Wall clock time and date at job start Fri Apr 10 2020 22:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86795 * 119.99854 * 2 1 4 4 H 1.48497 * 109.47378 * 275.10565 * 3 2 1 5 5 H 1.48502 * 109.47300 * 35.11325 * 3 2 1 6 6 H 1.48505 * 109.46879 * 155.10884 * 3 2 1 7 7 C 1.39935 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99972 * 343.90895 * 7 2 1 9 9 C 1.41403 * 119.99489 * 163.91353 * 7 2 1 10 10 C 1.40782 * 120.21376 * 332.29342 * 9 7 2 11 11 C 1.37646 * 119.89163 * 179.97438 * 10 9 7 12 12 C 1.38524 * 120.32299 * 0.25722 * 11 10 9 13 13 C 1.39273 * 120.42859 * 359.48657 * 12 11 10 14 14 N 1.39838 * 119.94959 * 180.25399 * 13 12 11 15 15 C 1.34785 * 120.00021 * 34.88341 * 14 13 12 16 16 O 1.21523 * 119.99673 * 5.23917 * 15 14 13 17 17 C 1.48124 * 120.00069 * 185.24441 * 15 14 13 18 18 C 1.39326 * 119.72799 * 179.97438 * 17 15 14 19 19 C 1.38573 * 119.06139 * 179.97438 * 18 17 15 20 20 C 1.50701 * 120.75706 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.47161 * 89.99867 * 20 19 18 22 22 O 1.42902 * 109.47351 * 180.02562 * 21 20 19 23 23 C 1.38635 * 118.49320 * 359.97438 * 19 18 17 24 24 C 1.38559 * 119.35068 * 0.02562 * 23 19 18 25 25 N 1.31519 * 120.90650 * 359.71779 * 24 23 19 26 26 C 1.38303 * 120.09728 * 0.51412 * 13 12 11 27 27 H 0.97001 * 120.00118 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.04932 * 359.95963 * 10 9 7 29 29 H 1.08000 * 119.83471 * 179.97438 * 11 10 9 30 30 H 1.07999 * 119.78180 * 179.72058 * 12 11 10 31 31 H 0.96998 * 120.00289 * 214.87121 * 14 13 12 32 32 H 1.08003 * 120.46912 * 0.02562 * 18 17 15 33 33 H 1.08998 * 109.47568 * 210.00175 * 20 19 18 34 34 H 1.09006 * 109.47109 * 330.00426 * 20 19 18 35 35 H 1.09002 * 109.47113 * 300.00065 * 21 20 19 36 36 H 1.09000 * 109.47306 * 60.00086 * 21 20 19 37 37 H 0.96693 * 114.00008 * 179.97438 * 22 21 20 38 38 H 1.07990 * 120.32373 * 180.02562 * 23 19 18 39 39 H 1.08000 * 119.54343 * 179.97438 * 24 23 19 40 40 H 1.07999 * 120.16193 * 179.72792 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3819 2.1087 -1.3945 5 1 1.4979 2.6191 0.8053 6 1 3.5897 1.4114 0.5893 7 6 2.0080 -1.2119 0.0005 8 1 1.4996 -2.1287 0.2602 9 6 3.3805 -1.2360 -0.3388 10 6 3.9141 -0.2602 -1.2019 11 6 5.2512 -0.2896 -1.5274 12 6 6.0744 -1.2783 -1.0139 13 6 5.5618 -2.2471 -0.1547 14 7 6.4029 -3.2375 0.3620 15 6 7.6856 -2.9461 0.6564 16 8 8.0855 -1.8024 0.5632 17 6 8.6076 -4.0200 1.0932 18 6 9.9324 -3.7125 1.3955 19 6 10.7829 -4.7277 1.8034 20 6 12.2231 -4.4382 2.1393 21 6 12.3415 -4.0976 3.6262 22 8 13.7072 -3.8225 3.9447 23 6 10.2787 -6.0158 1.8954 24 6 8.9500 -6.2493 1.5790 25 7 8.1632 -5.2662 1.1992 26 6 4.2209 -2.2343 0.1840 27 1 -0.4850 0.8400 -0.0004 28 1 3.2752 0.5101 -1.6082 29 1 5.6595 0.4592 -2.1900 30 1 7.1213 -1.2957 -1.2787 31 1 6.0634 -4.1342 0.5088 32 1 10.2913 -2.6971 1.3139 33 1 12.8313 -5.3152 1.9179 34 1 12.5724 -3.5942 1.5444 35 1 11.7334 -3.2205 3.8476 36 1 11.9922 -4.9414 4.2212 37 1 13.8569 -3.5979 4.8732 38 1 10.9152 -6.8292 2.2106 39 1 8.5541 -7.2516 1.6492 40 1 3.8214 -2.9876 0.8467 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199761100.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:11 Heat of formation + Delta-G solvation = -32.339561 kcal Electronic energy + Delta-G solvation = -23962.019168 eV Core-core repulsion = 20320.205623 eV Total energy + Delta-G solvation = -3641.813544 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.91335 -39.40915 -37.56269 -37.34206 -34.76313 -34.33093 -33.20054 -31.71313 -30.28463 -29.76977 -28.75024 -25.21952 -24.90127 -24.23963 -22.57966 -21.45870 -21.08795 -19.75550 -18.20430 -17.81433 -17.42281 -16.78412 -16.26445 -15.95364 -15.59858 -15.28608 -15.12144 -14.89902 -14.70072 -14.38504 -13.99877 -13.73564 -13.34456 -13.03888 -12.68280 -12.63009 -12.60268 -12.04787 -11.94865 -11.93728 -11.54062 -11.16026 -10.99396 -10.55728 -10.45661 -10.23522 -9.97788 -9.90673 -9.73427 -9.56234 -9.45884 -9.23384 -9.11855 -7.68415 -7.15090 -6.92903 -4.48820 0.40958 0.85153 2.34492 2.64338 2.94404 3.14785 3.24701 3.28816 3.37711 3.61721 3.78207 4.01709 4.03129 4.34764 4.48082 4.53693 4.64085 4.69464 4.77639 4.79051 4.97743 5.16654 5.30084 5.42617 5.47575 5.50722 5.60721 5.90728 6.04361 6.27470 6.34284 6.40387 6.55462 6.73855 6.79238 7.12192 7.12926 7.32379 7.42898 7.53533 7.66562 7.85535 7.91230 8.12796 8.34425 8.47654 8.65097 8.81706 10.09289 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.025224 B = 0.002608 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.802461 B =10732.016081 C =11179.410308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.083 3.917 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.294 1.294 6 H -0.241 1.241 7 C -0.445 4.445 8 H 0.091 0.909 9 C 0.105 3.895 10 C -0.244 4.244 11 C -0.066 4.066 12 C -0.232 4.232 13 C 0.165 3.835 14 N -0.646 5.646 15 C 0.562 3.438 16 O -0.514 6.514 17 C 0.091 3.909 18 C -0.108 4.108 19 C -0.048 4.048 20 C -0.081 4.081 21 C 0.080 3.920 22 O -0.575 6.575 23 C -0.151 4.151 24 C 0.102 3.898 25 N -0.459 5.459 26 C -0.227 4.227 27 H 0.285 0.715 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.413 0.587 32 H 0.150 0.850 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.383 0.617 38 H 0.140 0.860 39 H 0.165 0.835 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.723 -10.829 6.348 24.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.135 4.135 3 Si 0.741 3.259 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.165 1.165 7 C -0.474 4.474 8 H 0.109 0.891 9 C 0.101 3.899 10 C -0.264 4.264 11 C -0.085 4.085 12 C -0.253 4.253 13 C 0.073 3.927 14 N -0.289 5.289 15 C 0.347 3.653 16 O -0.388 6.388 17 C -0.047 4.047 18 C -0.129 4.129 19 C -0.056 4.056 20 C -0.119 4.119 21 C 0.002 3.998 22 O -0.381 6.381 23 C -0.171 4.171 24 C -0.057 4.057 25 N -0.171 5.171 26 C -0.249 4.249 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.249 0.751 32 H 0.167 0.833 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.231 0.769 38 H 0.158 0.842 39 H 0.182 0.818 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 19.928 -10.209 5.451 23.045 hybrid contribution 0.734 0.449 0.872 1.225 sum 20.662 -9.760 6.323 23.709 Atomic orbital electron populations 1.69679 1.08046 1.30244 1.35493 1.26157 0.94770 1.01793 0.90807 0.86298 0.81342 0.79561 0.78706 1.19753 1.22158 1.16464 1.19451 0.92221 0.95917 1.39769 0.89141 1.17485 0.92876 0.90329 0.89172 1.21035 0.95342 1.04060 1.05942 1.20463 0.93464 0.96627 0.97934 1.20294 0.99191 1.00300 1.05521 1.17519 0.89578 0.90514 0.95060 1.43306 1.09763 1.14162 1.61650 1.17871 0.82192 0.87059 0.78167 1.90814 1.76225 1.19928 1.51861 1.21272 0.92922 0.91472 0.99061 1.22057 0.92860 1.01126 0.96841 1.20085 0.95692 0.93189 0.96662 1.20483 0.91354 1.04043 0.95990 1.22106 0.82992 0.99588 0.95068 1.86435 1.26480 1.92501 1.32653 1.22277 0.97277 0.97157 1.00355 1.22819 0.90108 0.98262 0.94552 1.67599 1.38552 0.99631 1.11298 1.20724 0.91396 1.05318 1.07415 0.90455 0.88196 0.88405 0.87638 0.75055 0.83263 0.89489 0.89348 0.93035 0.93275 0.76929 0.84215 0.81820 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.76 13.93 55.55 0.77 -20.98 16 2 C 0.08 2.21 5.44 -17.34 -0.09 2.12 16 3 Si 0.91 21.35 24.40 -169.99 -4.15 17.20 16 4 H -0.27 -6.13 6.70 56.52 0.38 -5.75 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.24 -5.87 6.66 56.52 0.38 -5.49 16 7 C -0.44 -12.11 9.60 -37.74 -0.36 -12.47 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 9 C 0.10 2.71 5.18 -106.85 -0.55 2.15 16 10 C -0.24 -6.06 7.04 -38.84 -0.27 -6.33 16 11 C -0.07 -1.51 10.02 -39.69 -0.40 -1.91 16 12 C -0.23 -5.28 8.66 -39.09 -0.34 -5.62 16 13 C 0.17 3.65 6.24 -83.80 -0.52 3.13 16 14 N -0.65 -11.88 5.31 -10.69 -0.06 -11.94 16 15 C 0.56 10.04 7.53 -12.20 -0.09 9.95 16 16 O -0.51 -10.61 14.10 5.35 0.08 -10.53 16 17 C 0.09 1.28 6.75 -83.01 -0.56 0.72 16 18 C -0.11 -1.27 9.34 -39.05 -0.36 -1.63 16 19 C -0.05 -0.42 5.17 -104.35 -0.54 -0.96 16 20 C -0.08 -0.59 5.76 -27.88 -0.16 -0.75 16 21 C 0.08 0.54 7.03 37.16 0.26 0.80 16 22 O -0.57 -4.13 13.66 -35.23 -0.48 -4.61 16 23 C -0.15 -1.13 9.82 -39.32 -0.39 -1.51 16 24 C 0.10 0.91 11.18 -17.57 -0.20 0.71 16 25 N -0.46 -5.73 9.55 -9.80 -0.09 -5.82 16 26 C -0.23 -5.35 9.70 -38.68 -0.38 -5.73 16 27 H 0.29 6.94 8.30 -40.82 -0.34 6.60 16 28 H 0.10 2.45 4.28 -52.48 -0.22 2.23 16 29 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 30 H 0.11 2.34 6.51 -52.49 -0.34 2.00 16 31 H 0.41 6.61 8.16 -40.82 -0.33 6.28 16 32 H 0.15 1.75 7.64 -52.48 -0.40 1.35 16 33 H 0.09 0.54 8.10 -51.93 -0.42 0.12 16 34 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.38 1.09 9.12 45.56 0.42 1.50 16 38 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 342.65 15.07 5.16 5.16 Total: -1.00 -32.35 342.65 -7.59 -39.94 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -3.87 Total: 8.91 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -4.96 Total: -17.33 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.62 Total: -38.74 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.41 Total: -15.15 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.15 Total: 17.20 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.35 -7.59 -39.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199761100.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.596 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds