Wall clock time and date at job start Fri Apr 10 2020 22:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31589 * 1 3 3 Si 1.86805 * 119.99653 * 2 1 4 4 H 1.48494 * 109.46824 * 269.99827 * 3 2 1 5 5 H 1.48501 * 109.46880 * 29.99959 * 3 2 1 6 6 H 1.48498 * 109.46966 * 149.99780 * 3 2 1 7 7 C 1.38618 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00475 * 180.02562 * 7 2 1 9 9 O 1.34810 * 120.00120 * 0.02562 * 7 2 1 10 10 C 1.35780 * 117.00063 * 174.92770 * 9 7 2 11 11 C 1.38726 * 120.10267 * 5.65611 * 10 9 7 12 12 C 1.38177 * 120.00251 * 180.02562 * 11 10 9 13 13 C 1.38352 * 120.21528 * 359.97438 * 12 11 10 14 14 C 1.38179 * 120.20960 * 0.02562 * 13 12 11 15 15 C 1.38784 * 119.98935 * 359.73806 * 14 13 12 16 16 N 1.39787 * 120.10509 * 180.25420 * 15 14 13 17 17 C 1.39704 * 119.99951 * 254.83620 * 16 15 14 18 18 C 1.38973 * 120.60443 * 354.96656 * 17 16 15 19 19 N 1.31559 * 120.60000 * 179.78222 * 18 17 16 20 20 C 1.32417 * 122.22118 * 0.64887 * 19 18 17 21 21 C 1.37936 * 120.43491 * 359.50978 * 20 19 18 22 22 C 1.38772 * 119.35272 * 0.17970 * 21 20 19 23 23 C 1.50527 * 121.78528 * 180.36571 * 21 20 19 24 24 O 1.42752 * 110.25271 * 344.13567 * 23 21 20 25 25 C 1.43211 * 113.07927 * 51.50724 * 24 23 21 26 26 C 1.50880 * 118.49724 * 179.37647 * 20 19 18 27 27 H 0.96998 * 120.00039 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99451 * 359.97438 * 11 10 9 29 29 H 1.07999 * 119.89163 * 179.97438 * 12 11 10 30 30 H 1.08005 * 119.89282 * 179.97438 * 13 12 11 31 31 H 1.08000 * 120.00533 * 180.02562 * 14 13 12 32 32 H 0.96997 * 119.99788 * 74.84360 * 16 15 14 33 33 H 1.07999 * 119.69789 * 0.06247 * 18 17 16 34 34 H 1.08002 * 120.70293 * 179.97438 * 22 21 20 35 35 H 1.08992 * 109.34521 * 104.38076 * 23 21 20 36 36 H 1.09011 * 109.33837 * 223.90173 * 23 21 20 37 37 H 1.08993 * 109.62644 * 49.03394 * 25 24 23 38 38 H 1.09003 * 109.62241 * 169.60160 * 25 24 23 39 39 H 1.08999 * 109.42223 * 42.84207 * 26 20 19 40 40 H 1.08996 * 109.36890 * 282.98977 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5473 1.4403 0.7001 7 6 2.0090 -1.2004 0.0005 8 1 3.0890 -1.2005 0.0010 9 8 1.3351 -2.3680 0.0005 10 6 2.0706 -3.5043 -0.1059 11 6 3.4563 -3.4402 -0.0903 12 6 4.2028 -4.5979 -0.1993 13 6 3.5729 -5.8234 -0.3236 14 6 2.1932 -5.8975 -0.3401 15 6 1.4349 -4.7407 -0.2263 16 7 0.0390 -4.8133 -0.2374 17 6 -0.6720 -4.4188 -1.3735 18 6 -0.0136 -3.8552 -2.4599 19 7 -0.6827 -3.4876 -3.5313 20 6 -1.9968 -3.6214 -3.6235 21 6 -2.7180 -4.1698 -2.5834 22 6 -2.0534 -4.5776 -1.4355 23 6 -4.2113 -4.3436 -2.6589 24 8 -4.7472 -3.5567 -3.7227 25 6 -4.0794 -3.7714 -4.9713 26 6 -2.6807 -3.1586 -4.8863 27 1 -0.4850 0.8400 -0.0004 28 1 3.9516 -2.4854 0.0062 29 1 5.2814 -4.5459 -0.1873 30 1 4.1614 -6.7250 -0.4089 31 1 1.7049 -6.8559 -0.4369 32 1 -0.4359 -5.1376 0.5436 33 1 1.0576 -3.7220 -2.4260 34 1 -2.5965 -5.0094 -0.6078 35 1 -4.4442 -5.3938 -2.8340 36 1 -4.6594 -4.0292 -1.7162 37 1 -3.9995 -4.8411 -5.1644 38 1 -4.6408 -3.2926 -5.7736 39 1 -2.0951 -3.4708 -5.7509 40 1 -2.7612 -2.0717 -4.8763 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212596267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:16 Heat of formation + Delta-G solvation = -1.823711 kcal Electronic energy + Delta-G solvation = -25522.262881 eV Core-core repulsion = 21881.772604 eV Total energy + Delta-G solvation = -3640.490278 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.40192 -39.33846 -37.87786 -36.60278 -35.13955 -32.62319 -32.31707 -31.73533 -29.96266 -29.04114 -27.42320 -25.61262 -25.41551 -23.66518 -22.65494 -21.68940 -21.33881 -20.04206 -18.05624 -17.61230 -17.19149 -16.47210 -15.96996 -15.79580 -15.34650 -14.88229 -14.73035 -14.62508 -14.29529 -13.89057 -13.83184 -13.55600 -13.28169 -13.03978 -12.78651 -12.50635 -12.39689 -11.93161 -11.76042 -11.58659 -11.38553 -11.08976 -11.03732 -10.93702 -10.71737 -10.52886 -10.12320 -9.81305 -9.50171 -8.94169 -8.88678 -8.80462 -8.24585 -7.39767 -6.93914 -6.50185 -4.09552 1.67101 1.84249 2.02386 2.23293 3.09506 3.11529 3.15355 3.83015 3.91048 3.93724 4.31904 4.40757 4.73855 4.89523 5.00515 5.03334 5.11809 5.23847 5.33639 5.40143 5.41161 5.54746 5.65672 5.69289 5.72152 5.83705 5.86924 5.96443 5.99272 6.13242 6.20382 6.46864 6.54012 6.56840 6.65465 6.94356 6.99737 7.08415 7.15552 7.22120 7.26215 7.54334 7.89125 7.93028 8.17836 8.64135 8.94000 9.59937 10.65613 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.010920 B = 0.005259 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.475776 B = 5323.298922 C = 7132.508637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.044 3.956 3 Si 0.939 3.061 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.397 4.397 8 H 0.092 0.908 9 O -0.157 6.157 10 C 0.147 3.853 11 C -0.231 4.231 12 C -0.068 4.068 13 C -0.211 4.211 14 C -0.071 4.071 15 C 0.045 3.955 16 N -0.668 5.668 17 C 0.188 3.812 18 C 0.074 3.926 19 N -0.448 5.448 20 C 0.066 3.934 21 C -0.131 4.131 22 C -0.155 4.155 23 C 0.111 3.889 24 O -0.376 6.376 25 C 0.062 3.938 26 C -0.091 4.091 27 H 0.271 0.729 28 H 0.130 0.870 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.400 0.600 33 H 0.151 0.849 34 H 0.128 0.872 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.385 -9.778 -4.357 11.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.162 4.162 3 Si 0.764 3.236 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.473 4.473 8 H 0.110 0.890 9 O -0.058 6.058 10 C 0.090 3.910 11 C -0.251 4.251 12 C -0.086 4.086 13 C -0.231 4.231 14 C -0.091 4.091 15 C -0.048 4.048 16 N -0.292 5.292 17 C 0.083 3.917 18 C -0.091 4.091 19 N -0.155 5.155 20 C -0.071 4.071 21 C -0.133 4.133 22 C -0.185 4.185 23 C 0.033 3.967 24 O -0.294 6.294 25 C -0.015 4.015 26 C -0.129 4.129 27 H 0.081 0.919 28 H 0.148 0.852 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.236 0.764 33 H 0.168 0.832 34 H 0.146 0.854 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.386 -9.018 -5.036 10.869 hybrid contribution 0.381 0.317 1.259 1.352 sum -3.005 -8.701 -3.777 9.950 Atomic orbital electron populations 1.70057 1.05907 1.27784 1.44553 1.25283 0.95810 0.98821 0.96257 0.85742 0.78934 0.80122 0.78850 1.19744 1.20229 1.19155 1.21331 0.91814 0.80783 1.53332 0.89039 1.84032 1.33919 1.11124 1.76764 1.19735 0.90414 0.87959 0.92940 1.21126 0.93279 0.99283 1.11374 1.20837 0.98707 0.92273 0.96821 1.20478 0.93709 0.97173 1.11697 1.20844 0.93687 0.96264 0.98318 1.16592 0.82289 0.90866 1.15092 1.41322 1.03060 1.70956 1.13879 1.18773 0.91265 0.93199 0.88500 1.22215 1.00173 0.98191 0.88506 1.67287 1.08490 1.14048 1.25718 1.20382 0.89569 1.01328 0.95859 1.20620 0.97006 1.00867 0.94838 1.20623 0.92356 1.06733 0.98817 1.21288 0.88878 0.95043 0.91453 1.88059 1.57337 1.66069 1.17964 1.22639 0.92511 0.99827 0.86563 1.20834 0.95143 1.01874 0.95027 0.91948 0.85204 0.87216 0.87243 0.86805 0.76394 0.83202 0.85391 0.91994 0.87866 0.92807 0.88308 0.89612 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.78 13.67 55.48 0.76 -24.02 16 2 C 0.04 1.20 5.49 -17.52 -0.10 1.11 16 3 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.40 -10.78 9.49 30.87 0.29 -10.48 16 8 H 0.09 2.30 5.21 -52.49 -0.27 2.03 16 9 O -0.16 -4.24 9.22 0.01 0.00 -4.24 16 10 C 0.15 3.34 5.52 -38.92 -0.21 3.12 16 11 C -0.23 -4.75 9.16 -39.42 -0.36 -5.11 16 12 C -0.07 -1.17 10.04 -39.56 -0.40 -1.57 16 13 C -0.21 -3.40 10.04 -39.56 -0.40 -3.80 16 14 C -0.07 -1.20 9.97 -39.40 -0.39 -1.60 16 15 C 0.05 0.89 4.91 -83.54 -0.41 0.48 16 16 N -0.67 -12.41 5.18 -8.21 -0.04 -12.46 16 17 C 0.19 3.71 6.52 -83.65 -0.55 3.17 16 18 C 0.07 1.62 10.15 -17.40 -0.18 1.45 16 19 N -0.45 -9.55 10.22 -9.25 -0.09 -9.65 16 20 C 0.07 1.23 6.68 -82.36 -0.55 0.68 16 21 C -0.13 -2.22 5.80 -104.62 -0.61 -2.83 16 22 C -0.15 -2.67 9.68 -39.03 -0.38 -3.05 16 23 C 0.11 1.50 6.66 35.92 0.24 1.74 16 24 O -0.38 -5.41 10.81 -35.23 -0.38 -5.80 16 25 C 0.06 0.74 6.84 37.13 0.25 0.99 16 26 C -0.09 -1.34 6.24 -27.82 -0.17 -1.51 16 27 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.13 2.69 5.64 -52.49 -0.30 2.40 16 29 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 30 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 31 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.40 6.42 8.85 -40.82 -0.36 6.06 16 33 H 0.15 3.48 6.34 -52.49 -0.33 3.15 16 34 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 1.28 8.14 -51.92 -0.42 0.85 16 37 H 0.05 0.57 8.07 -51.93 -0.42 0.15 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 338.52 15.07 5.10 5.10 Total: -1.00 -31.97 338.52 -8.22 -40.19 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -4.62 Total: 12.59 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -3.91 Total: -17.21 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.62 Total: -46.12 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.38 Total: -10.04 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.97 -8.22 -40.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.365 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds