Wall clock time and date at job start Fri Apr 10 2020 22:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31589 * 1 3 3 Si 1.86805 * 119.99653 * 2 1 4 4 H 1.48494 * 109.46824 * 269.99827 * 3 2 1 5 5 H 1.48501 * 109.46880 * 29.99959 * 3 2 1 6 6 H 1.48498 * 109.46966 * 149.99780 * 3 2 1 7 7 C 1.38618 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00475 * 180.02562 * 7 2 1 9 9 O 1.34810 * 120.00120 * 0.02562 * 7 2 1 10 10 C 1.35780 * 117.00063 * 174.92770 * 9 7 2 11 11 C 1.38726 * 120.10267 * 5.65611 * 10 9 7 12 12 C 1.38177 * 120.00251 * 180.02562 * 11 10 9 13 13 C 1.38352 * 120.21528 * 359.97438 * 12 11 10 14 14 C 1.38179 * 120.20960 * 0.02562 * 13 12 11 15 15 C 1.38784 * 119.98935 * 359.73806 * 14 13 12 16 16 N 1.39787 * 120.10509 * 180.25420 * 15 14 13 17 17 C 1.39704 * 119.99951 * 254.83620 * 16 15 14 18 18 C 1.38973 * 120.60443 * 354.96656 * 17 16 15 19 19 N 1.31559 * 120.60000 * 179.78222 * 18 17 16 20 20 C 1.32417 * 122.22118 * 0.64887 * 19 18 17 21 21 C 1.37936 * 120.43491 * 359.50978 * 20 19 18 22 22 C 1.38772 * 119.35272 * 0.17970 * 21 20 19 23 23 C 1.50527 * 121.78528 * 180.36571 * 21 20 19 24 24 O 1.42752 * 110.25271 * 344.13567 * 23 21 20 25 25 C 1.43211 * 113.07927 * 51.50724 * 24 23 21 26 26 C 1.50880 * 118.49724 * 179.37647 * 20 19 18 27 27 H 0.96998 * 120.00039 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99451 * 359.97438 * 11 10 9 29 29 H 1.07999 * 119.89163 * 179.97438 * 12 11 10 30 30 H 1.08005 * 119.89282 * 179.97438 * 13 12 11 31 31 H 1.08000 * 120.00533 * 180.02562 * 14 13 12 32 32 H 0.96997 * 119.99788 * 74.84360 * 16 15 14 33 33 H 1.07999 * 119.69789 * 0.06247 * 18 17 16 34 34 H 1.08002 * 120.70293 * 179.97438 * 22 21 20 35 35 H 1.08992 * 109.34521 * 104.38076 * 23 21 20 36 36 H 1.09011 * 109.33837 * 223.90173 * 23 21 20 37 37 H 1.08993 * 109.62644 * 49.03394 * 25 24 23 38 38 H 1.09003 * 109.62241 * 169.60160 * 25 24 23 39 39 H 1.08999 * 109.42223 * 42.84207 * 26 20 19 40 40 H 1.08996 * 109.36890 * 282.98977 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5473 1.4403 0.7001 7 6 2.0090 -1.2004 0.0005 8 1 3.0890 -1.2005 0.0010 9 8 1.3351 -2.3680 0.0005 10 6 2.0706 -3.5043 -0.1059 11 6 3.4563 -3.4402 -0.0903 12 6 4.2028 -4.5979 -0.1993 13 6 3.5729 -5.8234 -0.3236 14 6 2.1932 -5.8975 -0.3401 15 6 1.4349 -4.7407 -0.2263 16 7 0.0390 -4.8133 -0.2374 17 6 -0.6720 -4.4188 -1.3735 18 6 -0.0136 -3.8552 -2.4599 19 7 -0.6827 -3.4876 -3.5313 20 6 -1.9968 -3.6214 -3.6235 21 6 -2.7180 -4.1698 -2.5834 22 6 -2.0534 -4.5776 -1.4355 23 6 -4.2113 -4.3436 -2.6589 24 8 -4.7472 -3.5567 -3.7227 25 6 -4.0794 -3.7714 -4.9713 26 6 -2.6807 -3.1586 -4.8863 27 1 -0.4850 0.8400 -0.0004 28 1 3.9516 -2.4854 0.0062 29 1 5.2814 -4.5459 -0.1873 30 1 4.1614 -6.7250 -0.4089 31 1 1.7049 -6.8559 -0.4369 32 1 -0.4359 -5.1376 0.5436 33 1 1.0576 -3.7220 -2.4260 34 1 -2.5965 -5.0094 -0.6078 35 1 -4.4442 -5.3938 -2.8340 36 1 -4.6594 -4.0292 -1.7162 37 1 -3.9995 -4.8411 -5.1644 38 1 -4.6408 -3.2926 -5.7736 39 1 -2.0951 -3.4708 -5.7509 40 1 -2.7612 -2.0717 -4.8763 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212596267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:15 Heat of formation + Delta-G solvation = -23.339577 kcal Electronic energy + Delta-G solvation = -25523.195879 eV Core-core repulsion = 21881.772604 eV Total energy + Delta-G solvation = -3641.423276 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.79641 -40.87264 -39.14639 -38.23339 -36.58979 -34.30078 -33.89830 -33.02808 -31.34894 -30.56165 -28.88252 -27.32801 -26.87917 -24.89708 -24.05308 -23.26818 -22.77595 -21.40010 -19.84764 -19.20326 -18.57806 -17.92800 -17.28436 -17.04336 -16.71261 -16.48270 -16.34963 -15.98131 -15.60620 -15.37989 -15.36421 -15.09816 -14.77667 -14.52010 -14.24004 -13.85774 -13.64416 -13.58511 -13.22033 -13.04591 -12.75163 -12.57198 -12.56081 -12.48843 -12.19938 -11.84278 -11.60569 -11.25237 -10.95627 -10.83029 -10.36183 -10.14083 -9.72145 -9.03323 -8.50120 -8.41209 -6.14572 0.21991 0.36768 0.55095 0.70784 1.29883 1.39235 1.46218 2.12730 2.41695 2.80417 2.84151 2.92392 3.12935 3.44851 3.48431 3.65765 3.85693 3.97173 4.12137 4.16975 4.25692 4.30340 4.35951 4.43030 4.50392 4.55254 4.65509 4.69244 4.75415 4.79918 4.94510 5.03210 5.08175 5.11091 5.14023 5.26589 5.53985 5.59903 5.68308 5.73279 5.95367 6.07298 6.12977 6.42588 6.77211 6.96917 7.15151 7.77218 8.72740 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.010920 B = 0.005259 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.475776 B = 5323.298922 C = 7132.508637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.018 4.018 3 Si 1.009 2.991 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.412 4.412 8 H 0.099 0.901 9 O -0.206 6.206 10 C 0.110 3.890 11 C -0.246 4.246 12 C -0.067 4.067 13 C -0.184 4.184 14 C -0.070 4.070 15 C 0.044 3.956 16 N -0.666 5.666 17 C 0.175 3.825 18 C 0.039 3.961 19 N -0.477 5.477 20 C 0.045 3.955 21 C -0.129 4.129 22 C -0.152 4.152 23 C 0.111 3.889 24 O -0.391 6.391 25 C 0.066 3.934 26 C -0.092 4.092 27 H 0.268 0.732 28 H 0.118 0.882 29 H 0.146 0.854 30 H 0.155 0.845 31 H 0.147 0.853 32 H 0.411 0.589 33 H 0.120 0.880 34 H 0.164 0.836 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.074 0.926 38 H 0.128 0.872 39 H 0.096 0.904 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.371 -12.475 -4.618 13.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.216 4.216 3 Si 0.829 3.171 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.173 1.173 7 C -0.488 4.488 8 H 0.116 0.884 9 O -0.112 6.112 10 C 0.057 3.943 11 C -0.266 4.266 12 C -0.085 4.085 13 C -0.203 4.203 14 C -0.090 4.090 15 C -0.050 4.050 16 N -0.292 5.292 17 C 0.069 3.931 18 C -0.125 4.125 19 N -0.186 5.186 20 C -0.093 4.093 21 C -0.132 4.132 22 C -0.182 4.182 23 C 0.034 3.966 24 O -0.310 6.310 25 C -0.011 4.011 26 C -0.130 4.130 27 H 0.077 0.923 28 H 0.136 0.864 29 H 0.164 0.836 30 H 0.173 0.827 31 H 0.165 0.835 32 H 0.249 0.751 33 H 0.138 0.862 34 H 0.182 0.818 35 H 0.115 0.885 36 H 0.135 0.865 37 H 0.092 0.908 38 H 0.146 0.854 39 H 0.115 0.885 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.319 -11.781 -5.282 13.330 hybrid contribution 0.488 0.790 1.264 1.569 sum -2.831 -10.990 -4.018 12.039 Atomic orbital electron populations 1.70211 1.07811 1.28299 1.48420 1.26435 0.96705 1.02445 0.96032 0.84713 0.78128 0.75278 0.78945 1.19497 1.19697 1.17335 1.21743 0.92350 0.81698 1.53005 0.88392 1.84005 1.35028 1.11882 1.80239 1.20358 0.91644 0.88088 0.94178 1.21284 0.92868 1.00438 1.12045 1.21249 1.00472 0.91366 0.95420 1.21081 0.93644 0.98291 1.07253 1.21266 0.94250 0.96461 0.96978 1.16983 0.83198 0.90794 1.14007 1.41296 1.02822 1.70966 1.14110 1.18868 0.92445 0.93512 0.88225 1.21892 0.99280 1.01025 0.90286 1.67210 1.10299 1.14898 1.26163 1.21128 0.88935 1.01305 0.97966 1.21159 0.99262 0.98903 0.93862 1.21078 0.91404 1.05758 0.99952 1.21494 0.85913 0.96988 0.92160 1.88050 1.57431 1.66675 1.18819 1.22817 0.90623 1.01165 0.86471 1.20976 0.97047 1.01232 0.93725 0.92314 0.86411 0.83582 0.82711 0.83535 0.75087 0.86209 0.81832 0.88518 0.86534 0.90772 0.85377 0.88527 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.71 13.67 21.61 0.30 -56.42 16 2 C -0.02 -1.02 5.49 84.82 0.47 -0.55 16 3 Si 1.01 44.10 29.55 68.60 2.03 46.13 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 6 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.41 -23.85 9.49 67.91 0.64 -23.20 16 8 H 0.10 5.25 5.21 -2.91 -0.02 5.23 16 9 O -0.21 -11.97 9.22 -22.88 -0.21 -12.18 16 10 C 0.11 5.26 5.52 22.70 0.13 5.38 16 11 C -0.25 -10.34 9.16 22.37 0.21 -10.13 16 12 C -0.07 -2.14 10.04 22.28 0.22 -1.92 16 13 C -0.18 -5.18 10.04 22.28 0.22 -4.96 16 14 C -0.07 -2.19 9.97 22.39 0.22 -1.97 16 15 C 0.04 1.75 4.91 38.32 0.19 1.94 16 16 N -0.67 -25.09 5.18 -179.87 -0.93 -26.03 16 17 C 0.17 7.09 6.52 38.29 0.25 7.34 16 18 C 0.04 1.80 10.15 84.91 0.86 2.67 16 19 N -0.48 -21.48 10.22 -183.17 -1.87 -23.35 16 20 C 0.05 1.70 6.68 42.46 0.28 1.99 16 21 C -0.13 -4.27 5.80 -19.86 -0.12 -4.39 16 22 C -0.15 -5.14 9.68 22.63 0.22 -4.92 16 23 C 0.11 2.70 6.66 71.18 0.47 3.17 16 24 O -0.39 -10.26 10.81 -148.98 -1.61 -11.87 16 25 C 0.07 1.41 6.84 71.96 0.49 1.90 16 26 C -0.09 -2.67 6.24 29.89 0.19 -2.48 16 27 H 0.27 15.59 8.31 -92.71 -0.77 14.81 16 28 H 0.12 5.11 5.64 -2.91 -0.02 5.09 16 29 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 30 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 31 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 32 H 0.41 13.12 8.85 -92.71 -0.82 12.30 16 33 H 0.12 6.10 6.34 -2.91 -0.02 6.08 16 34 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 35 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.12 2.53 8.14 -2.38 -0.02 2.51 16 37 H 0.07 1.31 8.07 -2.39 -0.02 1.29 16 38 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -77.45 338.52 2.92 -74.54 By element: Atomic # 1 Polarization: 39.05 SS G_CDS: 0.27 Total: 39.32 kcal Atomic # 6 Polarization: -35.09 SS G_CDS: 4.95 Total: -30.14 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -2.51 Total: -105.80 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -1.82 Total: -24.05 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -77.45 2.92 -74.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.197 kcal (2) G-P(sol) polarization free energy of solvation -77.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds