Wall clock time and date at job start Fri Apr 10 2020 22:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00061 * 2 1 4 4 O 1.20836 * 119.99962 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00536 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.46765 * 60.00010 * 5 3 2 7 7 O 1.42891 * 109.47475 * 179.97438 * 5 3 2 8 8 C 1.35669 * 117.00757 * 274.51101 * 7 5 3 9 9 C 1.39320 * 119.81617 * 5.39332 * 8 7 5 10 10 C 1.36427 * 120.18903 * 180.02562 * 9 8 7 11 11 C 1.40839 * 119.81016 * 0.27123 * 10 9 8 12 12 C 1.41213 * 120.17868 * 179.72904 * 11 10 9 13 13 H 1.07997 * 120.00293 * 27.95325 * 12 11 10 14 14 C 1.39891 * 119.99719 * 207.96471 * 12 11 10 15 15 N 1.30875 * 120.00403 * 12.08574 * 14 12 11 16 16 Si 1.86803 * 119.99696 * 192.08871 * 14 12 11 17 17 H 1.48501 * 109.46989 * 59.99802 * 16 14 12 18 18 H 1.48495 * 109.47033 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47217 * 299.99686 * 16 14 12 20 20 C 1.40832 * 119.64074 * 359.43073 * 11 10 9 21 21 C 1.36436 * 119.81223 * 0.57410 * 20 11 10 22 22 C 1.50697 * 109.47095 * 300.00721 * 5 3 2 23 23 C 1.38243 * 119.99534 * 279.72239 * 22 5 3 24 24 C 1.38234 * 119.99582 * 179.78939 * 23 22 5 25 25 C 1.38228 * 120.00421 * 0.43820 * 24 23 22 26 26 C 1.38240 * 119.99908 * 359.81579 * 25 24 23 27 27 C 1.38228 * 119.99993 * 359.97438 * 26 25 24 28 28 H 1.08995 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46723 * 300.00105 * 1 2 3 30 30 H 1.08994 * 109.47132 * 59.99801 * 1 2 3 31 31 H 1.08003 * 119.90373 * 359.96876 * 9 8 7 32 32 H 1.08006 * 120.09676 * 179.97438 * 10 9 8 33 33 H 0.96999 * 120.00138 * 180.02562 * 15 14 12 34 34 H 1.07995 * 120.09358 * 180.29198 * 20 11 10 35 35 H 1.07996 * 119.91010 * 179.70379 * 21 20 11 36 36 H 1.07994 * 119.99706 * 359.97438 * 23 22 5 37 37 H 1.08002 * 119.99549 * 180.27055 * 24 23 22 38 38 H 1.07997 * 120.00323 * 179.83250 * 25 24 23 39 39 H 1.08004 * 119.99781 * 180.02562 * 26 25 24 40 40 H 1.07999 * 120.00288 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9557 0.7811 -0.8908 7 8 3.9714 2.6452 -0.0011 8 6 4.0545 3.2627 -1.2062 9 6 3.6429 2.5940 -2.3571 10 6 3.7235 3.2075 -3.5729 11 6 4.2300 4.5185 -3.6634 12 6 4.3223 5.1588 -4.9187 13 1 3.6404 4.8918 -5.7125 14 6 5.2971 6.1387 -5.1339 15 7 6.2669 6.2982 -4.2697 16 14 5.2146 7.2199 -6.6551 17 1 3.9377 7.9779 -6.6549 18 1 6.3546 8.1714 -6.6485 19 1 5.2856 6.3701 -7.8708 20 6 4.6380 5.1898 -2.4945 21 6 4.5509 4.5620 -1.2863 22 6 4.1057 0.5915 1.2294 23 6 4.1111 1.2547 2.4423 24 6 4.6019 0.6262 3.5715 25 6 5.0955 -0.6621 3.4861 26 6 5.0949 -1.3234 2.2721 27 6 4.6002 -0.6966 1.1438 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.2597 1.5867 -2.2865 32 1 3.4044 2.6875 -4.4642 33 1 6.9426 6.9779 -4.4188 34 1 5.0231 6.1970 -2.5549 35 1 4.8678 5.0735 -0.3896 36 1 3.7293 2.2628 2.5082 37 1 4.6021 1.1428 4.5199 38 1 5.4814 -1.1521 4.3677 39 1 5.4802 -2.3302 2.2055 40 1 4.5993 -1.2134 0.1955 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225263387.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:29 Heat of formation + Delta-G solvation = -68.972888 kcal Electronic energy + Delta-G solvation = -25006.104219 eV Core-core repulsion = 21330.409384 eV Total energy + Delta-G solvation = -3675.694835 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.76773 -39.18366 -38.57312 -36.67660 -35.97617 -33.43883 -32.30979 -30.96153 -29.79422 -29.03674 -28.41549 -26.60215 -24.83168 -22.65516 -22.29075 -21.66274 -20.78337 -20.08697 -17.83879 -17.57292 -17.31674 -16.85671 -16.56472 -16.03592 -15.36750 -15.14313 -14.79053 -14.29117 -14.07669 -13.97067 -13.46496 -13.38989 -12.98497 -12.83994 -12.75580 -12.45007 -12.24222 -12.16496 -11.83672 -11.67239 -11.24733 -11.15699 -11.06672 -10.86651 -10.83274 -10.73072 -10.48302 -9.98993 -9.83282 -9.37356 -9.10387 -8.96759 -8.85374 -7.67319 -7.03741 -6.69733 -4.29466 1.17519 1.35906 2.30844 2.59214 2.81561 2.93034 3.08504 3.11361 3.20680 3.60750 3.95763 4.03246 4.57495 4.63276 4.84508 4.87050 4.98492 5.07446 5.09971 5.14544 5.20096 5.43751 5.49408 5.54395 5.64216 5.82543 5.94877 5.98802 6.15318 6.35637 6.40239 6.43771 6.47646 6.65991 6.89825 6.93961 7.06966 7.16076 7.38212 7.52559 7.72497 7.85466 7.98802 8.17845 8.33795 8.60955 8.89215 8.94769 10.25269 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.019806 B = 0.003323 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.398399 B = 8423.053989 C = 9223.305099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.440 3.560 4 O -0.477 6.477 5 C 0.146 3.854 6 H 0.113 0.887 7 O -0.285 6.285 8 C -0.009 4.009 9 C -0.165 4.165 10 C -0.192 4.192 11 C 0.091 3.909 12 C -0.463 4.463 13 H 0.076 0.924 14 C 0.073 3.927 15 N -0.805 5.805 16 Si 0.911 3.089 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.267 1.267 20 C -0.127 4.127 21 C -0.113 4.113 22 C -0.083 4.083 23 C -0.086 4.086 24 C -0.124 4.124 25 C -0.114 4.114 26 C -0.124 4.124 27 C -0.092 4.092 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.280 0.720 34 H 0.129 0.871 35 H 0.099 0.901 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.581 -12.974 11.178 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.280 3.720 4 O -0.361 6.361 5 C 0.087 3.913 6 H 0.130 0.870 7 O -0.200 6.200 8 C -0.052 4.052 9 C -0.184 4.184 10 C -0.212 4.212 11 C 0.089 3.911 12 C -0.493 4.493 13 H 0.094 0.906 14 C -0.143 4.143 15 N -0.431 5.431 16 Si 0.736 3.264 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.146 4.146 21 C -0.131 4.131 22 C -0.083 4.083 23 C -0.104 4.104 24 C -0.142 4.142 25 C -0.132 4.132 26 C -0.142 4.142 27 C -0.110 4.110 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.146 0.854 35 H 0.118 0.882 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.559 -12.416 11.381 17.215 hybrid contribution -0.282 0.414 -0.932 1.058 sum -3.841 -12.002 10.449 16.370 Atomic orbital electron populations 1.23235 0.76712 1.03371 1.02583 1.86505 1.23135 1.33495 1.84428 1.24515 0.92515 0.81784 0.73198 1.90712 1.66250 1.36137 1.42987 1.20199 0.86304 0.85947 0.98864 0.86968 1.86013 1.82960 1.21039 1.29986 1.18586 1.09613 0.94678 0.82294 1.20285 1.06132 0.98364 0.93587 1.20574 1.09758 0.95743 0.95104 1.17602 0.89992 0.90118 0.93378 1.19435 1.14327 1.17520 0.98056 0.90611 1.25862 0.94017 0.96451 0.97966 1.69785 1.09390 1.28992 1.34960 0.86328 0.78678 0.79818 0.81618 1.18948 1.20375 1.19127 1.21016 1.03169 1.00281 0.90179 1.19806 1.03231 0.92098 0.98010 1.19271 1.01272 0.94647 0.93133 1.21117 0.97612 0.99987 0.91700 1.21149 0.99411 0.95285 0.98399 1.21200 0.99199 0.95041 0.97761 1.21067 1.00448 1.00066 0.92581 1.20963 0.97107 0.93696 0.99264 0.88236 0.92094 0.91831 0.89472 0.88570 0.90892 0.85360 0.88236 0.85240 0.85822 0.86025 0.85694 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.22 10.48 -39.25 -0.41 -5.63 16 3 C 0.44 7.72 6.44 36.00 0.23 7.95 16 4 O -0.48 -9.94 16.06 -25.49 -0.41 -10.35 16 5 C 0.15 2.51 2.35 -29.04 -0.07 2.45 16 6 H 0.11 1.83 6.11 -51.93 -0.32 1.51 16 7 O -0.29 -5.96 8.69 -38.66 -0.34 -6.30 16 8 C -0.01 -0.21 6.43 -38.78 -0.25 -0.46 16 9 C -0.16 -3.82 8.65 -39.83 -0.34 -4.16 16 10 C -0.19 -4.79 9.74 -39.25 -0.38 -5.17 16 11 C 0.09 2.46 5.55 -106.80 -0.59 1.87 16 12 C -0.46 -12.36 9.05 -37.83 -0.34 -12.70 16 13 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 14 C 0.07 1.85 5.23 -17.34 -0.09 1.76 16 15 N -0.80 -20.87 10.87 55.54 0.60 -20.27 16 16 Si 0.91 18.85 29.58 -169.99 -5.03 13.82 16 17 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 18 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 20 C -0.13 -3.35 8.61 -39.25 -0.34 -3.68 16 21 C -0.11 -2.76 9.92 -39.83 -0.40 -3.16 16 22 C -0.08 -1.21 4.90 -104.62 -0.51 -1.72 16 23 C -0.09 -1.21 9.35 -39.58 -0.37 -1.58 16 24 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 25 C -0.11 -1.14 10.05 -39.58 -0.40 -1.54 16 26 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 27 C -0.09 -1.11 9.67 -39.59 -0.38 -1.49 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.09 1.78 5.66 -52.48 -0.30 1.48 16 32 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 33 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 34 H 0.13 3.44 6.22 -52.49 -0.33 3.12 16 35 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 36 H 0.13 1.91 7.77 -52.49 -0.41 1.50 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.13 1.30 8.04 -52.49 -0.42 0.88 16 LS Contribution 348.27 15.07 5.25 5.25 Total: -1.00 -30.89 348.27 -9.00 -39.89 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -4.70 Total: 7.23 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -3.96 Total: -23.65 kcal Atomic # 7 Polarization: -20.87 SS G_CDS: 0.60 Total: -20.27 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -1.16 Total: -22.27 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.89 -9.00 -39.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225263387.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.085 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds