Wall clock time and date at job start Fri Apr 10 2020 22:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00403 * 2 1 4 4 H 1.48504 * 109.47033 * 270.00788 * 3 2 1 5 5 H 1.48505 * 109.46879 * 30.00197 * 3 2 1 6 6 H 1.48497 * 109.47243 * 150.00097 * 3 2 1 7 7 C 1.37876 * 119.99440 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99749 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00275 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47228 * 180.02562 * 9 7 2 11 11 C 1.47960 * 111.00342 * 190.00246 * 10 9 7 12 12 C 1.53935 * 86.18211 * 222.41906 * 11 10 9 13 13 O 1.42897 * 113.73535 * 138.07816 * 12 11 10 14 14 C 1.35143 * 117.00014 * 156.92692 * 13 12 11 15 15 C 1.39207 * 119.94912 * 5.83873 * 14 13 12 16 16 C 1.35987 * 121.90615 * 180.24501 * 15 14 13 17 17 C 1.41095 * 121.18727 * 359.47493 * 16 15 14 18 18 C 1.40334 * 121.02813 * 180.25208 * 17 16 15 19 19 C 1.36445 * 119.80759 * 180.02562 * 18 17 16 20 20 C 1.38949 * 120.90326 * 0.02562 * 19 18 17 21 21 C 1.37804 * 120.63207 * 359.97254 * 20 19 18 22 22 C 1.39351 * 119.56025 * 0.02718 * 21 20 19 23 23 C 1.41812 * 119.94826 * 185.59144 * 14 13 12 24 24 N 1.32391 * 120.85996 * 0.04339 * 23 14 13 25 25 O 1.21802 * 120.00144 * 359.97438 * 24 23 14 26 26 C 1.48192 * 111.07123 * 90.56867 * 10 9 7 27 27 H 0.97002 * 119.99579 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46999 * 60.00897 * 9 7 2 29 29 H 1.08992 * 109.47653 * 300.00098 * 9 7 2 30 30 H 1.09000 * 113.75770 * 108.09820 * 11 10 9 31 31 H 1.09002 * 113.75637 * 336.73874 * 11 10 9 32 32 H 1.09006 * 113.72963 * 269.25322 * 12 11 10 33 33 H 1.08005 * 119.04824 * 0.02562 * 15 14 13 34 34 H 1.07994 * 119.40538 * 179.76356 * 16 15 14 35 35 H 1.07996 * 120.09936 * 0.02562 * 18 17 16 36 36 H 1.08007 * 119.55069 * 180.02562 * 19 18 17 37 37 H 1.07993 * 119.68900 * 179.97438 * 20 19 18 38 38 H 1.07996 * 120.22359 * 180.02562 * 21 20 19 39 39 H 1.08997 * 113.75451 * 23.23714 * 26 10 9 40 40 H 1.08999 * 113.81994 * 251.81180 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4991 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 1.5160 -4.9028 -0.2405 12 6 2.4190 -5.4751 0.8671 13 8 1.7390 -6.3513 1.7681 14 6 2.4953 -7.2460 2.4419 15 6 3.8826 -7.2038 2.3347 16 6 4.6814 -8.0872 2.9909 17 6 4.1356 -9.0863 3.8244 18 6 4.9633 -9.9929 4.5042 19 6 4.4088 -10.9497 5.3035 20 6 3.0307 -11.0416 5.4556 21 6 2.1921 -10.1657 4.8011 22 6 2.7340 -9.1796 3.9790 23 6 1.8747 -8.2230 3.2612 24 7 0.5569 -8.2742 3.3773 25 8 -0.1390 -7.4753 2.7764 26 6 2.5411 -4.0297 1.3822 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6245 -2.5571 0.8896 30 1 1.7077 -5.3266 -1.2262 31 1 0.4575 -4.8890 0.0193 32 1 3.3569 -5.8900 0.4977 33 1 4.3376 -6.4497 1.7094 34 1 5.7531 -8.0199 2.8757 35 1 6.0361 -9.9336 4.3951 36 1 5.0498 -11.6451 5.8251 37 1 2.6128 -11.8068 6.0929 38 1 1.1220 -10.2428 4.9244 39 1 1.7831 -3.7600 2.1176 40 1 3.5505 -3.7572 1.6905 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227469313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:53 Heat of formation + Delta-G solvation = 65.659525 kcal Electronic energy + Delta-G solvation = -24564.805456 eV Core-core repulsion = 20927.241472 eV Total energy + Delta-G solvation = -3637.563985 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.27344 -39.93232 -39.18178 -37.83018 -35.70366 -33.24417 -32.87361 -30.53181 -30.10061 -29.18816 -26.51896 -25.87884 -25.35562 -23.73538 -23.24970 -21.85502 -21.17997 -19.67693 -18.77034 -18.10094 -17.50154 -16.56893 -16.29114 -15.87737 -15.83102 -15.27283 -15.03185 -14.68398 -14.49797 -14.39785 -14.20071 -13.57529 -13.49655 -13.23927 -13.21233 -13.06532 -12.31793 -12.28426 -12.08741 -11.61946 -11.55624 -11.41381 -11.28890 -10.99911 -10.62510 -10.42160 -10.34791 -10.02212 -9.81419 -9.29643 -8.97152 -8.85128 -8.47898 -8.20606 -8.00767 -6.06316 -4.08521 -0.60613 0.64071 0.98105 2.06989 2.70734 2.76815 3.30301 3.36336 3.39644 3.67586 4.00959 4.17635 4.20666 4.33079 4.38121 4.48999 4.55413 4.57242 4.66801 4.75060 4.82220 4.92826 5.22105 5.28941 5.34991 5.36426 5.50594 5.60600 5.69101 5.73887 5.89402 5.96625 6.02637 6.05574 6.09129 6.17125 6.23449 6.41759 6.45179 7.04050 7.12734 7.57668 7.75304 8.01675 8.36188 8.42924 8.98011 9.55705 11.04564 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.026057 B = 0.002706 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.305912 B =10345.913072 C =10875.732133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.509 4.509 8 H 0.063 0.937 9 C 0.162 3.838 10 N -0.469 5.469 11 C 0.014 3.986 12 C 0.023 3.977 13 O -0.244 6.244 14 C 0.247 3.753 15 C -0.233 4.233 16 C 0.012 3.988 17 C -0.112 4.112 18 C -0.077 4.077 19 C -0.138 4.138 20 C -0.086 4.086 21 C -0.118 4.118 22 C 0.048 3.952 23 C -0.149 4.149 24 N -0.330 5.330 25 O 0.094 5.906 26 C 0.004 3.996 27 H 0.263 0.737 28 H 0.034 0.966 29 H 0.009 0.991 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.082 0.918 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.105 -21.820 8.384 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.036 3.964 10 N -0.195 5.195 11 C -0.115 4.115 12 C -0.032 4.032 13 O -0.149 6.149 14 C 0.190 3.810 15 C -0.252 4.252 16 C -0.007 4.007 17 C -0.113 4.113 18 C -0.095 4.095 19 C -0.156 4.156 20 C -0.104 4.104 21 C -0.137 4.137 22 C 0.047 3.953 23 C -0.262 4.262 24 N 0.158 4.842 25 O -0.274 6.274 26 C -0.125 4.125 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.027 0.973 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.168 0.832 34 H 0.161 0.839 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.101 0.899 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.735 -22.808 9.026 26.775 hybrid contribution 0.395 1.499 -0.045 1.550 sum 11.130 -21.309 8.981 25.664 Atomic orbital electron populations 1.69953 1.06034 1.26946 1.50612 1.25000 0.94901 0.99384 0.95342 0.86475 0.79660 0.82994 0.78137 1.20592 1.21236 1.19905 1.21055 0.93508 0.89703 1.50510 0.91919 1.20279 0.90466 0.88402 0.97229 1.68719 1.33712 1.01834 1.15185 1.24182 0.98446 0.92087 0.96774 1.25494 0.97888 0.88781 0.91059 1.86417 1.36026 1.41904 1.50564 1.21098 0.90608 0.84646 0.84684 1.21229 0.92612 1.04512 1.06815 1.21394 1.00525 0.89617 0.89115 1.18011 0.92497 0.99039 1.01710 1.21073 0.99480 0.93713 0.95217 1.20865 0.95202 0.99447 1.00062 1.21356 0.93505 0.97895 0.97639 1.21128 1.00876 0.94736 0.96929 1.18453 0.91024 0.92545 0.93323 1.21587 0.94147 1.01526 1.08980 1.73165 1.01155 1.08887 1.01001 1.93781 1.58872 1.36409 1.38360 1.24435 1.03101 0.90273 0.94651 0.92779 0.94820 0.97337 0.88969 0.89639 0.87415 0.83210 0.83891 0.84925 0.85400 0.85244 0.84672 0.89946 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -14.14 9.36 -34.44 -0.32 -14.46 16 8 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 9 C 0.16 4.09 4.56 -4.97 -0.02 4.07 16 10 N -0.47 -9.56 6.14 -239.75 -1.47 -11.03 16 11 C 0.01 0.23 7.78 -2.76 -0.02 0.21 16 12 C 0.02 0.34 3.83 -25.80 -0.10 0.24 16 13 O -0.24 -3.78 8.01 -40.21 -0.32 -4.10 16 14 C 0.25 3.52 6.73 -37.86 -0.25 3.26 16 15 C -0.23 -2.55 8.87 -40.03 -0.36 -2.91 16 16 C 0.01 0.11 9.69 -39.31 -0.38 -0.27 16 17 C -0.11 -1.17 5.74 -106.85 -0.61 -1.78 16 18 C -0.08 -0.60 9.76 -39.44 -0.38 -0.99 16 19 C -0.14 -1.02 9.95 -39.96 -0.40 -1.42 16 20 C -0.09 -0.73 10.02 -39.48 -0.40 -1.13 16 21 C -0.12 -1.36 9.64 -39.33 -0.38 -1.73 16 22 C 0.05 0.63 5.90 -104.64 -0.62 0.01 16 23 C -0.15 -2.29 6.87 -82.59 -0.57 -2.86 16 24 N -0.33 -5.50 10.93 33.47 0.37 -5.13 16 25 O 0.09 1.61 17.12 -27.32 -0.47 1.15 16 26 C 0.00 0.08 7.81 -2.63 -0.02 0.06 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.03 0.91 8.08 -51.93 -0.42 0.49 16 29 H 0.01 0.23 7.39 -51.93 -0.38 -0.15 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.09 1.48 7.92 -51.93 -0.41 1.07 16 32 H 0.11 1.29 5.93 -51.93 -0.31 0.98 16 33 H 0.15 1.39 5.82 -52.48 -0.31 1.08 16 34 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 35 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 36 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.14 1.57 7.69 -52.49 -0.40 1.17 16 39 H 0.08 1.56 7.48 -51.93 -0.39 1.18 16 40 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -32.28 343.26 -10.64 -42.92 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.70 Total: -1.52 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -4.93 Total: -18.23 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: -0.37 Total: -41.81 kcal Atomic # 8 Polarization: -2.16 SS G_CDS: -0.79 Total: -2.95 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.28 -10.64 -42.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227469313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.577 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds