Wall clock time and date at job start Fri Apr 10 2020 22:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00006 * 2 1 4 4 H 1.48507 * 109.46803 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47490 * 120.00147 * 3 2 1 6 6 H 1.48502 * 109.47181 * 240.00675 * 3 2 1 7 7 C 1.38813 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99903 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99736 * 359.97438 * 7 2 1 10 10 C 1.47017 * 125.64984 * 359.69440 * 9 7 2 11 11 C 1.54337 * 107.26721 * 178.84884 * 10 9 7 12 12 C 1.55160 * 103.01861 * 338.13778 * 11 10 9 13 13 H 1.08993 * 111.00580 * 277.23168 * 12 11 10 14 14 O 1.42899 * 111.03703 * 153.39321 * 12 11 10 15 15 C 1.35142 * 117.00361 * 162.60231 * 14 12 11 16 16 C 1.39215 * 119.94234 * 5.33354 * 15 14 12 17 17 C 1.35991 * 121.90220 * 179.97438 * 16 15 14 18 18 C 1.41095 * 121.19063 * 359.97438 * 17 16 15 19 19 C 1.40337 * 121.03612 * 180.02562 * 18 17 16 20 20 C 1.36441 * 119.81261 * 179.97438 * 19 18 17 21 21 C 1.38959 * 120.89820 * 0.02562 * 20 19 18 22 22 C 1.37795 * 120.63156 * 359.97438 * 21 20 19 23 23 C 1.39349 * 119.56429 * 0.02562 * 22 21 20 24 24 C 1.41804 * 119.95238 * 185.05519 * 15 14 12 25 25 N 1.32390 * 120.86080 * 0.02562 * 24 15 14 26 26 O 1.21799 * 120.00116 * 0.02562 * 25 24 15 27 27 C 1.47426 * 125.64465 * 180.02562 * 9 7 2 28 28 H 0.97003 * 120.00159 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.88202 * 298.39287 * 10 9 7 30 30 H 1.08993 * 109.88261 * 59.55995 * 10 9 7 31 31 H 1.08999 * 110.85142 * 219.67322 * 11 10 9 32 32 H 1.08998 * 110.66881 * 96.52016 * 11 10 9 33 33 H 1.07992 * 119.05080 * 359.97060 * 16 15 14 34 34 H 1.08002 * 119.40515 * 179.97438 * 17 16 15 35 35 H 1.08007 * 120.09142 * 0.02562 * 19 18 17 36 36 H 1.07994 * 119.55186 * 179.97438 * 20 19 18 37 37 H 1.08003 * 119.68071 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.21753 * 179.97438 * 22 21 20 39 39 H 1.09001 * 110.36639 * 322.92801 * 27 9 7 40 40 H 1.08997 * 110.36892 * 85.14387 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1040 1.6965 1.2124 6 1 3.1038 1.6965 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1374 -2.5327 0.0064 11 6 -0.4484 -4.0441 -0.0261 12 6 0.8515 -4.6559 -0.6122 13 1 0.8554 -4.5958 -1.7005 14 8 1.0253 -6.0055 -0.1759 15 6 1.8935 -6.7695 -0.8752 16 6 2.6522 -6.2025 -1.8955 17 6 3.5377 -6.9337 -2.6239 18 6 3.7282 -8.3095 -2.3755 19 6 4.6433 -9.0609 -3.1289 20 6 4.8080 -10.3897 -2.8670 21 6 4.0802 -11.0145 -1.8615 22 6 3.1744 -10.3033 -1.1049 23 6 2.9880 -8.9448 -1.3530 24 6 2.0344 -8.1459 -0.5648 25 7 1.3240 -8.6994 0.4057 26 8 0.5366 -8.0249 1.0448 27 6 1.9336 -3.7311 -0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5497 -2.0868 0.9114 30 1 -0.5618 -2.0499 -0.8738 31 1 -1.2990 -4.2514 -0.6753 32 1 -0.6322 -4.4207 0.9801 33 1 2.5342 -5.1517 -2.1148 34 1 4.1054 -6.4527 -3.4067 35 1 5.2160 -8.5883 -3.9132 36 1 5.5130 -10.9640 -3.4496 37 1 4.2260 -12.0676 -1.6713 38 1 2.6121 -10.7957 -0.3254 39 1 2.8328 -3.7404 -0.6165 40 1 2.1689 -4.0410 1.0176 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227469100.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:49 Heat of formation + Delta-G solvation = 53.751395 kcal Electronic energy + Delta-G solvation = -25090.045807 eV Core-core repulsion = 21451.965447 eV Total energy + Delta-G solvation = -3638.080360 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.12116 -39.51560 -38.95958 -36.79746 -35.57111 -33.15744 -32.38233 -30.44372 -29.96415 -29.26272 -27.64239 -26.31391 -24.69929 -23.58643 -23.01230 -21.45171 -20.63416 -20.18696 -18.54097 -18.03304 -17.54021 -16.88708 -16.33251 -15.78043 -15.56452 -14.95344 -14.79960 -14.63311 -14.44728 -14.14952 -13.88846 -13.42995 -13.41344 -13.16724 -13.14278 -12.64620 -12.34600 -12.17400 -11.82836 -11.50333 -11.35892 -11.23778 -11.05868 -10.87722 -10.44346 -10.40555 -10.19808 -10.07482 -9.92254 -9.79137 -8.88176 -8.73906 -8.71244 -8.10698 -7.00090 -5.83194 -3.18759 -0.49574 0.75067 1.06927 2.18926 2.83594 2.86822 3.34158 3.38993 3.40158 3.77853 4.13403 4.29018 4.35211 4.40444 4.47040 4.61887 4.76879 4.84377 4.94885 4.98912 5.12045 5.31825 5.37548 5.43953 5.48035 5.49150 5.53375 5.70996 5.75900 5.86163 6.05492 6.11730 6.13946 6.18969 6.27948 6.30614 6.44927 6.47947 6.56077 7.20597 7.41369 7.46980 7.69565 8.10973 8.52452 9.07938 9.67189 10.30461 11.28219 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.022368 B = 0.003228 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.464910 B = 8672.067380 C = 9619.712023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.003 4.003 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.236 4.236 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.177 3.823 11 C -0.131 4.131 12 C 0.047 3.953 13 H 0.086 0.914 14 O -0.243 6.243 15 C 0.251 3.749 16 C -0.230 4.230 17 C 0.011 3.989 18 C -0.111 4.111 19 C -0.077 4.077 20 C -0.139 4.139 21 C -0.087 4.087 22 C -0.119 4.119 23 C 0.048 3.952 24 C -0.152 4.152 25 N -0.328 5.328 26 O 0.087 5.913 27 C 0.119 3.881 28 H 0.256 0.744 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.152 0.848 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.043 0.957 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.520 -18.137 -7.103 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.200 4.200 3 Si 0.745 3.255 4 H -0.214 1.214 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.364 4.364 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.053 3.947 11 C -0.169 4.169 12 C -0.009 4.009 13 H 0.104 0.896 14 O -0.148 6.148 15 C 0.194 3.806 16 C -0.249 4.249 17 C -0.008 4.008 18 C -0.112 4.112 19 C -0.095 4.095 20 C -0.157 4.157 21 C -0.106 4.106 22 C -0.137 4.137 23 C 0.046 3.954 24 C -0.266 4.266 25 N 0.158 4.842 26 O -0.279 6.279 27 C -0.008 4.008 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.170 0.830 34 H 0.161 0.839 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.061 0.939 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.291 -19.364 -7.509 22.011 hybrid contribution 0.550 1.933 -0.428 2.055 sum 7.841 -17.431 -7.937 20.696 Atomic orbital electron populations 1.69922 1.04914 1.25528 1.56259 1.24823 0.95765 0.97772 1.01664 0.86159 0.78475 0.82884 0.77969 1.21440 1.21004 1.21107 1.18989 0.90453 0.82046 1.44913 0.90347 1.44319 1.01713 0.99311 1.87452 1.21261 0.84247 0.87176 1.02023 1.23062 0.93762 0.98415 1.01670 1.24344 1.00485 0.76785 0.99252 0.89573 1.86293 1.53529 1.24483 1.50503 1.21095 0.83251 0.90692 0.85576 1.21362 1.01168 1.02940 0.99443 1.21409 0.92350 0.92097 0.94954 1.18017 1.00306 0.94090 0.98754 1.21076 0.96114 0.94233 0.98034 1.20846 1.00881 0.95017 0.98951 1.21336 0.94646 1.00109 0.94468 1.21104 0.99265 0.92662 1.00660 1.18440 0.91893 0.93012 0.92022 1.21535 1.09411 0.89036 1.06590 1.73136 0.90379 1.28541 0.92129 1.93760 1.24043 1.69830 1.40287 1.21991 0.93671 0.86806 0.98292 0.93413 0.92853 0.92879 0.90944 0.90040 0.83006 0.83910 0.84954 0.85476 0.85333 0.84746 0.93910 0.94735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.96 10.31 55.49 0.57 -25.39 16 2 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 3 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.24 -6.33 10.28 -15.06 -0.15 -6.49 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.66 3.39 -170.05 -0.58 -15.24 16 10 C 0.18 4.08 5.37 -3.06 -0.02 4.06 16 11 C -0.13 -2.35 6.69 -24.89 -0.17 -2.52 16 12 C 0.05 0.81 2.82 -24.57 -0.07 0.74 16 13 H 0.09 1.37 6.60 -51.93 -0.34 1.02 16 14 O -0.24 -4.13 7.81 -40.21 -0.31 -4.44 16 15 C 0.25 3.97 6.68 -37.86 -0.25 3.72 16 16 C -0.23 -3.04 8.56 -40.03 -0.34 -3.38 16 17 C 0.01 0.12 9.69 -39.31 -0.38 -0.26 16 18 C -0.11 -1.30 5.74 -106.85 -0.61 -1.91 16 19 C -0.08 -0.68 9.76 -39.44 -0.38 -1.07 16 20 C -0.14 -1.15 9.95 -39.96 -0.40 -1.55 16 21 C -0.09 -0.81 10.02 -39.48 -0.40 -1.20 16 22 C -0.12 -1.44 9.63 -39.33 -0.38 -1.82 16 23 C 0.05 0.67 5.90 -104.64 -0.62 0.05 16 24 C -0.15 -2.48 6.87 -82.59 -0.57 -3.05 16 25 N -0.33 -5.65 10.93 33.47 0.37 -5.28 16 26 O 0.09 1.52 17.12 -27.32 -0.47 1.05 16 27 C 0.12 2.38 6.58 -2.51 -0.02 2.36 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.05 1.36 7.52 -51.93 -0.39 0.97 16 30 H 0.05 1.33 7.37 -51.93 -0.38 0.94 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.15 1.93 5.16 -52.49 -0.27 1.66 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 37 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.13 1.64 7.69 -52.49 -0.40 1.23 16 39 H 0.04 0.80 7.19 -51.93 -0.37 0.43 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 334.80 15.07 5.05 5.05 Total: -1.00 -30.91 334.80 -9.92 -40.83 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -4.67 Total: -0.42 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -4.85 Total: -12.50 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.36 Total: -45.90 kcal Atomic # 8 Polarization: -2.61 SS G_CDS: -0.78 Total: -3.39 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.91 -9.92 -40.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227469100.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.580 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds