Wall clock time and date at job start Fri Apr 10 2020 22:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34708 * 117.00029 * 2 1 4 4 O 1.21472 * 119.99942 * 0.02562 * 3 2 1 5 5 C 1.47742 * 120.00051 * 179.97438 * 3 2 1 6 6 C 1.39654 * 120.12311 * 0.27890 * 5 3 2 7 7 C 1.37954 * 119.95559 * 180.27250 * 6 5 3 8 8 C 1.38290 * 120.21632 * 359.45088 * 7 6 5 9 9 C 1.38825 * 120.24884 * 0.27624 * 8 7 6 10 10 O 1.35905 * 119.98156 * 180.02562 * 9 8 7 11 11 C 1.42896 * 117.00345 * 354.62739 * 10 9 8 12 12 H 1.09004 * 109.46832 * 324.13302 * 11 10 9 13 13 C 1.50695 * 109.47315 * 84.13259 * 11 10 9 14 14 H 1.08000 * 120.00156 * 240.00183 * 13 11 10 15 15 C 1.37875 * 120.00172 * 60.00259 * 13 11 10 16 16 N 1.31518 * 119.99733 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 120.00344 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46982 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46872 * 119.99985 * 17 15 13 20 20 H 1.48494 * 109.47037 * 239.99653 * 17 15 13 21 21 C 1.50700 * 109.47503 * 204.13422 * 11 10 9 22 22 C 1.38231 * 119.99771 * 324.72849 * 21 11 10 23 23 C 1.38237 * 119.99872 * 179.78522 * 22 21 11 24 24 C 1.38233 * 119.99990 * 0.44290 * 23 22 21 25 25 C 1.38227 * 120.00126 * 359.80546 * 24 23 22 26 26 C 1.38234 * 120.00043 * 144.99426 * 21 11 10 27 27 C 1.38481 * 120.03207 * 359.97438 * 9 8 7 28 28 H 1.08996 * 109.47585 * 59.99539 * 1 2 3 29 29 H 1.09006 * 109.47096 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46835 * 299.99468 * 1 2 3 31 31 H 1.07998 * 120.02308 * 359.97438 * 6 5 3 32 32 H 1.08003 * 119.88762 * 179.72255 * 7 6 5 33 33 H 1.07996 * 119.87559 * 180.29571 * 8 7 6 34 34 H 0.97005 * 119.99856 * 180.02562 * 16 15 13 35 35 H 1.08000 * 120.00164 * 359.97438 * 22 21 11 36 36 H 1.08002 * 120.00017 * 180.27183 * 23 22 21 37 37 H 1.08005 * 120.00074 * 179.83545 * 24 23 22 38 38 H 1.07998 * 120.00180 * 180.02562 * 25 24 23 39 39 H 1.07995 * 120.00368 * 359.97438 * 26 21 11 40 40 H 1.08001 * 120.10109 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.3021 0.1080 -0.0048 7 6 5.6795 0.1842 0.0015 8 6 6.3084 1.4158 0.0016 9 6 5.5584 2.5840 0.0011 10 8 6.1821 3.7915 0.0007 11 6 7.6061 3.7863 0.1199 12 1 7.9120 2.9790 0.7854 13 6 8.2232 3.5781 -1.2391 14 1 8.8581 2.7231 -1.4186 15 6 7.9772 4.4791 -2.2533 16 7 7.2036 5.5200 -2.0348 17 14 8.7427 4.2215 -3.9376 18 1 9.5648 2.9849 -3.9238 19 1 7.6686 4.0900 -4.9546 20 1 9.6027 5.3845 -4.2736 21 6 8.0678 5.1050 0.6846 22 6 7.4069 6.2710 0.3464 23 6 7.8277 7.4801 0.8678 24 6 8.9151 7.5243 1.7202 25 6 9.5791 6.3589 2.0544 26 6 9.1556 5.1492 1.5364 27 6 4.1751 2.5196 0.0001 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.8142 -0.8555 -0.0089 32 1 6.2686 -0.7210 0.0019 33 1 7.3870 1.4691 0.0016 34 1 7.0302 6.1538 -2.7485 35 1 6.5600 6.2371 -0.3229 36 1 7.3087 8.3906 0.6071 37 1 9.2455 8.4693 2.1256 38 1 10.4284 6.3934 2.7207 39 1 9.6744 4.2387 1.7976 40 1 3.5905 3.4277 0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225678630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:31 Heat of formation + Delta-G solvation = -61.054827 kcal Electronic energy + Delta-G solvation = -25079.389595 eV Core-core repulsion = 21404.038112 eV Total energy + Delta-G solvation = -3675.351483 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.36004 -39.23906 -38.09553 -36.53396 -36.13073 -33.18082 -30.99304 -30.81506 -29.82493 -29.25856 -27.60869 -27.08709 -23.97878 -23.16753 -21.91553 -21.39128 -20.86291 -19.91979 -18.18819 -17.08862 -16.64150 -16.24799 -16.13717 -15.73245 -15.33999 -14.93966 -14.79889 -13.94642 -13.82412 -13.80289 -13.44979 -13.31048 -13.24741 -12.69134 -12.47648 -12.23759 -12.17499 -11.86530 -11.63041 -11.34764 -11.31376 -11.08167 -10.77903 -10.75842 -10.56893 -10.50354 -10.28630 -10.13826 -9.46080 -9.32923 -8.91392 -8.63504 -7.90129 -7.61404 -7.37661 -6.15088 -4.51634 1.08111 1.96478 2.35325 2.52188 2.75959 2.87061 3.15480 3.24506 3.26198 4.18776 4.29363 4.34472 4.89737 4.92470 5.05193 5.05658 5.12835 5.29116 5.43526 5.52594 5.69667 5.73680 5.82900 5.89958 5.92931 6.02927 6.19627 6.31728 6.37225 6.40568 6.57750 6.66485 6.75169 6.83252 6.93090 7.00797 7.14633 7.25566 7.40531 7.49327 7.66535 7.80554 7.89537 7.92022 8.17106 8.38392 8.74081 9.26021 10.68359 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.004058 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.048830 B = 6897.477107 C = 7673.892595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.512 3.488 4 O -0.508 6.508 5 C -0.099 4.099 6 C -0.128 4.128 7 C -0.099 4.099 8 C -0.168 4.168 9 C 0.166 3.834 10 O -0.291 6.291 11 C 0.239 3.761 12 H 0.036 0.964 13 C -0.547 4.547 14 H 0.069 0.931 15 C 0.085 3.915 16 N -0.844 5.844 17 Si 0.896 3.104 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.045 4.045 22 C -0.046 4.046 23 C -0.151 4.151 24 C -0.142 4.142 25 C -0.148 4.148 26 C -0.125 4.125 27 C -0.109 4.109 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.140 0.860 34 H 0.266 0.734 35 H 0.165 0.835 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.950 -7.352 4.789 10.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.358 3.642 4 O -0.397 6.397 5 C -0.100 4.100 6 C -0.146 4.146 7 C -0.117 4.117 8 C -0.187 4.187 9 C 0.117 3.883 10 O -0.203 6.203 11 C 0.185 3.815 12 H 0.053 0.947 13 C -0.583 4.583 14 H 0.087 0.913 15 C -0.122 4.122 16 N -0.478 5.478 17 Si 0.723 3.277 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.046 4.046 22 C -0.065 4.065 23 C -0.170 4.170 24 C -0.160 4.160 25 C -0.167 4.167 26 C -0.143 4.143 27 C -0.128 4.128 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.158 0.842 34 H 0.077 0.923 35 H 0.182 0.818 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.323 -6.687 4.675 9.742 hybrid contribution 0.588 -0.016 -1.140 1.283 sum -4.735 -6.703 3.535 8.935 Atomic orbital electron populations 1.23231 0.76551 1.03409 1.02541 1.86554 1.23089 1.33013 1.84625 1.21353 0.89346 0.81118 0.72374 1.90819 1.66885 1.36035 1.45943 1.18613 0.87987 0.94492 1.08896 1.21056 0.93859 0.97056 1.02648 1.20864 0.93956 0.97354 0.99506 1.21742 1.01581 0.91976 1.03408 1.18835 0.91111 0.86656 0.91726 1.86302 1.25157 1.24260 1.84540 1.19027 0.75865 0.91116 0.95480 0.94660 1.21409 1.31872 1.10532 0.94533 0.91290 1.25028 0.93912 0.94026 0.99280 1.69814 1.34335 1.11643 1.31992 0.86463 0.79221 0.78525 0.83484 1.19458 1.20561 1.20619 1.19749 0.95132 0.96071 0.93617 1.21886 1.01113 0.90143 0.93348 1.21163 0.98147 0.98287 0.99380 1.20863 0.97593 0.97106 1.00480 1.20713 1.00611 0.92974 1.02375 1.20744 0.97762 0.97166 0.98633 1.20415 0.92378 0.96972 1.03005 0.91957 0.88227 0.91968 0.85480 0.85842 0.84184 0.92310 0.81835 0.87814 0.88074 0.87767 0.87588 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.87 9.81 -40.51 -0.40 -5.26 16 3 C 0.51 8.53 7.90 34.61 0.27 8.80 16 4 O -0.51 -9.59 16.14 -19.24 -0.31 -9.90 16 5 C -0.10 -1.71 5.87 -105.00 -0.62 -2.32 16 6 C -0.13 -1.93 9.61 -39.16 -0.38 -2.31 16 7 C -0.10 -1.51 10.02 -39.67 -0.40 -1.91 16 8 C -0.17 -3.09 8.69 -39.35 -0.34 -3.43 16 9 C 0.17 3.44 6.58 -39.27 -0.26 3.18 16 10 O -0.29 -6.83 8.35 -19.44 -0.16 -6.99 16 11 C 0.24 5.49 2.11 -29.04 -0.06 5.43 16 12 H 0.04 0.76 6.27 -51.93 -0.33 0.43 16 13 C -0.55 -13.52 7.91 -34.44 -0.27 -13.79 16 14 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 15 C 0.08 2.14 5.24 -17.82 -0.09 2.05 16 16 N -0.84 -21.65 8.50 55.43 0.47 -21.17 16 17 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 C -0.05 -1.03 4.80 -104.63 -0.50 -1.53 16 22 C -0.05 -1.06 7.46 -39.58 -0.30 -1.35 16 23 C -0.15 -3.07 10.05 -39.58 -0.40 -3.47 16 24 C -0.14 -2.65 10.05 -39.59 -0.40 -3.04 16 25 C -0.15 -2.76 10.05 -39.58 -0.40 -3.16 16 26 C -0.12 -2.54 9.68 -39.58 -0.38 -2.92 16 27 C -0.11 -2.13 9.53 -39.01 -0.37 -2.50 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.13 1.60 7.61 -52.49 -0.40 1.20 16 32 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.14 2.58 5.65 -52.49 -0.30 2.28 16 34 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 35 H 0.16 4.08 5.50 -52.49 -0.29 3.79 16 36 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 37 H 0.10 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.11 1.94 8.06 -52.49 -0.42 1.51 16 40 H 0.14 2.75 7.65 -52.49 -0.40 2.35 16 LS Contribution 343.28 15.07 5.17 5.17 Total: -1.00 -28.08 343.28 -8.71 -36.79 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -4.64 Total: 7.22 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -3.82 Total: -20.84 kcal Atomic # 7 Polarization: -21.65 SS G_CDS: 0.47 Total: -21.17 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.87 Total: -22.16 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.08 -8.71 -36.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225678630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.265 kcal (2) G-P(sol) polarization free energy of solvation -28.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds