Wall clock time and date at job start Fri Apr 10 2020 22:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86798 * 120.00034 * 2 1 4 4 H 1.48502 * 109.47375 * 269.99825 * 3 2 1 5 5 H 1.48497 * 109.47036 * 30.00234 * 3 2 1 6 6 H 1.48500 * 109.46944 * 150.00149 * 3 2 1 7 7 C 1.38637 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00075 * 179.97438 * 7 2 1 9 9 O 1.34813 * 119.99421 * 0.02562 * 7 2 1 10 10 C 1.35819 * 116.99658 * 185.05409 * 9 7 2 11 11 C 1.39448 * 120.40245 * 354.50286 * 10 9 7 12 12 C 1.38211 * 118.44747 * 179.76936 * 11 10 9 13 13 C 1.39169 * 119.16922 * 0.51452 * 12 11 10 14 14 N 1.39125 * 119.62837 * 179.75025 * 13 12 11 15 15 C 1.46495 * 120.00270 * 359.72567 * 14 13 12 16 16 H 1.09005 * 109.42257 * 325.11772 * 15 14 13 17 17 C 1.52975 * 109.42629 * 85.00014 * 15 14 13 18 18 O 1.43211 * 108.47363 * 169.19762 * 17 15 14 19 19 C 1.42733 * 113.11540 * 289.27024 * 18 17 15 20 20 C 1.50666 * 110.12238 * 51.85591 * 19 18 17 21 21 C 1.38875 * 118.54691 * 164.27486 * 20 19 18 22 22 C 1.38049 * 120.24844 * 179.69534 * 21 20 19 23 23 C 1.38268 * 119.89394 * 359.87549 * 22 21 20 24 24 C 1.38069 * 119.86012 * 0.07518 * 23 22 21 25 25 C 1.37674 * 121.67368 * 343.82361 * 20 19 18 26 26 N 1.32383 * 120.73728 * 359.46653 * 13 12 11 27 27 C 1.31934 * 121.69159 * 0.26137 * 26 13 12 28 28 H 0.97000 * 120.00142 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.78014 * 0.04361 * 11 10 9 30 30 H 1.08007 * 120.41363 * 180.26073 * 12 11 10 31 31 H 0.97003 * 119.99625 * 179.71867 * 14 13 12 32 32 H 1.08996 * 109.63602 * 49.49422 * 17 15 14 33 33 H 1.09003 * 109.63427 * 288.89110 * 17 15 14 34 34 H 1.08995 * 109.34001 * 172.01160 * 19 18 17 35 35 H 1.09002 * 109.33904 * 291.69737 * 19 18 17 36 36 H 1.08003 * 119.90331 * 359.56314 * 21 20 19 37 37 H 1.08004 * 120.05616 * 179.85494 * 22 21 20 38 38 H 1.07997 * 120.06899 * 180.09059 * 23 22 21 39 39 H 1.08005 * 119.86012 * 179.97438 * 24 23 22 40 40 H 1.08003 * 119.61616 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4401 0.7000 7 6 2.0090 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3348 -2.3681 -0.0016 10 6 2.0704 -3.5049 0.1046 11 6 3.4637 -3.4475 0.0936 12 6 4.1722 -4.6286 0.2090 13 6 3.4765 -5.8287 0.3206 14 7 4.1801 -7.0238 0.4320 15 6 5.6450 -7.0147 0.4254 16 1 5.9996 -6.2289 -0.2416 17 6 6.1586 -6.7497 1.8418 18 8 7.5694 -6.9942 1.8661 19 6 7.9004 -8.3780 1.7530 20 6 7.2073 -8.9807 0.5587 21 6 7.6494 -10.2090 0.0848 22 6 7.0357 -10.7964 -1.0034 23 6 5.9753 -10.1608 -1.6226 24 6 5.5351 -8.9401 -1.1509 25 6 6.1511 -8.3495 -0.0589 26 7 2.1528 -5.8454 0.3275 27 6 1.4451 -4.7367 0.2248 28 1 -0.4850 0.8400 0.0004 29 1 3.9772 -2.5018 0.0017 30 1 5.2522 -4.6206 0.2085 31 1 3.7006 -7.8630 0.5142 32 1 5.6588 -7.4175 2.5435 33 1 5.9617 -5.7129 2.1148 34 1 8.9789 -8.4828 1.6354 35 1 7.5832 -8.9000 2.6558 36 1 8.4777 -10.7060 0.5679 37 1 7.3835 -11.7506 -1.3707 38 1 5.4922 -10.6184 -2.4732 39 1 4.7070 -8.4435 -1.6348 40 1 0.3664 -4.7892 0.2337 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171291945.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:46 Heat of formation + Delta-G solvation = 5.588663 kcal Electronic energy + Delta-G solvation = -24624.441210 eV Core-core repulsion = 20984.272357 eV Total energy + Delta-G solvation = -3640.168853 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.73321 -39.52390 -37.78978 -37.32292 -35.40400 -32.35463 -31.95927 -31.43803 -31.26159 -29.33653 -27.61379 -25.69248 -25.28917 -23.89730 -22.99952 -22.32406 -21.23355 -20.22913 -18.24703 -17.66861 -17.33807 -16.64953 -16.34812 -15.90371 -15.76792 -15.46868 -14.73378 -14.52850 -14.34054 -14.27382 -13.97715 -13.75473 -13.50752 -13.17444 -12.86695 -12.76389 -12.51165 -12.41040 -12.29923 -11.86905 -11.68545 -11.52944 -11.31541 -11.07145 -10.82327 -10.50627 -10.24237 -9.67760 -9.43502 -9.04606 -8.99493 -8.90886 -8.77680 -8.56734 -6.73106 -6.44078 -4.01484 1.00245 1.08506 1.99059 2.36270 3.12856 3.13847 3.18392 3.27768 3.44795 3.88327 3.97731 4.31807 4.38171 4.55888 4.68132 4.72881 4.88378 5.00793 5.04337 5.07478 5.10025 5.26250 5.30107 5.35732 5.39159 5.57861 5.65363 5.67588 5.74088 5.80049 5.88397 5.96189 6.13307 6.23551 6.28884 6.47418 6.69056 6.69899 6.82895 7.08062 7.13223 7.25174 7.59165 7.96430 8.04929 8.84878 9.01114 9.69728 10.73720 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.024845 B = 0.002782 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.721198 B =10062.126335 C =10671.159988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.089 0.911 9 O -0.176 6.176 10 C 0.067 3.933 11 C -0.155 4.155 12 C -0.184 4.184 13 C 0.306 3.694 14 N -0.729 5.729 15 C 0.176 3.824 16 H 0.097 0.903 17 C 0.043 3.957 18 O -0.372 6.372 19 C 0.098 3.902 20 C -0.110 4.110 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.099 4.099 25 C -0.084 4.084 26 N -0.498 5.498 27 C 0.068 3.932 28 H 0.270 0.730 29 H 0.137 0.863 30 H 0.118 0.882 31 H 0.398 0.602 32 H 0.060 0.940 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.244 -18.220 0.713 23.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.106 0.894 9 O -0.080 6.080 10 C 0.012 3.988 11 C -0.182 4.182 12 C -0.208 4.208 13 C 0.074 3.926 14 N -0.369 5.369 15 C 0.069 3.931 16 H 0.115 0.885 17 C -0.035 4.035 18 O -0.289 6.289 19 C 0.022 3.978 20 C -0.111 4.111 21 C -0.136 4.136 22 C -0.134 4.134 23 C -0.139 4.139 24 C -0.117 4.117 25 C -0.085 4.085 26 N -0.214 5.214 27 C -0.092 4.092 28 H 0.080 0.920 29 H 0.154 0.846 30 H 0.136 0.864 31 H 0.233 0.767 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.084 0.916 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 14.677 -18.516 0.785 23.640 hybrid contribution 0.593 1.039 -0.201 1.213 sum 15.269 -17.477 0.584 23.215 Atomic orbital electron populations 1.70038 1.05899 1.27625 1.46238 1.25250 0.95837 0.98727 0.96669 0.85735 0.78919 0.80222 0.78690 1.19923 1.20262 1.19237 1.21241 0.91616 0.80931 1.52989 0.89392 1.83997 1.33480 1.10951 1.79523 1.20254 0.90799 0.89678 0.98112 1.21413 0.93913 0.98505 1.04369 1.21150 0.99538 0.91676 1.08480 1.17860 0.88165 0.85672 1.00875 1.43867 1.02529 1.06051 1.84466 1.20049 0.81109 0.94752 0.97194 0.88519 1.23279 0.80859 1.03178 0.96220 1.88102 1.23194 1.23552 1.94036 1.21481 0.99786 0.82432 0.94139 1.20295 0.97020 0.95684 0.98068 1.21014 1.00398 0.94873 0.97288 1.21121 0.96328 0.99901 0.96095 1.21176 0.97129 0.95470 1.00102 1.21179 0.99655 0.95388 0.95524 1.19586 0.96217 0.96086 0.96582 1.66904 1.05924 1.30810 1.17771 1.21451 0.99132 0.84854 1.03719 0.92036 0.84556 0.86427 0.76661 0.92149 0.87625 0.87673 0.91595 0.85800 0.85919 0.85824 0.85281 0.83066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.06 13.67 55.48 0.76 -24.30 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.30 29.55 -169.99 -5.02 15.28 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.39 -10.72 9.50 30.88 0.29 -10.43 16 8 H 0.09 2.22 5.25 -52.49 -0.28 1.94 16 9 O -0.18 -4.92 9.77 -0.12 0.00 -4.92 16 10 C 0.07 1.59 6.66 -38.97 -0.26 1.33 16 11 C -0.15 -3.26 9.25 -39.14 -0.36 -3.62 16 12 C -0.18 -3.32 8.92 -39.25 -0.35 -3.67 16 13 C 0.31 5.43 7.63 -154.90 -1.18 4.25 16 14 N -0.73 -10.22 4.62 -55.01 -0.25 -10.48 16 15 C 0.18 2.16 2.42 -69.07 -0.17 1.99 16 16 H 0.10 1.27 6.45 -51.93 -0.33 0.93 16 17 C 0.04 0.51 6.34 37.14 0.24 0.75 16 18 O -0.37 -4.35 10.80 -35.23 -0.38 -4.73 16 19 C 0.10 0.88 6.66 35.99 0.24 1.12 16 20 C -0.11 -1.09 5.80 -104.61 -0.61 -1.70 16 21 C -0.12 -0.98 9.68 -39.42 -0.38 -1.36 16 22 C -0.12 -0.95 10.05 -39.64 -0.40 -1.35 16 23 C -0.12 -1.11 10.05 -39.63 -0.40 -1.50 16 24 C -0.10 -1.07 9.06 -39.51 -0.36 -1.43 16 25 C -0.08 -0.95 5.47 -104.67 -0.57 -1.52 16 26 N -0.50 -9.87 10.39 -12.25 -0.13 -10.00 16 27 C 0.07 1.45 11.14 -17.35 -0.19 1.26 16 28 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.14 2.82 5.76 -52.48 -0.30 2.52 16 30 H 0.12 1.81 5.91 -52.48 -0.31 1.50 16 31 H 0.40 5.36 8.44 -40.82 -0.34 5.01 16 32 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 33 H 0.11 1.30 7.60 -51.93 -0.39 0.91 16 34 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.12 0.73 8.06 -52.48 -0.42 0.30 16 37 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.13 1.45 7.73 -52.48 -0.41 1.04 16 40 H 0.15 3.06 8.06 -52.48 -0.42 2.64 16 LS Contribution 336.27 15.07 5.07 5.07 Total: -1.00 -30.93 336.27 -8.98 -39.91 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -4.46 Total: 9.09 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -4.56 Total: -14.92 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.38 Total: -44.77 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.38 Total: -9.66 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.93 -8.98 -39.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171291945.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.495 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds