 H 0.97007 * 119.99745 * 180.02562 * 14 13 12 31 31 H 1.08993 * 109.46869 * 299.99532 * 15 14 13 32 32 H 1.09004 * 109.46796 * 59.99920 * 15 14 13 33 33 H 1.08996 * 109.47354 * 300.00434 * 18 16 15 34 34 H 1.08996 * 109.46983 * 60.00594 * 18 16 15 35 35 H 1.07999 * 120.00393 * 359.97438 * 20 19 18 36 36 H 1.08002 * 119.99187 * 180.22612 * 21 20 19 37 37 H 1.07997 * 120.00255 * 179.72425 * 22 21 20 38 38 H 1.07995 * 120.00092 * 179.97438 * 23 22 21 39 39 H 1.08005 * 119.99508 * 179.97438 * 24 23 22 40 40 H 1.07994 * 119.62314 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4474 2.6526 0.7000 6 1 3.5474 1.4400 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3681 0.0016 10 6 2.0703 -3.5047 0.1088 11 6 3.4637 -3.4474 0.0974 12 6 4.1721 -4.6287 0.2096 13 6 3.4765 -5.8281 0.3300 14 7 4.1801 -7.0229 0.4431 15 6 5.6451 -7.0139 0.4355 16 6 6.1568 -8.4249 0.5711 17 8 5.3782 -9.3433 0.6639 18 6 7.6402 -8.6899 0.5896 19 6 7.8843 -10.1701 0.7327 20 6 8.0077 -10.7319 1.9897 21 6 8.2268 -12.0905 2.1210 22 6 8.3329 -12.8855 0.9952 23 6 8.2147 -12.3229 -0.2620 24 6 7.9908 -10.9651 -0.3931 25 7 2.1528 -5.8448 0.3371 26 6 1.4451 -4.7363 0.2320 27 1 -0.4849 0.8402 0.0004 28 1 3.9771 -2.5015 0.0076 29 1 5.2521 -4.6213 0.2040 30 1 3.7006 -7.8620 0.5269 31 1 6.0009 -6.5866 -0.5019 32 1 6.0090 -6.4141 1.2697 33 1 8.0840 -8.3371 -0.3413 34 1 8.0927 -8.1639 1.4301 35 1 7.9295 -10.1100 2.8692 36 1 8.3195 -12.5300 3.1032 37 1 8.5085 -13.9462 1.0977 38 1 8.2981 -12.9439 -1.1415 39 1 7.8988 -10.5255 -1.3754 40 1 0.3665 -4.7887 0.2420 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170186270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:44 Heat of formation + Delta-G solvation = -12.808563 kcal Electronic energy + Delta-G solvation = -23366.768480 eV Core-core repulsion = 19725.801863 eV Total energy + Delta-G solvation = -3640.966616 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.38978 -40.93273 -39.63030 -38.95472 -36.04005 -34.21344 -33.90345 -32.88174 -31.75637 -30.90330 -29.23456 -27.47222 -26.62443 -24.54619 -23.47227 -23.14404 -22.34042 -20.68989 -19.96945 -19.11772 -17.97754 -17.90021 -17.48450 -16.82875 -16.52109 -16.31371 -16.19529 -15.91371 -15.76039 -15.59506 -15.27564 -14.92280 -14.60391 -14.27675 -14.25317 -13.99098 -13.76112 -13.53213 -13.49809 -13.37334 -13.20309 -12.87387 -12.69848 -12.11407 -12.00220 -11.85258 -11.55897 -11.01581 -10.83738 -10.59990 -10.38700 -10.30874 -9.79787 -9.60331 -8.40728 -8.28350 -6.05802 0.38669 0.42859 0.52426 0.73782 0.94631 1.39816 1.49180 1.57207 2.14857 2.24932 2.80353 2.91497 3.18206 3.22309 3.54684 3.72003 3.85151 3.97652 4.11291 4.16669 4.23611 4.28862 4.38179 4.39562 4.44728 4.46481 4.53843 4.64422 4.73157 4.81089 4.91170 4.98321 5.17004 5.17288 5.29714 5.51195 5.53506 5.57596 5.63891 5.66872 6.02958 6.14180 6.21608 6.50072 6.66113 7.03365 7.32486 7.84565 8.82695 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.037324 B = 0.001989 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.004630 B =14071.913540 C =14508.869371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.027 4.027 3 Si 1.019 2.981 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.249 1.249 7 C -0.409 4.409 8 H 0.105 0.895 9 O -0.229 6.229 10 C 0.025 3.975 11 C -0.148 4.148 12 C -0.173 4.173 13 C 0.325 3.675 14 N -0.733 5.733 15 C 0.075 3.925 16 C 0.362 3.638 17 O -0.482 6.482 18 C -0.122 4.122 19 C -0.089 4.089 20 C -0.125 4.125 21 C -0.133 4.133 22 C -0.134 4.134 23 C -0.133 4.133 24 C -0.125 4.125 25 N -0.521 5.521 26 C 0.061 3.939 27 H 0.271 0.729 28 H 0.144 0.856 29 H 0.170 0.830 30 H 0.401 0.599 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.990 -18.420 1.478 30.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.224 4.224 3 Si 0.838 3.162 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.172 1.172 7 C -0.485 4.485 8 H 0.123 0.877 9 O -0.135 6.135 10 C -0.028 4.028 11 C -0.175 4.175 12 C -0.197 4.197 13 C 0.090 3.910 14 N -0.372 5.372 15 C -0.049 4.049 16 C 0.238 3.762 17 O -0.356 6.356 18 C -0.159 4.159 19 C -0.090 4.090 20 C -0.143 4.143 21 C -0.151 4.151 22 C -0.152 4.152 23 C -0.151 4.151 24 C -0.143 4.143 25 N -0.239 5.239 26 C -0.096 4.096 27 H 0.080 0.920 28 H 0.161 0.839 29 H 0.187 0.813 30 H 0.237 0.763 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 22.927 -19.457 1.581 30.112 hybrid contribution -0.174 1.108 -0.064 1.123 sum 22.753 -18.350 1.517 29.269 Atomic orbital electron populations 1.70212 1.08077 1.28606 1.49264 1.26581 0.96836 1.02763 0.96182 0.84577 0.77892 0.74576 0.79119 1.18975 1.20157 1.17216 1.21803 0.92568 0.81348 1.52814 0.87746 1.83966 1.35124 1.12040 1.82406 1.20622 0.92439 0.89096 1.00670 1.21623 0.92770 1.00087 1.03029 1.21476 1.01780 0.89715 1.06755 1.18300 0.87776 0.87285 0.97670 1.43944 1.04980 1.05181 1.83140 1.21967 0.79876 0.96966 1.06073 1.25032 0.92214 0.89435 0.69490 1.90445 1.60512 1.47758 1.36906 1.21194 0.92863 0.93252 1.08631 1.19733 0.99920 0.95721 0.93577 1.21318 0.99797 0.95832 0.97353 1.21433 0.99978 0.94090 0.99595 1.21461 1.00132 1.00814 0.92756 1.21432 0.99953 0.95414 0.98289 1.21312 0.99786 0.94367 0.98824 1.66971 1.07567 1.30108 1.19257 1.21470 0.99451 0.84971 1.03688 0.92049 0.83852 0.81292 0.76318 0.86235 0.86277 0.84165 0.84175 0.85042 0.84666 0.84566 0.84658 0.85046 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.11 13.67 21.61 0.30 -55.82 16 2 C -0.03 -1.48 5.49 84.82 0.47 -1.01 16 3 Si 1.02 41.50 29.55 68.60 2.03 43.53 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.25 -9.18 7.11 99.48 0.71 -8.48 16 7 C -0.41 -22.93 9.50 67.91 0.64 -22.29 16 8 H 0.11 5.20 5.25 -2.91 -0.02 5.19 16 9 O -0.23 -13.48 9.77 -23.24 -0.23 -13.70 16 10 C 0.02 1.22 6.67 22.67 0.15 1.37 16 11 C -0.15 -5.97 9.26 22.56 0.21 -5.76 16 12 C -0.17 -5.49 9.32 22.49 0.21 -5.28 16 13 C 0.32 11.18 7.65 133.04 1.02 12.20 16 14 N -0.73 -19.62 5.70 -348.68 -1.99 -21.61 16 15 C 0.08 1.14 5.31 85.63 0.45 1.59 16 16 C 0.36 5.59 7.22 29.10 0.21 5.80 16 17 O -0.48 -12.05 15.34 -1.45 -0.02 -12.07 16 18 C -0.12 -1.03 5.77 29.10 0.17 -0.86 16 19 C -0.09 -1.31 4.37 -19.87 -0.09 -1.40 16 20 C -0.13 -1.91 9.70 22.27 0.22 -1.69 16 21 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 22 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 23 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 24 C -0.12 -1.91 9.70 22.27 0.22 -1.69 16 25 N -0.52 -21.59 10.39 -192.68 -2.00 -23.59 16 26 C 0.06 2.80 11.14 84.78 0.94 3.74 16 27 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 28 H 0.14 5.53 5.75 -2.91 -0.02 5.51 16 29 H 0.17 3.55 6.70 -2.91 -0.02 3.53 16 30 H 0.40 11.93 7.56 -92.70 -0.70 11.23 16 31 H 0.12 1.25 7.92 -2.39 -0.02 1.23 16 32 H 0.12 1.26 7.93 -2.38 -0.02 1.24 16 33 H 0.14 0.42 8.08 -2.39 -0.02 0.40 16 34 H 0.14 0.42 8.08 -2.39 -0.02 0.40 16 35 H 0.13 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 37 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.13 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.15 6.57 8.06 -2.91 -0.02 6.54 16 Total: -1.00 -79.11 350.92 3.95 -75.16 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.38 Total: 28.65 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 5.49 Total: -20.55 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -3.69 Total: -101.01 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.25 Total: -25.78 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -79.11 3.95 -75.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170186270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.349 kcal (2) G-P(sol) polarization free energy of solvation -79.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds