Wall clock time and date at job start Fri Apr 10 2020 22:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31322 * 1 3 3 Si 1.86797 * 120.00153 * 2 1 4 4 H 1.48501 * 109.47330 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47027 * 299.99893 * 3 2 1 6 6 H 1.48501 * 109.47128 * 59.99336 * 3 2 1 7 7 C 1.39106 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00076 * 197.40440 * 7 2 1 9 9 N 1.36796 * 120.00153 * 17.40489 * 7 2 1 10 10 C 1.46498 * 119.99926 * 213.23104 * 9 7 2 11 11 C 1.50693 * 109.47068 * 301.76408 * 10 9 7 12 12 C 1.38241 * 120.00298 * 273.88042 * 11 10 9 13 13 C 1.38230 * 119.99685 * 179.76599 * 12 11 10 14 14 C 1.38230 * 120.00601 * 0.48668 * 13 12 11 15 15 C 1.38241 * 119.99872 * 359.78929 * 14 13 12 16 16 C 1.38236 * 119.99754 * 359.95433 * 15 14 13 17 17 C 1.34776 * 119.99300 * 33.22856 * 9 7 2 18 18 O 1.21555 * 120.00668 * 6.56757 * 17 9 7 19 19 C 1.47997 * 119.99552 * 186.56745 * 17 9 7 20 20 C 1.39932 * 120.92833 * 318.08263 * 19 17 9 21 21 C 1.38084 * 118.99070 * 180.02562 * 20 19 17 22 22 N 1.31855 * 120.90492 * 359.96721 * 21 20 19 23 23 C 1.31821 * 122.07084 * 0.02726 * 22 21 20 24 24 C 1.50691 * 119.55276 * 179.97438 * 23 22 21 25 25 O 1.42900 * 109.47376 * 179.97438 * 24 23 22 26 26 C 1.38126 * 120.89837 * 0.25380 * 23 22 21 27 27 H 0.97002 * 120.00162 * 4.94676 * 1 2 3 28 28 H 1.08998 * 109.46839 * 61.76912 * 10 9 7 29 29 H 1.08997 * 109.46523 * 181.76954 * 10 9 7 30 30 H 1.07994 * 119.99370 * 359.97438 * 12 11 10 31 31 H 1.08002 * 119.99566 * 180.24835 * 13 12 11 32 32 H 1.08003 * 120.00566 * 179.77079 * 14 13 12 33 33 H 1.08000 * 120.00344 * 179.97438 * 15 14 13 34 34 H 1.08006 * 119.99945 * 179.97438 * 16 15 14 35 35 H 1.07999 * 120.50589 * 0.02562 * 20 19 17 36 36 H 1.08004 * 119.54451 * 179.97438 * 21 20 19 37 37 H 1.09006 * 109.47048 * 300.00155 * 24 23 22 38 38 H 1.09007 * 109.47157 * 59.99679 * 24 23 22 39 39 H 0.96706 * 114.00058 * 180.02562 * 25 24 23 40 40 H 1.07997 * 120.50131 * 179.74598 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 3.7073 1.3463 0.0006 5 1 1.8885 2.3964 -1.2126 6 1 1.8884 2.3965 1.2124 7 6 2.0087 -1.2047 0.0005 8 1 3.0516 -1.2260 0.2803 9 7 1.3718 -2.3624 -0.3533 10 6 1.7486 -3.6287 0.2797 11 6 3.2130 -3.8930 0.0416 12 6 3.6214 -4.5285 -1.1162 13 6 4.9651 -4.7665 -1.3366 14 6 5.8995 -4.3783 -0.3949 15 6 5.4907 -3.7480 0.7655 16 6 4.1474 -3.5052 0.9836 17 6 0.3975 -2.3379 -1.2842 18 8 0.1659 -1.3128 -1.8950 19 6 -0.3904 -3.5594 -1.5630 20 6 0.2287 -4.8116 -1.6445 21 6 -0.5449 -5.9249 -1.9070 22 7 -1.8479 -5.8189 -2.0789 23 6 -2.4709 -4.6592 -2.0104 24 6 -3.9625 -4.6035 -2.2168 25 8 -4.4100 -3.2517 -2.0963 26 6 -1.7742 -3.4936 -1.7577 27 1 -0.4850 0.8369 -0.0724 28 1 1.5596 -3.5695 1.3515 29 1 1.1588 -4.4388 -0.1491 30 1 2.8909 -4.8358 -1.8498 31 1 5.2845 -5.2594 -2.2430 32 1 6.9491 -4.5677 -0.5655 33 1 6.2206 -3.4450 1.5015 34 1 3.8279 -3.0131 1.8904 35 1 1.2954 -4.9060 -1.5042 36 1 -0.0762 -6.8957 -1.9723 37 1 -4.2062 -4.9801 -3.2103 38 1 -4.4567 -5.2179 -1.4641 39 1 -5.3630 -3.1405 -2.2174 40 1 -2.2905 -2.5464 -1.7070 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196238996.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:09 Heat of formation + Delta-G solvation = 23.296495 kcal Electronic energy + Delta-G solvation = -25698.696587 eV Core-core repulsion = 22059.295603 eV Total energy + Delta-G solvation = -3639.400984 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.23075 -39.00970 -37.78563 -36.62553 -34.46772 -32.88803 -31.57574 -31.24477 -30.55195 -30.40484 -26.64703 -25.92198 -25.05271 -23.07816 -22.42586 -21.90515 -20.81382 -19.63283 -17.43289 -17.21985 -16.62349 -15.97185 -15.75115 -15.43833 -15.09550 -14.94035 -14.86390 -14.41210 -14.17456 -13.85146 -13.70975 -13.38285 -13.05018 -12.99872 -12.50611 -12.33764 -11.94819 -11.84836 -11.60341 -11.36298 -11.06692 -10.93787 -10.73406 -10.62027 -10.37747 -10.24167 -10.14708 -9.34958 -9.11174 -9.00523 -8.56119 -8.54424 -8.31567 -8.10231 -7.15667 -6.11951 -3.86720 1.37318 1.57126 1.71251 1.75977 3.29538 3.38270 3.40202 3.91232 3.93403 4.06562 4.27709 4.53879 4.84892 4.96114 5.10968 5.17982 5.19892 5.28064 5.30361 5.31314 5.40538 5.49617 5.57007 5.61626 5.67048 5.76197 5.87074 5.99686 6.02155 6.24679 6.28067 6.38007 6.44638 6.45384 6.72362 6.81928 6.82388 7.05649 7.08209 7.35615 7.54775 7.66750 8.13122 8.24258 8.93074 9.10093 9.56357 10.22150 10.90646 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.010757 B = 0.005939 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.416347 B = 4713.169495 C = 6953.901754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.052 3.948 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.285 1.285 7 C -0.326 4.326 8 H 0.089 0.911 9 N -0.430 5.430 10 C 0.103 3.897 11 C -0.072 4.072 12 C -0.115 4.115 13 C -0.123 4.123 14 C -0.130 4.130 15 C -0.124 4.124 16 C -0.098 4.098 17 C 0.484 3.516 18 O -0.512 6.512 19 C -0.042 4.042 20 C -0.183 4.183 21 C 0.092 3.908 22 N -0.490 5.490 23 C 0.106 3.894 24 C 0.135 3.865 25 O -0.563 6.563 26 C -0.104 4.104 27 H 0.266 0.734 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.383 0.617 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.697 -11.816 -0.588 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.159 4.159 3 Si 0.737 3.263 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.212 1.212 7 C -0.453 4.453 8 H 0.106 0.894 9 N -0.150 5.150 10 C -0.020 4.020 11 C -0.073 4.073 12 C -0.134 4.134 13 C -0.141 4.141 14 C -0.149 4.149 15 C -0.142 4.142 16 C -0.116 4.116 17 C 0.272 3.728 18 O -0.388 6.388 19 C -0.054 4.054 20 C -0.203 4.203 21 C -0.065 4.065 22 N -0.202 5.202 23 C -0.030 4.030 24 C 0.057 3.943 25 O -0.368 6.368 26 C -0.125 4.125 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.117 0.883 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.141 0.859 35 H 0.166 0.834 36 H 0.173 0.827 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.231 0.769 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.547 -11.770 -0.898 11.817 hybrid contribution 0.385 1.459 0.119 1.513 sum 0.932 -10.312 -0.779 10.383 Atomic orbital electron populations 1.69917 1.06512 1.27870 1.39778 1.25116 0.94833 0.99307 0.96628 0.86156 0.79793 0.82786 0.77552 1.19544 1.20664 1.21170 1.19224 0.94330 0.84062 1.47640 0.89379 1.43143 1.33665 1.05233 1.32977 1.21254 0.91135 0.90329 0.99244 1.20249 0.96641 0.96189 0.94225 1.21040 0.95845 0.99613 0.96869 1.21018 0.93181 1.00887 0.99006 1.21021 0.98951 1.00146 0.94752 1.21093 0.95878 0.99607 0.97628 1.21113 0.92624 0.98311 0.99593 1.17457 0.84847 0.86652 0.83832 1.90624 1.68193 1.31379 1.48611 1.21110 0.94605 0.94971 0.94696 1.22757 1.02164 0.93135 1.02249 1.22458 0.88922 0.98392 0.96763 1.66997 1.11306 1.27283 1.14616 1.20710 0.95422 0.88967 0.97941 1.20482 0.89769 0.83613 1.00481 1.86532 1.28549 1.26241 1.95509 1.22016 0.93158 1.00366 0.96912 0.92375 0.91841 0.88326 0.86442 0.86583 0.86770 0.86569 0.85896 0.83384 0.82746 0.91717 0.91695 0.76943 0.83306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -23.83 10.79 55.50 0.60 -23.23 16 2 C 0.05 1.46 4.45 -17.45 -0.08 1.39 16 3 Si 0.91 21.85 29.59 -169.99 -5.03 16.82 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.33 -8.77 8.99 -15.01 -0.13 -8.90 16 8 H 0.09 2.29 6.66 -52.49 -0.35 1.94 16 9 N -0.43 -10.66 2.75 -117.13 -0.32 -10.98 16 10 C 0.10 2.03 5.45 -5.20 -0.03 2.00 16 11 C -0.07 -1.27 4.82 -104.62 -0.50 -1.77 16 12 C -0.12 -1.84 9.42 -39.58 -0.37 -2.21 16 13 C -0.12 -1.73 10.05 -39.59 -0.40 -2.13 16 14 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 15 C -0.12 -1.79 10.05 -39.58 -0.40 -2.18 16 16 C -0.10 -1.62 8.67 -39.58 -0.34 -1.96 16 17 C 0.48 12.67 6.52 -12.26 -0.08 12.59 16 18 O -0.51 -15.55 13.99 5.32 0.07 -15.48 16 19 C -0.04 -0.91 5.42 -104.64 -0.57 -1.48 16 20 C -0.18 -3.18 7.56 -39.00 -0.29 -3.48 16 21 C 0.09 1.40 11.17 -17.60 -0.20 1.21 16 22 N -0.49 -8.17 10.25 -9.54 -0.10 -8.27 16 23 C 0.11 1.87 6.78 -82.64 -0.56 1.31 16 24 C 0.13 1.81 7.58 36.00 0.27 2.08 16 25 O -0.56 -7.77 12.11 -35.23 -0.43 -8.20 16 26 C -0.10 -2.17 9.08 -39.00 -0.35 -2.52 16 27 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.06 1.23 8.06 -51.93 -0.42 0.81 16 29 H 0.10 1.75 3.12 -52.33 -0.16 1.59 16 30 H 0.12 1.74 5.72 -52.49 -0.30 1.44 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.12 1.98 8.06 -52.48 -0.42 1.56 16 35 H 0.15 2.35 3.07 -52.49 -0.16 2.19 16 36 H 0.16 1.75 8.06 -52.48 -0.42 1.33 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 39 H 0.38 3.00 9.12 45.56 0.42 3.41 16 40 H 0.15 3.43 7.00 -52.49 -0.37 3.06 16 LS Contribution 334.50 15.07 5.04 5.04 Total: -1.00 -35.27 334.50 -8.04 -43.30 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -3.44 Total: 9.23 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -4.43 Total: -8.23 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.18 Total: -42.48 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.35 Total: -23.68 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.27 -8.04 -43.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196238996.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.599 kcal (2) G-P(sol) polarization free energy of solvation -35.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds