Wall clock time and date at job start Fri Apr 10 2020 22:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86796 * 120.00023 * 2 1 4 4 H 1.48505 * 109.46967 * 269.99843 * 3 2 1 5 5 H 1.48504 * 109.47137 * 29.99706 * 3 2 1 6 6 H 1.48502 * 109.47356 * 150.00085 * 3 2 1 7 7 C 1.38620 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 180.02562 * 7 2 1 9 9 O 1.34805 * 119.99752 * 0.02562 * 7 2 1 10 10 C 1.35789 * 117.00163 * 174.60245 * 9 7 2 11 11 C 1.38922 * 119.98703 * 6.82530 * 10 9 7 12 12 C 1.37989 * 120.00337 * 180.02562 * 11 10 9 13 13 C 1.38972 * 119.99626 * 359.97438 * 12 11 10 14 14 N 1.39796 * 120.00798 * 180.02562 * 13 12 11 15 15 C 1.39683 * 119.99646 * 154.14670 * 14 13 12 16 16 C 1.38958 * 120.07928 * 328.85107 * 15 14 13 17 17 C 1.38071 * 119.92044 * 179.97438 * 16 15 14 18 18 C 1.38308 * 120.07965 * 359.97438 * 17 16 15 19 19 C 1.38272 * 120.15446 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.95946 * 180.02562 * 19 18 17 21 21 C 1.50701 * 109.47085 * 90.00690 * 20 19 18 22 22 N 1.34783 * 120.00187 * 180.02562 * 21 20 19 23 23 O 1.21278 * 120.00073 * 359.97438 * 21 20 19 24 24 C 1.38113 * 120.07868 * 359.74826 * 19 18 17 25 25 C 1.38975 * 119.98287 * 0.27851 * 13 12 11 26 26 C 1.37990 * 119.99320 * 359.44351 * 25 13 12 27 27 H 0.96998 * 120.00091 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99372 * 0.02562 * 11 10 9 29 29 H 1.08008 * 120.00135 * 179.97438 * 12 11 10 30 30 H 0.96995 * 119.99925 * 333.86656 * 14 13 12 31 31 H 1.08001 * 120.03678 * 0.02562 * 16 15 14 32 32 H 1.08005 * 119.95606 * 180.02562 * 17 16 15 33 33 H 1.08002 * 119.92353 * 180.02562 * 18 17 16 34 34 H 1.09005 * 109.47016 * 209.99996 * 20 19 18 35 35 H 1.08994 * 109.47650 * 330.00442 * 20 19 18 36 36 H 0.96993 * 119.99706 * 359.97438 * 22 21 20 37 37 H 0.96998 * 120.00085 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.04131 * 180.25637 * 24 19 18 39 39 H 1.08000 * 120.00063 * 179.72320 * 25 13 12 40 40 H 1.08001 * 119.99613 * 180.30132 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5474 1.4402 0.7000 7 6 2.0089 -1.2005 0.0005 8 1 3.0889 -1.2004 0.0010 9 8 1.3348 -2.3679 0.0005 10 6 2.0697 -3.5041 -0.1127 11 6 3.4570 -3.4400 -0.0791 12 6 4.2042 -4.5944 -0.1947 13 6 3.5687 -5.8212 -0.3442 14 7 4.3253 -6.9909 -0.4609 15 6 3.7781 -8.2177 -0.0778 16 6 2.8468 -8.2737 0.9520 17 6 2.3077 -9.4880 1.3276 18 6 2.6931 -10.6477 0.6798 19 6 3.6195 -10.5956 -0.3453 20 6 4.0359 -11.8618 -1.0485 21 6 3.1244 -12.1070 -2.2233 22 7 3.3080 -13.1900 -3.0043 23 8 2.2249 -11.3303 -2.4654 24 6 4.1595 -9.3838 -0.7294 25 6 2.1809 -5.8843 -0.3832 26 6 1.4342 -4.7303 -0.2617 27 1 -0.4850 0.8400 -0.0004 28 1 3.9508 -2.4866 0.0376 29 1 5.2828 -4.5444 -0.1689 30 1 5.2288 -6.9511 -0.8115 31 1 2.5445 -7.3684 1.4574 32 1 1.5834 -9.5322 2.1276 33 1 2.2694 -11.5962 0.9754 34 1 5.0627 -11.7613 -1.4002 35 1 3.9695 -12.7008 -0.3559 36 1 4.0271 -13.8113 -2.8105 37 1 2.7211 -13.3480 -3.7603 38 1 4.8800 -9.3433 -1.5329 39 1 1.6869 -6.8371 -0.5039 40 1 0.3556 -4.7799 -0.2871 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212610367.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:27 Heat of formation + Delta-G solvation = -10.077509 kcal Electronic energy + Delta-G solvation = -23923.953936 eV Core-core repulsion = 20283.105747 eV Total energy + Delta-G solvation = -3640.848189 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.20855 -39.42909 -38.57475 -36.91209 -34.53448 -33.94406 -32.46251 -32.14365 -30.35134 -29.78508 -27.59882 -27.12342 -25.17889 -22.80229 -22.19776 -21.65815 -21.05246 -20.06531 -18.04669 -17.72966 -17.11088 -17.00705 -16.82084 -16.34230 -15.70783 -15.52580 -14.53113 -14.50235 -14.20974 -14.09640 -13.77763 -13.69493 -13.47341 -13.12179 -12.81574 -12.68772 -12.40022 -12.22348 -11.83802 -11.62795 -11.55516 -11.20039 -11.07820 -10.97643 -10.64315 -10.41793 -10.27574 -9.98596 -9.92978 -9.30534 -8.79739 -8.69624 -8.22466 -7.96319 -6.50597 -6.39351 -3.96947 1.43316 1.54217 2.16301 2.41234 2.46382 3.15242 3.16348 3.20811 3.26042 3.67471 3.97288 4.00826 4.46764 4.60575 4.77661 4.85196 5.08603 5.13055 5.15964 5.30043 5.36071 5.47847 5.58455 5.66504 5.72993 5.84226 6.04599 6.18261 6.24458 6.41506 6.46455 6.55281 6.56981 6.68949 6.82745 6.84889 6.99102 7.06427 7.10792 7.26531 7.39598 7.58318 7.92742 8.01350 8.04794 8.07417 9.06016 9.77732 10.78774 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.031104 B = 0.002342 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.988361 B =11952.767058 C =12023.946354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.037 3.963 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.389 4.389 8 H 0.090 0.910 9 O -0.181 6.181 10 C 0.133 3.867 11 C -0.206 4.206 12 C -0.112 4.112 13 C 0.078 3.922 14 N -0.685 5.685 15 C 0.202 3.798 16 C -0.164 4.164 17 C -0.084 4.084 18 C -0.152 4.152 19 C -0.041 4.041 20 C -0.100 4.100 21 C 0.514 3.486 22 N -0.862 5.862 23 O -0.525 6.525 24 C -0.164 4.164 25 C -0.111 4.111 26 C -0.162 4.162 27 H 0.269 0.731 28 H 0.130 0.870 29 H 0.109 0.891 30 H 0.401 0.599 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.400 0.600 37 H 0.400 0.600 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.094 -24.648 -1.368 27.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.466 4.466 8 H 0.108 0.892 9 O -0.085 6.085 10 C 0.079 3.921 11 C -0.226 4.226 12 C -0.133 4.133 13 C -0.017 4.017 14 N -0.308 5.308 15 C 0.102 3.898 16 C -0.186 4.186 17 C -0.103 4.103 18 C -0.172 4.172 19 C -0.042 4.042 20 C -0.140 4.140 21 C 0.298 3.702 22 N -0.427 5.427 23 O -0.399 6.399 24 C -0.186 4.186 25 C -0.132 4.132 26 C -0.182 4.182 27 H 0.079 0.921 28 H 0.148 0.852 29 H 0.127 0.873 30 H 0.235 0.765 31 H 0.147 0.853 32 H 0.139 0.861 33 H 0.132 0.868 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.228 0.772 37 H 0.231 0.769 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.017 -23.721 -1.301 25.782 hybrid contribution 1.037 0.419 -0.470 1.214 sum 11.055 -23.302 -1.772 25.852 Atomic orbital electron populations 1.70050 1.05897 1.27523 1.46496 1.25265 0.95838 0.98759 0.96777 0.85730 0.78881 0.80259 0.78644 1.19955 1.20320 1.19280 1.21276 0.91685 0.80948 1.52689 0.89236 1.83986 1.34102 1.11279 1.79109 1.19338 0.90179 0.88207 0.94359 1.20988 0.93697 0.98413 1.09469 1.20393 0.98427 0.91209 1.03235 1.17282 0.90615 0.85276 1.08524 1.41845 1.16434 1.02673 1.69859 1.17671 0.94549 0.85315 0.92275 1.21092 1.01161 0.98756 0.97593 1.20880 0.98537 0.91886 0.99009 1.20695 0.99686 0.98228 0.98601 1.18867 0.96928 0.92693 0.95752 1.20636 0.99766 0.97885 0.95684 1.20659 0.85131 0.80613 0.83770 1.43917 1.37429 1.27653 1.33661 1.90824 1.32597 1.45216 1.71271 1.20508 1.05505 0.91480 1.01133 1.20523 0.91864 0.97763 1.03049 1.20079 0.99603 0.89892 1.08607 0.92116 0.85239 0.87303 0.76451 0.85333 0.86096 0.86844 0.88071 0.87944 0.77248 0.76913 0.86601 0.86380 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.69 13.67 55.48 0.76 -24.93 16 2 C 0.04 1.04 5.49 -17.52 -0.10 0.94 16 3 Si 0.94 20.75 29.55 -169.99 -5.02 15.72 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.39 -10.98 9.48 30.87 0.29 -10.69 16 8 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 9 O -0.18 -5.22 9.75 0.00 0.00 -5.22 16 10 C 0.13 3.24 6.65 -39.08 -0.26 2.98 16 11 C -0.21 -4.48 9.16 -39.42 -0.36 -4.84 16 12 C -0.11 -2.05 9.94 -39.40 -0.39 -2.45 16 13 C 0.08 1.39 6.05 -83.68 -0.51 0.88 16 14 N -0.68 -10.10 5.47 -8.37 -0.05 -10.14 16 15 C 0.20 2.92 5.93 -83.76 -0.50 2.42 16 16 C -0.16 -2.40 7.75 -39.38 -0.31 -2.71 16 17 C -0.08 -1.07 10.04 -39.62 -0.40 -1.47 16 18 C -0.15 -1.77 9.70 -39.54 -0.38 -2.16 16 19 C -0.04 -0.47 4.37 -104.66 -0.46 -0.92 16 20 C -0.10 -0.73 5.83 -29.03 -0.17 -0.89 16 21 C 0.51 4.86 8.09 -10.98 -0.09 4.77 16 22 N -0.86 -4.34 8.87 31.22 0.28 -4.06 16 23 O -0.52 -7.95 16.87 5.56 0.09 -7.86 16 24 C -0.16 -2.07 9.61 -39.37 -0.38 -2.45 16 25 C -0.11 -2.14 7.85 -39.40 -0.31 -2.44 16 26 C -0.16 -3.53 9.98 -39.42 -0.39 -3.93 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.13 2.80 5.65 -52.49 -0.30 2.50 16 29 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 30 H 0.40 4.90 8.89 -40.82 -0.36 4.54 16 31 H 0.13 2.02 6.55 -52.49 -0.34 1.68 16 32 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.10 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.10 0.48 8.08 -51.93 -0.42 0.06 16 36 H 0.40 0.59 8.83 -40.82 -0.36 0.23 16 37 H 0.40 1.88 8.93 -40.82 -0.36 1.52 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.12 2.16 6.34 -52.49 -0.33 1.83 16 40 H 0.12 2.55 8.06 -52.49 -0.42 2.12 16 LS Contribution 346.59 15.07 5.22 5.22 Total: -1.00 -35.53 346.59 -7.84 -43.37 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -4.42 Total: 10.84 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -4.70 Total: -22.95 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.99 Total: -39.13 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.53 -7.84 -43.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212610367.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.289 kcal (2) G-P(sol) polarization free energy of solvation -35.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds