Wall clock time and date at job start Fri Apr 10 2020 22:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31468 * 1 3 3 Si 1.86806 * 119.99417 * 2 1 4 4 H 1.48507 * 109.46858 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47021 * 300.00127 * 3 2 1 6 6 H 1.48495 * 109.46943 * 60.00466 * 3 2 1 7 7 C 1.38882 * 120.00524 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99847 * 179.97438 * 7 2 1 9 9 N 1.37164 * 119.99606 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99493 * 179.97438 * 9 7 2 11 11 O 1.21596 * 120.00244 * 359.97438 * 10 9 7 12 12 N 1.34776 * 119.99661 * 179.97438 * 10 9 7 13 13 C 1.40105 * 120.00026 * 185.31333 * 12 10 9 14 14 C 1.38855 * 120.00997 * 33.28634 * 13 12 10 15 15 C 1.38093 * 119.97858 * 180.02562 * 14 13 12 16 16 C 1.38715 * 120.02154 * 0.02610 * 15 14 13 17 17 O 1.35973 * 119.99005 * 179.97438 * 16 15 14 18 18 C 1.42898 * 116.99995 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.46700 * 180.02562 * 18 17 16 20 20 C 1.38239 * 120.00021 * 269.71805 * 19 18 17 21 21 C 1.38236 * 119.99807 * 179.76643 * 20 19 18 22 22 C 1.38226 * 120.00134 * 0.49069 * 21 20 19 23 23 C 1.38235 * 120.00019 * 359.78881 * 22 21 20 24 24 C 1.38227 * 120.00170 * 359.95647 * 23 22 21 25 25 C 1.38723 * 120.02860 * 0.24617 * 16 15 14 26 26 C 1.38092 * 120.01210 * 359.45573 * 25 16 15 27 27 H 0.96994 * 120.01061 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00185 * 359.97438 * 9 7 2 29 29 H 0.97004 * 120.00038 * 5.31453 * 12 10 9 30 30 H 1.08001 * 120.01166 * 0.02562 * 14 13 12 31 31 H 1.08005 * 119.98732 * 179.97438 * 15 14 13 32 32 H 1.09004 * 109.47195 * 299.99360 * 18 17 16 33 33 H 1.08991 * 109.47923 * 59.99903 * 18 17 16 34 34 H 1.08003 * 119.99771 * 0.02562 * 20 19 18 35 35 H 1.08006 * 119.99408 * 180.25635 * 21 20 19 36 36 H 1.08000 * 120.00175 * 179.76558 * 22 21 20 37 37 H 1.08003 * 119.99660 * 179.97438 * 23 22 21 38 38 H 1.08006 * 120.00150 * 179.97438 * 24 23 22 39 39 H 1.08003 * 119.99473 * 179.70291 * 25 16 15 40 40 H 1.08007 * 120.00823 * 180.27306 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2485 1.6179 0.0000 4 1 3.7086 1.3466 0.0006 5 1 1.8897 2.3965 -1.2125 6 1 1.8898 2.3964 1.2125 7 6 2.0092 -1.2027 -0.0005 8 1 3.0892 -1.2026 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9975 -3.5578 -0.0026 11 8 3.2134 -3.5577 -0.0031 12 7 1.3236 -4.7250 -0.0032 13 6 2.0197 -5.9358 0.1081 14 6 3.1807 -6.0022 0.8669 15 6 3.8666 -7.1958 0.9757 16 6 3.3964 -8.3281 0.3268 17 8 4.0726 -9.5029 0.4340 18 6 3.5318 -10.6283 -0.2609 19 6 4.4084 -11.8317 -0.0269 20 6 5.4551 -12.1023 -0.8883 21 6 6.2621 -13.2034 -0.6709 22 6 6.0162 -14.0395 0.4020 23 6 4.9659 -13.7721 1.2601 24 6 4.1621 -12.6682 1.0457 25 6 2.2397 -8.2610 -0.4360 26 6 1.5494 -7.0696 -0.5407 27 1 -0.4851 0.8399 0.0004 28 1 0.3534 -2.3906 -0.0016 29 1 0.3567 -4.7268 -0.0806 30 1 3.5472 -5.1206 1.3719 31 1 4.7699 -7.2475 1.5656 32 1 2.5268 -10.8343 0.1075 33 1 3.4901 -10.4108 -1.3281 34 1 5.6450 -11.4511 -1.7288 35 1 7.0825 -13.4124 -1.3416 36 1 6.6443 -14.9019 0.5697 37 1 4.7735 -14.4257 2.0981 38 1 3.3412 -12.4595 1.7159 39 1 1.8768 -9.1418 -0.9449 40 1 0.6464 -7.0186 -1.1311 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189178763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:02 Heat of formation + Delta-G solvation = -29.048603 kcal Electronic energy + Delta-G solvation = -23473.700797 eV Core-core repulsion = 19832.029959 eV Total energy + Delta-G solvation = -3641.670837 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.52981 -40.74680 -39.85846 -38.32498 -36.09072 -35.16846 -33.31687 -32.96348 -31.93403 -31.80967 -29.56916 -27.48129 -26.68164 -24.02723 -23.50177 -23.29831 -22.26067 -21.43181 -20.03557 -19.34040 -19.04996 -18.01041 -17.71641 -16.93879 -16.81799 -16.57447 -16.06118 -15.91693 -15.61384 -15.47144 -15.19708 -14.95280 -14.51788 -14.29008 -14.25044 -13.90367 -13.62640 -13.52208 -13.42500 -13.25699 -12.95784 -12.40355 -12.34082 -12.09831 -12.06935 -11.86679 -11.73311 -11.57870 -10.96575 -10.70875 -10.05393 -9.92775 -9.83877 -9.80338 -8.58263 -8.43952 -5.92374 0.27110 0.39984 0.45021 0.48672 1.40958 1.43097 1.57028 2.04147 2.26461 2.30451 2.47553 2.87724 3.01503 3.28589 3.72412 3.85965 3.87391 3.94485 4.02476 4.13121 4.26479 4.29285 4.30767 4.41855 4.50603 4.62754 4.68881 4.73884 4.98584 5.03911 5.07921 5.14045 5.33272 5.36698 5.44647 5.53566 5.59958 5.61445 5.62612 5.79416 6.01418 6.07581 6.40473 6.51405 6.78721 7.12674 7.64429 8.12046 8.75083 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.045437 B = 0.001973 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.086671 B =14190.155923 C =14478.883566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.017 4.017 3 Si 0.996 3.004 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.318 4.318 8 H 0.081 0.919 9 N -0.585 5.585 10 C 0.650 3.350 11 O -0.648 6.648 12 N -0.682 5.682 13 C 0.128 3.872 14 C -0.105 4.105 15 C -0.140 4.140 16 C 0.100 3.900 17 O -0.324 6.324 18 C 0.096 3.904 19 C -0.111 4.111 20 C -0.111 4.111 21 C -0.132 4.132 22 C -0.117 4.117 23 C -0.131 4.131 24 C -0.109 4.109 25 C -0.177 4.177 26 C -0.109 4.109 27 H 0.276 0.724 28 H 0.397 0.603 29 H 0.414 0.586 30 H 0.111 0.889 31 H 0.132 0.868 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.163 0.837 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.466 -28.183 -0.684 28.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.216 4.216 3 Si 0.820 3.180 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.448 4.448 8 H 0.099 0.901 9 N -0.226 5.226 10 C 0.351 3.649 11 O -0.533 6.533 12 N -0.331 5.331 13 C 0.032 3.968 14 C -0.126 4.126 15 C -0.159 4.159 16 C 0.055 3.945 17 O -0.239 6.239 18 C 0.022 3.978 19 C -0.111 4.111 20 C -0.130 4.130 21 C -0.150 4.150 22 C -0.135 4.135 23 C -0.149 4.149 24 C -0.127 4.127 25 C -0.196 4.196 26 C -0.130 4.130 27 H 0.085 0.915 28 H 0.231 0.769 29 H 0.251 0.749 30 H 0.129 0.871 31 H 0.150 0.850 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.147 0.853 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.151 0.849 39 H 0.181 0.819 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.526 -27.956 -0.574 28.326 hybrid contribution -0.680 1.221 -0.055 1.399 sum 3.846 -26.735 -0.629 27.018 Atomic orbital electron populations 1.69700 1.06705 1.29039 1.51342 1.25991 0.96634 1.02161 0.96771 0.84819 0.77953 0.77020 0.78207 1.19786 1.19693 1.19738 1.19598 0.92481 0.82888 1.49833 0.90070 1.40959 1.08880 1.03004 1.69748 1.16083 0.85388 0.81070 0.82368 1.90726 1.13500 1.86700 1.62341 1.42367 1.10114 1.02614 1.77973 1.17742 0.95106 0.85564 0.98354 1.20938 0.96026 0.97176 0.98479 1.20298 1.01894 0.90211 1.03496 1.18888 0.92564 0.85668 0.97406 1.86125 1.51282 1.16393 1.70127 1.21775 0.96707 0.81963 0.97393 1.19664 0.98154 0.95861 0.97460 1.21334 0.94260 0.97793 0.99563 1.21467 0.99953 0.94882 0.98711 1.21581 0.97540 0.99924 0.94464 1.21480 0.95513 0.97606 1.00319 1.21336 1.00205 0.94832 0.96320 1.21255 0.95827 0.99567 1.02902 1.20912 1.02155 0.90914 0.99014 0.91478 0.76922 0.74874 0.87144 0.85026 0.89544 0.90015 0.85299 0.84024 0.83693 0.83830 0.84929 0.81930 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.32 13.05 21.65 0.28 -50.03 16 2 C -0.02 -0.90 5.50 84.90 0.47 -0.43 16 3 Si 1.00 43.42 29.55 68.60 2.03 45.45 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.32 -18.23 9.68 84.01 0.81 -17.42 16 8 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 9 N -0.59 -30.47 5.29 -320.70 -1.70 -32.17 16 10 C 0.65 32.20 8.25 179.05 1.48 33.68 16 11 O -0.65 -36.94 13.60 -4.02 -0.05 -37.00 16 12 N -0.68 -25.83 5.35 -317.06 -1.70 -27.53 16 13 C 0.13 4.51 6.28 38.11 0.24 4.75 16 14 C -0.11 -4.01 8.65 22.38 0.19 -3.82 16 15 C -0.14 -4.54 9.98 22.35 0.22 -4.31 16 16 C 0.10 2.76 6.69 22.50 0.15 2.91 16 17 O -0.32 -8.13 10.12 -93.25 -0.94 -9.08 16 18 C 0.10 1.67 4.87 71.24 0.35 2.01 16 19 C -0.11 -1.95 5.51 -19.86 -0.11 -2.06 16 20 C -0.11 -1.83 9.70 22.27 0.22 -1.62 16 21 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 22 C -0.12 -1.45 10.05 22.27 0.22 -1.23 16 23 C -0.13 -1.73 10.05 22.27 0.22 -1.50 16 24 C -0.11 -1.71 9.70 22.27 0.22 -1.49 16 25 C -0.18 -4.11 9.03 22.35 0.20 -3.91 16 26 C -0.11 -2.87 9.96 22.38 0.22 -2.65 16 27 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 28 H 0.40 19.45 7.92 -92.71 -0.73 18.72 16 29 H 0.41 12.64 8.84 -92.70 -0.82 11.82 16 30 H 0.11 4.95 6.41 -2.91 -0.02 4.93 16 31 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 32 H 0.09 1.19 7.61 -2.39 -0.02 1.17 16 33 H 0.08 1.20 7.59 -2.39 -0.02 1.19 16 34 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 36 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 37 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 38 H 0.13 1.74 8.06 -2.91 -0.02 1.71 16 39 H 0.16 2.53 6.29 -2.91 -0.02 2.51 16 40 H 0.16 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -71.78 348.76 2.78 -68.99 By element: Atomic # 1 Polarization: 40.51 SS G_CDS: -0.46 Total: 40.05 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 5.33 Total: 1.32 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -3.11 Total: -109.73 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -1.00 Total: -46.07 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -71.78 2.78 -68.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189178763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.942 kcal (2) G-P(sol) polarization free energy of solvation -71.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds