Wall clock time and date at job start Fri Apr 10 2020 22:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31386 * 1 3 3 Si 1.86802 * 119.99916 * 2 1 4 4 H 1.48497 * 109.46961 * 270.50574 * 3 2 1 5 5 H 1.48501 * 109.47202 * 30.50455 * 3 2 1 6 6 H 1.48494 * 109.47330 * 150.50219 * 3 2 1 7 7 C 1.39026 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99834 * 343.33126 * 7 2 1 9 9 N 1.36854 * 119.99942 * 163.33215 * 7 2 1 10 10 C 1.46502 * 120.00000 * 316.69092 * 9 7 2 11 11 C 1.50709 * 109.46806 * 269.00922 * 10 9 7 12 12 C 1.38230 * 120.00013 * 273.80212 * 11 10 9 13 13 C 1.38236 * 119.99907 * 179.76767 * 12 11 10 14 14 C 1.38234 * 119.99932 * 0.48607 * 13 12 11 15 15 C 1.38236 * 119.99743 * 359.78954 * 14 13 12 16 16 C 1.38231 * 119.99776 * 94.07603 * 11 10 9 17 17 C 1.34778 * 120.00070 * 136.69163 * 9 7 2 18 18 O 1.21732 * 119.99793 * 184.75506 * 17 9 7 19 19 C 1.46582 * 119.99928 * 4.75549 * 17 9 7 20 20 C 1.36466 * 126.64881 * 176.16109 * 19 17 9 21 21 N 1.33675 * 107.43869 * 179.97438 * 20 19 17 22 22 C 1.30624 * 109.00888 * 0.02562 * 21 20 19 23 23 C 1.50700 * 125.41191 * 179.97438 * 22 21 20 24 24 C 1.53001 * 117.50249 * 351.27805 * 23 22 21 25 25 C 1.53003 * 117.49856 * 59.94219 * 23 22 21 26 26 O 1.33695 * 109.17126 * 0.24149 * 22 21 20 27 27 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47367 * 29.00659 * 10 9 7 29 29 H 1.08994 * 109.47532 * 149.01154 * 10 9 7 30 30 H 1.08002 * 120.00224 * 359.97438 * 12 11 10 31 31 H 1.07996 * 120.00000 * 180.24827 * 13 12 11 32 32 H 1.08000 * 120.00128 * 179.76714 * 14 13 12 33 33 H 1.08007 * 119.99673 * 179.97438 * 15 14 13 34 34 H 1.08000 * 120.00481 * 359.97438 * 16 11 10 35 35 H 1.08005 * 126.28271 * 359.97438 * 20 19 17 36 36 H 1.09003 * 115.54918 * 205.60367 * 23 22 21 37 37 H 1.08993 * 117.50205 * 215.00450 * 24 23 22 38 38 H 1.08999 * 117.49640 * 0.02562 * 24 23 22 39 39 H 1.08992 * 117.49785 * 359.97013 * 25 23 22 40 40 H 1.08997 * 117.50005 * 144.97675 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 2.4846 2.0526 -1.4000 5 1 1.4507 2.6496 0.7107 6 1 3.5506 1.4372 0.6893 7 6 2.0090 -1.2040 0.0005 8 1 1.5031 -2.1195 0.2692 9 7 3.3344 -1.2290 -0.3394 10 6 3.8109 -0.4541 -1.4878 11 6 3.7580 -1.3094 -2.7276 12 6 4.8203 -2.1358 -3.0429 13 6 4.7698 -2.9238 -4.1775 14 6 3.6613 -2.8780 -5.0021 15 6 2.6015 -2.0472 -4.6898 16 6 2.6497 -1.2631 -3.5524 17 6 4.2015 -1.9665 0.3823 18 8 5.3924 -1.9213 0.1344 19 6 3.7103 -2.8230 1.4658 20 6 4.4524 -3.6761 2.2298 21 7 3.6218 -4.2617 3.0981 22 6 2.4124 -3.8092 2.9014 23 6 1.1883 -4.2228 3.6771 24 6 1.3292 -5.3999 4.6444 25 6 1.1916 -3.9751 5.1869 26 8 2.4321 -2.9252 1.8986 27 1 -0.4850 0.8400 -0.0004 28 1 3.1765 0.4219 -1.6234 29 1 4.8378 -0.1350 -1.3101 30 1 5.6883 -2.1683 -2.4010 31 1 5.5980 -3.5725 -4.4217 32 1 3.6234 -3.4908 -5.8906 33 1 1.7355 -2.0111 -5.3343 34 1 1.8215 -0.6145 -3.3082 35 1 5.5158 -3.8468 2.1480 36 1 0.2397 -4.1142 3.1514 37 1 0.4733 -6.0656 4.7550 38 1 2.3073 -5.8749 4.7200 39 1 2.0793 -3.5134 5.6192 40 1 0.2453 -3.7032 5.6544 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185209946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:55 Heat of formation + Delta-G solvation = 57.964684 kcal Electronic energy + Delta-G solvation = -25661.162343 eV Core-core repulsion = 22023.264685 eV Total energy + Delta-G solvation = -3637.897658 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.68973 -39.38113 -38.13650 -37.07361 -35.32248 -33.99058 -32.38386 -31.21462 -30.44144 -29.54545 -26.25839 -25.26739 -24.02808 -22.53907 -22.21574 -22.06887 -21.00214 -20.22236 -19.52597 -18.10615 -16.82642 -16.55566 -16.10830 -15.87454 -15.51296 -14.84292 -14.76886 -14.48643 -14.29486 -14.18667 -13.88079 -13.06015 -12.98840 -12.70377 -12.52011 -12.49257 -12.12269 -12.09300 -11.71516 -11.52333 -11.21296 -11.02673 -10.89379 -10.60611 -10.56181 -10.54893 -10.42858 -10.11199 -10.07093 -9.52599 -9.05996 -8.47273 -8.32619 -8.26715 -7.92793 -6.63716 -4.28988 1.53235 1.75012 1.85419 2.85974 2.94980 3.07540 3.10955 3.16982 3.89473 3.95569 3.97471 4.01618 4.33755 4.55618 4.78870 4.87848 4.99823 5.08312 5.27838 5.28610 5.39802 5.57657 5.60295 5.65265 5.68241 5.79479 5.80618 5.96105 6.07093 6.08491 6.17005 6.18403 6.26696 6.40682 6.43410 6.51533 6.78550 6.88357 6.90197 7.11629 7.15944 7.44355 7.83519 8.13496 8.19892 8.71968 9.05907 9.35105 10.45200 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.012607 B = 0.005186 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.531274 B = 5397.364894 C = 6356.432196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.075 3.925 3 Si 0.869 3.131 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.340 4.340 8 H 0.116 0.884 9 N -0.438 5.438 10 C 0.133 3.867 11 C -0.086 4.086 12 C -0.101 4.101 13 C -0.131 4.131 14 C -0.127 4.127 15 C -0.128 4.128 16 C -0.091 4.091 17 C 0.555 3.445 18 O -0.575 6.575 19 C -0.050 4.050 20 C 0.006 3.994 21 N -0.493 5.493 22 C 0.205 3.795 23 C -0.073 4.073 24 C -0.150 4.150 25 C -0.157 4.157 26 O -0.140 6.140 27 H 0.278 0.722 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.187 0.813 36 H 0.134 0.866 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.581 -4.687 0.045 4.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.134 4.134 3 Si 0.696 3.304 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.182 1.182 7 C -0.467 4.467 8 H 0.133 0.867 9 N -0.156 5.156 10 C 0.011 3.989 11 C -0.087 4.087 12 C -0.120 4.120 13 C -0.149 4.149 14 C -0.145 4.145 15 C -0.146 4.146 16 C -0.110 4.110 17 C 0.345 3.655 18 O -0.461 6.461 19 C -0.106 4.106 20 C -0.139 4.139 21 N -0.223 5.223 22 C 0.001 3.999 23 C -0.092 4.092 24 C -0.187 4.187 25 C -0.195 4.195 26 O -0.024 6.024 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.145 0.855 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.204 0.796 36 H 0.152 0.848 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.013 -4.916 0.338 5.323 hybrid contribution -0.037 1.402 -0.617 1.532 sum 1.976 -3.514 -0.278 4.041 Atomic orbital electron populations 1.69686 1.06173 1.28467 1.43789 1.25378 0.95165 0.98337 0.94565 0.87065 0.81284 0.83372 0.78725 1.19424 1.20866 1.18249 1.19288 0.82807 0.96624 1.48023 0.86685 1.43620 1.08433 1.41374 1.22146 1.20757 1.00859 0.93478 0.83821 1.20191 0.94319 0.98422 0.95750 1.21238 0.98814 0.95440 0.96490 1.21056 0.98335 0.99898 0.95603 1.21048 0.94370 0.99460 0.99643 1.21070 0.98470 0.97454 0.97647 1.21144 0.97269 0.98820 0.93732 1.16732 0.85092 0.82875 0.80833 1.90718 1.14849 1.69791 1.70748 1.23259 0.81432 1.03959 1.01994 1.23322 1.00787 0.96064 0.93678 1.70159 1.00122 1.26634 1.25381 1.25189 0.94598 0.90220 0.89906 1.20013 0.92861 1.05517 0.90845 1.23058 1.04347 0.90916 1.00421 1.23086 1.03980 0.99293 0.93114 1.84997 1.29307 1.48542 1.39556 0.91128 0.90124 0.89784 0.85469 0.86625 0.86777 0.86503 0.85797 0.79580 0.84840 0.87843 0.87303 0.88207 0.87680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.27 13.96 55.50 0.77 -21.50 16 2 C 0.07 1.90 5.36 -17.45 -0.09 1.81 16 3 Si 0.87 19.60 25.11 -169.99 -4.27 15.34 16 4 H -0.27 -5.67 6.55 56.52 0.37 -5.30 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.34 -8.72 8.43 -15.02 -0.13 -8.85 16 8 H 0.12 3.20 6.14 -52.49 -0.32 2.88 16 9 N -0.44 -10.48 2.07 -117.61 -0.24 -10.72 16 10 C 0.13 2.87 4.28 -5.19 -0.02 2.85 16 11 C -0.09 -1.70 5.46 -104.62 -0.57 -2.28 16 12 C -0.10 -1.86 9.72 -39.58 -0.38 -2.25 16 13 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 14 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 15 C -0.13 -2.07 10.05 -39.58 -0.40 -2.46 16 16 C -0.09 -1.71 9.68 -39.59 -0.38 -2.09 16 17 C 0.56 13.23 7.60 -12.90 -0.10 13.13 16 18 O -0.58 -13.83 15.82 5.16 0.08 -13.75 16 19 C -0.05 -1.12 6.85 -36.86 -0.25 -1.37 16 20 C 0.01 0.11 11.67 -17.39 -0.20 -0.09 16 21 N -0.49 -9.48 10.79 -10.77 -0.12 -9.60 16 22 C 0.21 3.94 7.87 -12.79 -0.10 3.83 16 23 C -0.07 -1.08 6.33 -91.77 -0.58 -1.66 16 24 C -0.15 -1.73 10.13 -26.69 -0.27 -2.00 16 25 C -0.16 -1.87 10.24 -26.69 -0.27 -2.14 16 26 O -0.14 -3.16 7.73 4.34 0.03 -3.13 16 27 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.08 1.75 3.46 -51.93 -0.18 1.57 16 29 H 0.08 1.76 7.36 -51.93 -0.38 1.37 16 30 H 0.13 2.38 7.40 -52.49 -0.39 1.99 16 31 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 35 H 0.19 3.28 8.06 -52.48 -0.42 2.86 16 36 H 0.13 1.84 8.14 -51.93 -0.42 1.42 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.11 1.35 7.87 -51.93 -0.41 0.94 16 39 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -28.97 343.37 -7.77 -36.74 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -4.65 Total: 9.79 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -4.55 Total: -8.35 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.42 Total: -41.82 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: 0.12 Total: -16.87 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.27 Total: 15.34 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.97 -7.77 -36.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185209946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.703 kcal (2) G-P(sol) polarization free energy of solvation -28.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds