Wall clock time and date at job start Fri Apr 10 2020 22:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99536 * 2 1 4 4 H 1.48496 * 109.47403 * 269.99808 * 3 2 1 5 5 H 1.48505 * 109.47446 * 29.99660 * 3 2 1 6 6 H 1.48504 * 109.47464 * 149.99595 * 3 2 1 7 7 C 1.37873 * 120.00820 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99540 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00382 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.47069 * 180.02562 * 9 7 2 11 11 C 1.46895 * 111.00128 * 66.04744 * 10 9 7 12 12 C 1.50694 * 109.47383 * 199.65012 * 11 10 9 13 13 C 1.34520 * 125.78648 * 84.84373 * 12 11 10 14 14 C 1.41382 * 106.83687 * 180.02562 * 13 12 11 15 15 C 1.34513 * 106.84508 * 359.97438 * 14 13 12 16 16 O 1.34302 * 125.79082 * 264.54108 * 12 11 10 17 17 C 1.46901 * 110.99997 * 190.00320 * 10 9 7 18 18 C 1.50706 * 109.47140 * 75.63793 * 17 10 9 19 19 C 1.34033 * 124.90800 * 84.84656 * 18 17 10 20 20 C 1.46636 * 106.17729 * 180.02562 * 19 18 17 21 21 C 1.39140 * 135.25876 * 180.02562 * 20 19 18 22 22 N 1.31766 * 120.09109 * 179.97438 * 21 20 19 23 23 C 1.32251 * 122.11267 * 359.97438 * 22 21 20 24 24 C 1.37801 * 121.52028 * 359.97438 * 23 22 21 25 25 C 1.39156 * 118.91642 * 0.02562 * 24 23 22 26 26 O 1.34371 * 134.63316 * 179.68190 * 25 24 23 27 27 H 0.97002 * 120.00763 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46974 * 60.00588 * 9 7 2 29 29 H 1.09001 * 109.47161 * 300.00464 * 9 7 2 30 30 H 1.08998 * 109.47402 * 319.65772 * 11 10 9 31 31 H 1.09002 * 109.46950 * 79.65091 * 11 10 9 32 32 H 1.07997 * 126.57992 * 359.96612 * 13 12 11 33 33 H 1.08005 * 126.57666 * 179.97438 * 14 13 12 34 34 H 1.07999 * 125.79157 * 179.97438 * 15 14 13 35 35 H 1.09003 * 109.47115 * 315.64361 * 17 10 9 36 36 H 1.08998 * 109.47427 * 195.64169 * 17 10 9 37 37 H 1.08005 * 126.91513 * 0.02562 * 19 18 17 38 38 H 1.08002 * 119.95446 * 0.02562 * 21 20 19 39 39 H 1.08006 * 119.23382 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.54066 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4463 2.6528 0.7000 6 1 3.5465 1.4405 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1938 0.0000 10 7 4.0014 -2.5788 0.0001 11 6 3.6515 -3.2610 -1.2529 12 6 3.7205 -4.7525 -1.0490 13 6 2.7372 -5.5249 -0.5530 14 6 3.2274 -6.8509 -0.5354 15 6 4.4807 -6.8096 -1.0223 16 8 4.7719 -5.5368 -1.3371 17 6 5.4503 -2.6248 0.2377 18 6 5.7285 -2.3682 1.6965 19 6 5.7061 -3.3023 2.6575 20 6 6.0320 -2.6097 3.9082 21 6 6.1719 -2.9879 5.2399 22 7 6.4832 -2.0898 6.1525 23 6 6.6730 -0.8165 5.8498 24 6 6.5550 -0.3583 4.5555 25 6 6.2279 -1.2619 3.5491 26 8 6.0314 -1.1678 2.2231 27 1 -0.4851 0.8400 -0.0004 28 1 3.8752 -0.6794 0.8895 29 1 3.8746 -0.6805 -0.8905 30 1 2.6406 -2.9811 -1.5491 31 1 4.3531 -2.9683 -2.0341 32 1 1.7611 -5.1952 -0.2292 33 1 2.6973 -7.7286 -0.1962 34 1 5.1395 -7.6568 -1.1432 35 1 5.9419 -1.8615 -0.3655 36 1 5.8327 -3.6076 -0.0377 37 1 5.4911 -4.3537 2.5353 38 1 6.0260 -4.0191 5.5258 39 1 6.9263 -0.1197 6.6352 40 1 6.7138 0.6850 4.3261 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593564049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:35 Heat of formation + Delta-G solvation = 71.127860 kcal Electronic energy + Delta-G solvation = -25229.534173 eV Core-core repulsion = 21592.207313 eV Total energy + Delta-G solvation = -3637.326860 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.52157 -42.24051 -38.92967 -37.17565 -33.06229 -32.72900 -32.53610 -31.63630 -30.85085 -29.91587 -27.84317 -26.29301 -24.17220 -23.53875 -22.29579 -21.45771 -21.39894 -20.58818 -19.85843 -17.78760 -17.22024 -17.12023 -16.59596 -16.16948 -15.94777 -15.74393 -14.83647 -14.73178 -14.49823 -14.38344 -13.97742 -13.77108 -13.30149 -13.13600 -12.76252 -12.59834 -12.50952 -12.37984 -12.18903 -12.11283 -11.62896 -11.46529 -11.23140 -10.81846 -10.54020 -10.15289 -9.93523 -9.69085 -9.61836 -9.44534 -9.26460 -8.68332 -8.24539 -8.08585 -7.77115 -6.15436 -4.14536 0.78758 1.34479 1.98430 2.41003 2.70496 2.95272 3.21212 3.26369 3.30439 3.33348 3.81344 4.33357 4.33636 4.45750 4.62178 4.72316 4.98033 5.02960 5.13198 5.17040 5.21590 5.28576 5.33886 5.41645 5.48877 5.64896 5.73218 5.74863 5.90903 6.06348 6.08844 6.15403 6.32047 6.41254 6.45141 6.49870 6.63126 6.69296 6.82884 7.18743 7.35335 7.47581 7.58910 7.72367 7.94293 8.48126 8.91056 9.45202 10.96964 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.008023 B = 0.006096 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3489.043224 B = 4591.697597 C = 7282.393848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.869 3.131 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.084 0.916 9 C 0.161 3.839 10 N -0.517 5.517 11 C 0.139 3.861 12 C 0.002 3.998 13 C -0.190 4.190 14 C -0.212 4.212 15 C -0.058 4.058 16 O -0.185 6.185 17 C 0.120 3.880 18 C 0.065 3.935 19 C -0.179 4.179 20 C -0.179 4.179 21 C 0.156 3.844 22 N -0.496 5.496 23 C 0.100 3.900 24 C -0.157 4.157 25 C 0.088 3.912 26 O -0.185 6.185 27 H 0.265 0.735 28 H 0.036 0.964 29 H -0.009 1.009 30 H 0.128 0.872 31 H 0.044 0.956 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.195 0.805 35 H 0.053 0.947 36 H 0.102 0.898 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.374 -8.339 2.633 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.696 3.304 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.102 0.898 9 C 0.035 3.965 10 N -0.242 5.242 11 C 0.012 3.988 12 C -0.048 4.048 13 C -0.210 4.210 14 C -0.231 4.231 15 C -0.126 4.126 16 O -0.082 6.082 17 C -0.008 4.008 18 C 0.017 3.983 19 C -0.200 4.200 20 C -0.182 4.182 21 C -0.006 4.006 22 N -0.207 5.207 23 C -0.050 4.050 24 C -0.177 4.177 25 C 0.032 3.968 26 O -0.084 6.084 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.009 0.991 30 H 0.146 0.854 31 H 0.062 0.938 32 H 0.167 0.833 33 H 0.160 0.840 34 H 0.212 0.788 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.179 0.821 38 H 0.178 0.822 39 H 0.181 0.819 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.359 -8.267 3.585 16.114 hybrid contribution 0.341 1.376 -1.290 1.917 sum 13.700 -6.891 2.295 15.506 Atomic orbital electron populations 1.69870 1.06079 1.27031 1.50264 1.24846 0.94703 0.98764 0.94549 0.86952 0.80603 0.84222 0.78635 1.20125 1.20976 1.19026 1.20947 0.88232 0.94912 1.51313 0.89797 1.20317 0.97571 0.82733 0.95829 1.61865 1.08738 1.19892 1.33699 1.20567 1.04546 0.83108 0.90561 1.22660 0.85779 0.93636 1.02714 1.21634 1.01591 0.92313 1.05449 1.21831 0.96151 0.98408 1.06723 1.23846 0.98209 0.85087 1.05443 1.83987 1.39744 1.17793 1.66628 1.20712 0.91749 1.02045 0.86268 1.22393 0.98244 0.81173 0.96494 1.22050 1.08195 1.00747 0.89004 1.20997 1.06463 0.94285 0.96438 1.22251 0.92839 0.99228 0.86329 1.67735 1.13936 1.02495 1.36527 1.22433 0.96372 0.92464 0.93769 1.20983 1.05845 0.99978 0.90896 1.19752 0.98833 0.95181 0.83006 1.83956 1.71914 1.33300 1.19218 0.92486 0.94654 0.99115 0.85380 0.93753 0.83255 0.83967 0.78780 0.92901 0.87951 0.82118 0.82215 0.81875 0.84151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.96 55.43 0.77 -25.77 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 21.04 27.47 -169.99 -4.67 16.37 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -13.88 8.79 -34.44 -0.30 -14.19 16 8 H 0.08 2.43 7.55 -52.49 -0.40 2.03 16 9 C 0.16 3.70 3.61 -4.98 -0.02 3.68 16 10 N -0.52 -10.00 4.34 -238.96 -1.04 -11.04 16 11 C 0.14 2.42 5.33 -4.98 -0.03 2.40 16 12 C 0.00 0.04 6.16 -35.63 -0.22 -0.18 16 13 C -0.19 -3.03 10.81 -39.70 -0.43 -3.46 16 14 C -0.21 -2.79 10.91 -39.70 -0.43 -3.23 16 15 C -0.06 -0.70 12.09 29.42 0.36 -0.35 16 16 O -0.18 -2.70 10.20 5.70 0.06 -2.64 16 17 C 0.12 1.96 5.31 -4.97 -0.03 1.94 16 18 C 0.06 1.11 6.08 -35.78 -0.22 0.90 16 19 C -0.18 -2.82 11.00 -37.67 -0.41 -3.24 16 20 C -0.18 -2.83 6.44 -105.19 -0.68 -3.50 16 21 C 0.16 2.18 11.26 -17.25 -0.19 1.98 16 22 N -0.50 -7.03 10.35 -13.06 -0.14 -7.17 16 23 C 0.10 1.26 11.14 -17.53 -0.20 1.07 16 24 C -0.16 -2.16 10.13 -39.40 -0.40 -2.56 16 25 C 0.09 1.47 7.49 -38.25 -0.29 1.18 16 26 O -0.18 -3.39 10.17 4.88 0.05 -3.34 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.04 0.87 6.16 -51.93 -0.32 0.55 16 29 H -0.01 -0.20 7.55 -51.93 -0.39 -0.59 16 30 H 0.13 2.47 6.58 -51.93 -0.34 2.13 16 31 H 0.04 0.69 8.00 -51.93 -0.42 0.28 16 32 H 0.15 2.48 8.06 -52.49 -0.42 2.06 16 33 H 0.14 1.54 8.06 -52.48 -0.42 1.11 16 34 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.05 0.82 8.00 -51.93 -0.42 0.41 16 36 H 0.10 1.47 6.92 -51.93 -0.36 1.11 16 37 H 0.16 2.21 8.06 -52.48 -0.42 1.79 16 38 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.16 1.46 8.06 -52.48 -0.42 1.03 16 40 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 344.72 15.07 5.19 5.19 Total: -1.00 -31.81 344.72 -8.11 -39.92 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.77 Total: 4.07 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -3.58 Total: -15.59 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.40 Total: -43.98 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: 0.11 Total: -5.98 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.81 -8.11 -39.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593564049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.047 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds