Wall clock time and date at job start Fri Apr 10 2020 22:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86796 * 119.99957 * 2 1 4 4 H 1.48502 * 109.47120 * 239.99564 * 3 2 1 5 5 H 1.48498 * 109.47505 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47246 * 119.99511 * 3 2 1 7 7 C 1.39936 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99916 * 197.88599 * 7 2 1 9 9 C 1.41434 * 120.00185 * 17.88591 * 7 2 1 10 10 C 1.40788 * 120.18123 * 204.44475 * 9 7 2 11 11 C 1.37702 * 120.04276 * 180.02562 * 10 9 7 12 12 C 1.38375 * 120.41243 * 359.69541 * 11 10 9 13 13 C 1.39876 * 120.35518 * 0.55841 * 12 11 10 14 14 C 1.47893 * 120.02548 * 179.74105 * 13 12 11 15 15 O 1.21549 * 120.00209 * 179.72228 * 14 13 12 16 16 N 1.34777 * 119.99779 * 359.73064 * 14 13 12 17 17 C 1.46502 * 119.99659 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46916 * 179.97438 * 17 16 14 19 19 O 1.42899 * 109.47241 * 64.99859 * 18 17 16 20 20 C 1.35737 * 117.00106 * 180.02562 * 19 18 17 21 21 C 1.39267 * 120.84837 * 179.97438 * 20 19 18 22 22 C 1.37970 * 119.09556 * 179.97438 * 21 20 19 23 23 N 1.31961 * 120.81985 * 359.97438 * 22 21 20 24 24 C 1.31964 * 121.86405 * 0.02562 * 23 22 21 25 25 C 1.37966 * 120.82536 * 0.02562 * 24 23 22 26 26 C 1.39035 * 119.95061 * 359.46762 * 13 12 11 27 27 H 0.97003 * 119.99835 * 0.02562 * 1 2 3 28 28 H 1.07995 * 119.97684 * 0.02562 * 10 9 7 29 29 H 1.07996 * 119.79644 * 179.97438 * 11 10 9 30 30 H 1.07997 * 119.82528 * 180.27847 * 12 11 10 31 31 H 0.97003 * 119.99806 * 359.97438 * 16 14 13 32 32 H 1.09000 * 109.47342 * 59.99511 * 17 16 14 33 33 H 1.09001 * 109.46985 * 299.99236 * 17 16 14 34 34 H 1.08998 * 109.47024 * 305.00027 * 18 17 16 35 35 H 1.08993 * 109.47377 * 184.99863 * 18 17 16 36 36 H 1.07998 * 120.45250 * 359.70438 * 21 20 19 37 37 H 1.07999 * 119.59134 * 179.97438 * 22 21 20 38 38 H 1.08005 * 119.58347 * 179.97438 * 24 23 22 39 39 H 1.07994 * 120.45840 * 180.02562 * 25 24 23 40 40 H 1.08002 * 120.20383 * 180.22988 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2774 2.7465 -0.0006 6 1 3.0960 1.6965 1.2126 7 6 2.0080 -1.2119 0.0005 8 1 3.0488 -1.2344 0.2878 9 6 1.3521 -2.4073 -0.3751 10 6 1.8262 -3.6500 0.0866 11 6 1.1858 -4.8121 -0.2813 12 6 0.0710 -4.7686 -1.0999 13 6 -0.4114 -3.5437 -1.5727 14 6 -1.6001 -3.5061 -2.4518 15 8 -2.0219 -2.4412 -2.8584 16 7 -2.2157 -4.6528 -2.8021 17 6 -3.3935 -4.6155 -3.6725 18 6 -3.8944 -6.0409 -3.9142 19 8 -4.3527 -6.6001 -2.6816 20 6 -4.8327 -7.8691 -2.7214 21 6 -5.2997 -8.4925 -1.5669 22 6 -5.7802 -9.7832 -1.6489 23 7 -5.8009 -10.4250 -2.8018 24 6 -5.3673 -9.8682 -3.9169 25 6 -4.8707 -8.5810 -3.9178 26 6 0.2240 -2.3612 -1.2109 27 1 -0.4850 0.8401 -0.0004 28 1 2.6928 -3.6917 0.7298 29 1 1.5531 -5.7632 0.0749 30 1 -0.4267 -5.6856 -1.3789 31 1 -1.8788 -5.5027 -2.4779 32 1 -3.1269 -4.1580 -4.6253 33 1 -4.1794 -4.0299 -3.1955 34 1 -3.0811 -6.6497 -4.3092 35 1 -4.7148 -6.0210 -4.6314 36 1 -5.2818 -7.9743 -0.6196 37 1 -6.1439 -10.2745 -0.7585 38 1 -5.4009 -10.4275 -4.8402 39 1 -4.5178 -8.1311 -4.8339 40 1 -0.1473 -1.4129 -1.5706 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188689215.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:00 Heat of formation + Delta-G solvation = -22.441328 kcal Electronic energy + Delta-G solvation = -23944.225788 eV Core-core repulsion = 20302.841463 eV Total energy + Delta-G solvation = -3641.384325 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.87477 -39.34023 -38.50926 -37.03285 -34.63902 -33.73934 -31.85872 -31.49314 -30.58225 -29.48467 -29.03273 -25.38321 -24.53073 -23.58091 -22.83632 -21.74708 -20.92003 -19.65651 -18.91006 -17.84442 -17.01910 -16.53265 -16.17416 -15.96842 -15.50004 -15.27101 -15.02139 -14.67989 -14.56464 -14.08551 -13.91572 -13.88154 -13.51949 -13.22006 -12.71499 -12.65706 -12.50582 -12.21568 -11.72261 -11.66294 -11.41905 -11.16611 -11.09086 -10.76859 -10.52179 -10.06531 -9.85357 -9.71867 -9.55820 -9.22750 -9.16769 -9.07352 -8.77376 -7.65722 -7.54213 -6.81914 -4.43275 0.79116 1.05376 2.17711 2.67346 2.80397 3.06211 3.07915 3.15164 3.51830 3.56698 3.82960 3.90453 4.15878 4.28687 4.50888 4.61102 4.61609 4.72077 4.85213 4.90977 5.05478 5.40272 5.46135 5.50097 5.56930 5.62389 5.75441 5.84894 6.06585 6.23018 6.25567 6.69526 6.72557 6.90046 6.96419 6.99416 7.19190 7.35813 7.67327 7.70474 7.72616 7.89803 8.03623 8.16197 8.48200 8.77912 8.81201 8.88536 10.12764 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.026182 B = 0.002489 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.181418 B =11246.431187 C =11803.066057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.211 4.211 11 C -0.097 4.097 12 C -0.218 4.218 13 C -0.128 4.128 14 C 0.565 3.435 15 O -0.546 6.546 16 N -0.736 5.736 17 C 0.124 3.876 18 C 0.046 3.954 19 O -0.301 6.301 20 C 0.174 3.826 21 C -0.205 4.205 22 C 0.132 3.868 23 N -0.513 5.513 24 C 0.134 3.866 25 C -0.265 4.265 26 C -0.093 4.093 27 H 0.285 0.715 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.402 0.598 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.144 0.856 37 H 0.162 0.838 38 H 0.157 0.843 39 H 0.139 0.861 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.207 -13.835 -6.904 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.238 4.238 13 C -0.131 4.131 14 C 0.356 3.644 15 O -0.424 6.424 16 N -0.391 5.391 17 C 0.000 4.000 18 C -0.029 4.029 19 O -0.212 6.212 20 C 0.119 3.881 21 C -0.226 4.226 22 C -0.023 4.023 23 N -0.226 5.226 24 C -0.022 4.022 25 C -0.286 4.286 26 C -0.113 4.113 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.237 0.763 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.162 0.838 37 H 0.179 0.821 38 H 0.174 0.826 39 H 0.157 0.843 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.030 -13.551 -7.054 18.276 hybrid contribution 0.798 1.117 0.016 1.372 sum -9.232 -12.435 -7.038 17.011 Atomic orbital electron populations 1.69787 1.07586 1.29910 1.33424 1.25975 0.94779 1.01576 0.92305 0.86316 0.80106 0.80058 0.79991 1.18713 1.20218 1.18942 1.19559 0.98231 0.91053 1.40011 0.90080 1.17599 0.91197 0.92464 0.89160 1.21100 1.03533 0.92742 1.05737 1.20431 0.95990 0.96748 0.98404 1.20327 1.01234 0.94588 1.07625 1.19441 0.96508 0.95343 1.01818 1.18860 0.83298 0.82677 0.79555 1.90699 1.66374 1.29846 1.55499 1.45897 1.30562 1.10110 1.52524 1.21284 0.89076 0.93288 0.96331 1.23260 0.99454 0.94997 0.85204 1.86182 1.75341 1.25079 1.34610 1.19384 0.90521 0.84095 0.94056 1.21595 1.05393 0.97180 0.98401 1.22647 0.93288 0.90370 0.96002 1.67731 1.18086 1.37828 0.98981 1.22569 0.91535 0.91465 0.96667 1.22266 1.09586 0.98358 0.98348 1.21640 0.96495 0.96429 0.96730 0.90355 0.88592 0.88905 0.89342 0.76254 0.89322 0.90475 0.90799 0.90094 0.83832 0.82058 0.82586 0.84310 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.70 10.96 55.55 0.61 -20.09 16 2 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.69 29.59 -169.99 -5.03 13.66 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.46 -12.03 9.05 -37.73 -0.34 -12.37 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 9 C 0.10 2.59 5.57 -106.87 -0.60 2.00 16 10 C -0.21 -5.00 9.78 -38.81 -0.38 -5.38 16 11 C -0.10 -2.08 10.01 -39.73 -0.40 -2.47 16 12 C -0.22 -4.57 9.55 -38.92 -0.37 -4.94 16 13 C -0.13 -3.01 5.87 -105.04 -0.62 -3.62 16 14 C 0.57 12.18 7.77 -12.31 -0.10 12.09 16 15 O -0.55 -13.45 16.33 5.32 0.09 -13.37 16 16 N -0.74 -11.81 5.45 -61.23 -0.33 -12.14 16 17 C 0.12 1.55 6.06 -4.04 -0.02 1.53 16 18 C 0.05 0.42 4.90 37.16 0.18 0.60 16 19 O -0.30 -3.41 10.10 -18.92 -0.19 -3.60 16 20 C 0.17 1.80 6.74 -38.82 -0.26 1.54 16 21 C -0.20 -2.00 10.08 -39.30 -0.40 -2.40 16 22 C 0.13 1.20 11.17 -17.59 -0.20 1.01 16 23 N -0.51 -5.30 10.36 -13.33 -0.14 -5.44 16 24 C 0.13 1.17 11.17 -17.59 -0.20 0.97 16 25 C -0.26 -2.27 9.11 -39.30 -0.36 -2.63 16 26 C -0.09 -2.47 8.24 -38.44 -0.32 -2.78 16 27 H 0.29 6.95 8.30 -40.82 -0.34 6.61 16 28 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 29 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.09 1.55 6.38 -52.49 -0.33 1.22 16 31 H 0.40 5.80 6.49 -40.82 -0.26 5.54 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.57 7.71 -51.93 -0.40 0.17 16 35 H 0.08 0.54 7.71 -51.93 -0.40 0.14 16 36 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 39 H 0.14 0.87 6.47 -52.49 -0.34 0.53 16 40 H 0.13 3.84 5.74 -52.49 -0.30 3.54 16 LS Contribution 347.59 15.07 5.24 5.24 Total: -1.00 -31.68 347.59 -8.76 -40.44 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -4.55 Total: 10.42 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -4.45 Total: -15.13 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.14 Total: -37.67 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.10 Total: -16.96 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.68 -8.76 -40.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188689215.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.001 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds