Wall clock time and date at job start Fri Apr 10 2020 22:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31386 * 1 3 3 Si 1.86802 * 119.99916 * 2 1 4 4 H 1.48497 * 109.46961 * 270.50574 * 3 2 1 5 5 H 1.48501 * 109.47202 * 30.50455 * 3 2 1 6 6 H 1.48494 * 109.47330 * 150.50219 * 3 2 1 7 7 C 1.39026 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99834 * 343.33126 * 7 2 1 9 9 N 1.36854 * 119.99942 * 163.33215 * 7 2 1 10 10 C 1.46502 * 120.00000 * 316.69092 * 9 7 2 11 11 C 1.50709 * 109.46806 * 269.00922 * 10 9 7 12 12 C 1.38230 * 120.00013 * 273.80212 * 11 10 9 13 13 C 1.38236 * 119.99907 * 179.76767 * 12 11 10 14 14 C 1.38234 * 119.99932 * 0.48607 * 13 12 11 15 15 C 1.38236 * 119.99743 * 359.78954 * 14 13 12 16 16 C 1.38231 * 119.99776 * 94.07603 * 11 10 9 17 17 C 1.34778 * 120.00070 * 136.69163 * 9 7 2 18 18 O 1.21732 * 119.99793 * 184.75506 * 17 9 7 19 19 C 1.46582 * 119.99928 * 4.75549 * 17 9 7 20 20 C 1.36466 * 126.64881 * 176.16109 * 19 17 9 21 21 N 1.33675 * 107.43869 * 179.97438 * 20 19 17 22 22 C 1.30624 * 109.00888 * 0.02562 * 21 20 19 23 23 C 1.50700 * 125.41191 * 179.97438 * 22 21 20 24 24 C 1.53001 * 117.50249 * 351.27805 * 23 22 21 25 25 C 1.53003 * 117.49856 * 59.94219 * 23 22 21 26 26 O 1.33695 * 109.17126 * 0.24149 * 22 21 20 27 27 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47367 * 29.00659 * 10 9 7 29 29 H 1.08994 * 109.47532 * 149.01154 * 10 9 7 30 30 H 1.08002 * 120.00224 * 359.97438 * 12 11 10 31 31 H 1.07996 * 120.00000 * 180.24827 * 13 12 11 32 32 H 1.08000 * 120.00128 * 179.76714 * 14 13 12 33 33 H 1.08007 * 119.99673 * 179.97438 * 15 14 13 34 34 H 1.08000 * 120.00481 * 359.97438 * 16 11 10 35 35 H 1.08005 * 126.28271 * 359.97438 * 20 19 17 36 36 H 1.09003 * 115.54918 * 205.60367 * 23 22 21 37 37 H 1.08993 * 117.50205 * 215.00450 * 24 23 22 38 38 H 1.08999 * 117.49640 * 0.02562 * 24 23 22 39 39 H 1.08992 * 117.49785 * 359.97013 * 25 23 22 40 40 H 1.08997 * 117.50005 * 144.97675 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 2.4846 2.0526 -1.4000 5 1 1.4507 2.6496 0.7107 6 1 3.5506 1.4372 0.6893 7 6 2.0090 -1.2040 0.0005 8 1 1.5031 -2.1195 0.2692 9 7 3.3344 -1.2290 -0.3394 10 6 3.8109 -0.4541 -1.4878 11 6 3.7580 -1.3094 -2.7276 12 6 4.8203 -2.1358 -3.0429 13 6 4.7698 -2.9238 -4.1775 14 6 3.6613 -2.8780 -5.0021 15 6 2.6015 -2.0472 -4.6898 16 6 2.6497 -1.2631 -3.5524 17 6 4.2015 -1.9665 0.3823 18 8 5.3924 -1.9213 0.1344 19 6 3.7103 -2.8230 1.4658 20 6 4.4524 -3.6761 2.2298 21 7 3.6218 -4.2617 3.0981 22 6 2.4124 -3.8092 2.9014 23 6 1.1883 -4.2228 3.6771 24 6 1.3292 -5.3999 4.6444 25 6 1.1916 -3.9751 5.1869 26 8 2.4321 -2.9252 1.8986 27 1 -0.4850 0.8400 -0.0004 28 1 3.1765 0.4219 -1.6234 29 1 4.8378 -0.1350 -1.3101 30 1 5.6883 -2.1683 -2.4010 31 1 5.5980 -3.5725 -4.4217 32 1 3.6234 -3.4908 -5.8906 33 1 1.7355 -2.0111 -5.3343 34 1 1.8215 -0.6145 -3.3082 35 1 5.5158 -3.8468 2.1480 36 1 0.2397 -4.1142 3.1514 37 1 0.4733 -6.0656 4.7550 38 1 2.3073 -5.8749 4.7200 39 1 2.0793 -3.5134 5.6192 40 1 0.2453 -3.7032 5.6544 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185209946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:55 Heat of formation + Delta-G solvation = 40.965975 kcal Electronic energy + Delta-G solvation = -25661.899462 eV Core-core repulsion = 22023.264685 eV Total energy + Delta-G solvation = -3638.634778 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.30773 -41.03211 -39.64747 -38.17345 -37.12989 -35.60270 -34.24542 -32.78782 -31.76934 -31.10280 -27.82928 -27.13706 -25.46584 -24.01878 -23.41869 -23.25574 -22.44524 -21.66987 -21.28828 -19.88917 -18.39158 -17.98573 -17.72991 -17.46314 -17.27326 -16.42776 -16.14412 -15.92570 -15.65196 -15.61748 -15.50730 -14.77500 -14.55875 -14.23927 -14.16142 -14.11867 -13.63469 -13.33769 -13.27924 -13.00019 -12.56909 -12.47192 -12.37921 -12.11362 -12.05795 -11.89215 -11.79138 -11.71473 -11.49918 -11.33250 -10.91410 -10.00184 -9.80697 -9.71116 -9.64071 -8.59638 -6.28017 -0.11055 0.38703 0.51497 1.10392 1.23541 1.33002 1.37384 1.56501 2.07286 2.13947 2.39671 2.82424 2.86528 2.99266 3.07914 3.72328 3.79413 3.88569 3.90195 4.00078 4.05614 4.13781 4.17391 4.26612 4.30198 4.43558 4.59470 4.68724 4.75077 4.76158 4.78834 4.92714 5.06569 5.08201 5.17329 5.24823 5.27047 5.30497 5.57516 5.59706 5.74579 5.95268 6.11479 6.13169 6.56503 6.80455 7.14798 7.46704 8.53061 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.012607 B = 0.005186 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.531274 B = 5397.364894 C = 6356.432196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.044 3.956 3 Si 0.914 3.086 4 H -0.247 1.247 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.339 4.339 8 H 0.086 0.914 9 N -0.447 5.447 10 C 0.132 3.868 11 C -0.109 4.109 12 C -0.117 4.117 13 C -0.127 4.127 14 C -0.117 4.117 15 C -0.127 4.127 16 C -0.112 4.112 17 C 0.552 3.448 18 O -0.585 6.585 19 C -0.096 4.096 20 C 0.027 3.973 21 N -0.498 5.498 22 C 0.216 3.784 23 C -0.112 4.112 24 C -0.125 4.125 25 C -0.142 4.142 26 O -0.167 6.167 27 H 0.283 0.717 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.147 0.853 32 H 0.156 0.844 33 H 0.145 0.855 34 H 0.109 0.891 35 H 0.209 0.791 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 -6.023 -0.327 6.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.162 4.162 3 Si 0.739 3.261 4 H -0.172 1.172 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.467 4.467 8 H 0.103 0.897 9 N -0.165 5.165 10 C 0.011 3.989 11 C -0.110 4.110 12 C -0.135 4.135 13 C -0.145 4.145 14 C -0.134 4.134 15 C -0.144 4.144 16 C -0.131 4.131 17 C 0.342 3.658 18 O -0.472 6.472 19 C -0.151 4.151 20 C -0.117 4.117 21 N -0.227 5.227 22 C 0.012 3.988 23 C -0.131 4.131 24 C -0.162 4.162 25 C -0.180 4.180 26 O -0.052 6.052 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.134 0.866 31 H 0.164 0.836 32 H 0.173 0.827 33 H 0.162 0.838 34 H 0.127 0.873 35 H 0.226 0.774 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.119 0.881 39 H 0.109 0.891 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.069 -6.251 -0.045 6.585 hybrid contribution -0.043 1.638 -0.438 1.696 sum 2.026 -4.613 -0.482 5.062 Atomic orbital electron populations 1.69737 1.07140 1.29389 1.45357 1.25808 0.95635 1.00514 0.94271 0.86353 0.79499 0.80554 0.79734 1.17206 1.20177 1.19685 1.18984 0.83430 0.95814 1.48441 0.89696 1.43673 1.07792 1.41922 1.23069 1.20782 1.00340 0.93619 0.84204 1.20112 0.95707 0.99580 0.95610 1.21250 0.98170 0.96350 0.97771 1.21428 0.99633 0.99092 0.94329 1.21510 0.93017 0.98586 1.00329 1.21414 0.99856 0.96455 0.96717 1.21167 0.96683 1.00035 0.95195 1.16955 0.85107 0.82721 0.80986 1.90681 1.15012 1.70230 1.71268 1.23187 0.82123 1.06221 1.03608 1.23719 1.01621 0.94156 0.92189 1.70249 1.00145 1.26913 1.25437 1.26301 0.96034 0.88157 0.88330 1.20410 0.91280 1.09278 0.92163 1.23201 1.05334 0.90672 0.96945 1.23228 1.05061 0.99515 0.90167 1.84965 1.29575 1.49786 1.40879 0.90636 0.90639 0.89902 0.86589 0.83567 0.82672 0.83767 0.87277 0.77433 0.84342 0.84473 0.88108 0.89148 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.71 13.96 21.68 0.30 -47.40 16 2 C 0.04 2.31 5.36 84.95 0.46 2.77 16 3 Si 0.91 41.25 25.11 68.60 1.72 42.97 16 4 H -0.25 -10.21 6.55 99.48 0.65 -9.56 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.34 -18.21 8.43 84.10 0.71 -17.51 16 8 H 0.09 5.03 6.14 -2.91 -0.02 5.01 16 9 N -0.45 -22.26 2.07 -644.22 -1.33 -23.60 16 10 C 0.13 5.90 4.28 85.64 0.37 6.27 16 11 C -0.11 -4.43 5.46 -19.87 -0.11 -4.54 16 12 C -0.12 -4.30 9.72 22.27 0.22 -4.08 16 13 C -0.13 -3.74 10.05 22.27 0.22 -3.51 16 14 C -0.12 -3.10 10.05 22.27 0.22 -2.88 16 15 C -0.13 -3.83 10.05 22.27 0.22 -3.61 16 16 C -0.11 -4.24 9.68 22.27 0.22 -4.03 16 17 C 0.55 27.33 7.60 86.42 0.66 27.98 16 18 O -0.58 -28.93 15.82 -4.45 -0.07 -29.00 16 19 C -0.10 -4.46 6.85 24.03 0.16 -4.30 16 20 C 0.03 1.08 11.67 84.00 0.98 2.06 16 21 N -0.50 -19.00 10.79 -302.75 -3.27 -22.27 16 22 C 0.22 8.35 7.87 88.29 0.69 9.04 16 23 C -0.11 -3.19 6.33 -11.54 -0.07 -3.26 16 24 C -0.12 -2.54 10.13 30.62 0.31 -2.23 16 25 C -0.14 -3.07 10.24 30.62 0.31 -2.75 16 26 O -0.17 -7.82 7.73 -7.38 -0.06 -7.88 16 27 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 28 H 0.08 3.37 3.46 -2.39 -0.01 3.36 16 29 H 0.08 3.61 7.36 -2.39 -0.02 3.60 16 30 H 0.12 4.44 7.40 -2.91 -0.02 4.42 16 31 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 32 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 33 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 34 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 35 H 0.21 7.20 8.06 -2.91 -0.02 7.17 16 36 H 0.14 3.76 8.14 -2.39 -0.02 3.74 16 37 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.10 2.27 7.87 -2.39 -0.02 2.25 16 39 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -65.48 343.37 3.89 -61.59 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 1.02 Total: 30.15 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: 5.57 Total: -4.56 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -4.30 Total: -93.27 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.13 Total: -36.88 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.72 Total: 42.97 kcal Total: -65.48 3.89 -61.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185209946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.557 kcal (2) G-P(sol) polarization free energy of solvation -65.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds