Wall clock time and date at job start Fri Apr 10 2020 22:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99536 * 2 1 4 4 H 1.48496 * 109.47403 * 269.99808 * 3 2 1 5 5 H 1.48505 * 109.47446 * 29.99660 * 3 2 1 6 6 H 1.48504 * 109.47464 * 149.99595 * 3 2 1 7 7 C 1.37873 * 120.00820 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99540 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00382 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.47069 * 180.02562 * 9 7 2 11 11 C 1.46895 * 111.00128 * 66.04744 * 10 9 7 12 12 C 1.50694 * 109.47383 * 199.65012 * 11 10 9 13 13 C 1.34520 * 125.78648 * 84.84373 * 12 11 10 14 14 C 1.41382 * 106.83687 * 180.02562 * 13 12 11 15 15 C 1.34513 * 106.84508 * 359.97438 * 14 13 12 16 16 O 1.34302 * 125.79082 * 264.54108 * 12 11 10 17 17 C 1.46901 * 110.99997 * 190.00320 * 10 9 7 18 18 C 1.50706 * 109.47140 * 75.63793 * 17 10 9 19 19 C 1.34033 * 124.90800 * 84.84656 * 18 17 10 20 20 C 1.46636 * 106.17729 * 180.02562 * 19 18 17 21 21 C 1.39140 * 135.25876 * 180.02562 * 20 19 18 22 22 N 1.31766 * 120.09109 * 179.97438 * 21 20 19 23 23 C 1.32251 * 122.11267 * 359.97438 * 22 21 20 24 24 C 1.37801 * 121.52028 * 359.97438 * 23 22 21 25 25 C 1.39156 * 118.91642 * 0.02562 * 24 23 22 26 26 O 1.34371 * 134.63316 * 179.68190 * 25 24 23 27 27 H 0.97002 * 120.00763 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46974 * 60.00588 * 9 7 2 29 29 H 1.09001 * 109.47161 * 300.00464 * 9 7 2 30 30 H 1.08998 * 109.47402 * 319.65772 * 11 10 9 31 31 H 1.09002 * 109.46950 * 79.65091 * 11 10 9 32 32 H 1.07997 * 126.57992 * 359.96612 * 13 12 11 33 33 H 1.08005 * 126.57666 * 179.97438 * 14 13 12 34 34 H 1.07999 * 125.79157 * 179.97438 * 15 14 13 35 35 H 1.09003 * 109.47115 * 315.64361 * 17 10 9 36 36 H 1.08998 * 109.47427 * 195.64169 * 17 10 9 37 37 H 1.08005 * 126.91513 * 0.02562 * 19 18 17 38 38 H 1.08002 * 119.95446 * 0.02562 * 21 20 19 39 39 H 1.08006 * 119.23382 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.54066 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4463 2.6528 0.7000 6 1 3.5465 1.4405 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1938 0.0000 10 7 4.0014 -2.5788 0.0001 11 6 3.6515 -3.2610 -1.2529 12 6 3.7205 -4.7525 -1.0490 13 6 2.7372 -5.5249 -0.5530 14 6 3.2274 -6.8509 -0.5354 15 6 4.4807 -6.8096 -1.0223 16 8 4.7719 -5.5368 -1.3371 17 6 5.4503 -2.6248 0.2377 18 6 5.7285 -2.3682 1.6965 19 6 5.7061 -3.3023 2.6575 20 6 6.0320 -2.6097 3.9082 21 6 6.1719 -2.9879 5.2399 22 7 6.4832 -2.0898 6.1525 23 6 6.6730 -0.8165 5.8498 24 6 6.5550 -0.3583 4.5555 25 6 6.2279 -1.2619 3.5491 26 8 6.0314 -1.1678 2.2231 27 1 -0.4851 0.8400 -0.0004 28 1 3.8752 -0.6794 0.8895 29 1 3.8746 -0.6805 -0.8905 30 1 2.6406 -2.9811 -1.5491 31 1 4.3531 -2.9683 -2.0341 32 1 1.7611 -5.1952 -0.2292 33 1 2.6973 -7.7286 -0.1962 34 1 5.1395 -7.6568 -1.1432 35 1 5.9419 -1.8615 -0.3655 36 1 5.8327 -3.6076 -0.0377 37 1 5.4911 -4.3537 2.5353 38 1 6.0260 -4.0191 5.5258 39 1 6.9263 -0.1197 6.6352 40 1 6.7138 0.6850 4.3261 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593564049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:34 Heat of formation + Delta-G solvation = 50.863058 kcal Electronic energy + Delta-G solvation = -25230.412921 eV Core-core repulsion = 21592.207313 eV Total energy + Delta-G solvation = -3638.205608 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.71140 -43.36402 -40.03351 -38.67118 -34.82492 -34.12272 -33.79435 -32.76381 -32.00902 -31.40769 -29.43161 -27.53210 -25.66882 -24.78066 -23.52810 -22.83716 -22.55802 -21.92467 -21.13206 -19.12218 -18.91961 -18.28153 -17.88997 -17.48665 -17.22816 -16.81025 -16.47267 -16.02122 -15.95662 -15.51765 -15.35891 -15.04305 -14.52579 -14.41383 -14.34666 -14.13583 -13.68357 -13.64888 -13.50437 -13.44558 -13.25944 -12.79446 -12.62442 -12.45252 -12.26535 -11.90087 -11.55174 -11.27921 -10.83224 -10.76623 -10.74068 -10.42853 -9.43252 -9.24663 -9.23454 -8.32030 -6.35086 -0.30456 0.19718 0.85436 1.21664 1.28756 1.32339 1.41714 1.54275 1.81551 2.14279 2.29486 2.73680 3.01270 3.17765 3.28056 3.44835 3.57289 3.84130 3.90315 4.03125 4.06617 4.15942 4.24926 4.29395 4.36153 4.48762 4.49613 4.62274 4.70399 4.79019 4.84150 4.90108 4.98263 5.01822 5.17541 5.28004 5.31455 5.45130 5.47887 5.69543 5.81131 6.00033 6.07130 6.33288 6.47012 6.71177 6.88559 7.28159 8.83821 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.008023 B = 0.006096 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3489.043224 B = 4591.697597 C = 7282.393848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.017 3.983 3 Si 0.934 3.066 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.514 4.514 8 H 0.047 0.953 9 C 0.175 3.825 10 N -0.530 5.530 11 C 0.144 3.856 12 C -0.014 4.014 13 C -0.208 4.208 14 C -0.226 4.226 15 C -0.035 4.035 16 O -0.187 6.187 17 C 0.127 3.873 18 C 0.036 3.964 19 C -0.170 4.170 20 C -0.199 4.199 21 C 0.158 3.842 22 N -0.509 5.509 23 C 0.109 3.891 24 C -0.165 4.165 25 C 0.059 3.941 26 O -0.207 6.207 27 H 0.267 0.733 28 H 0.022 0.978 29 H -0.001 1.001 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.128 0.872 33 H 0.166 0.834 34 H 0.244 0.756 35 H 0.061 0.939 36 H 0.124 0.876 37 H 0.178 0.822 38 H 0.188 0.812 39 H 0.203 0.797 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.962 -9.125 3.338 18.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.181 4.181 3 Si 0.758 3.242 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.552 4.552 8 H 0.066 0.934 9 C 0.049 3.951 10 N -0.255 5.255 11 C 0.018 3.982 12 C -0.064 4.064 13 C -0.228 4.228 14 C -0.244 4.244 15 C -0.102 4.102 16 O -0.084 6.084 17 C -0.001 4.001 18 C -0.012 4.012 19 C -0.191 4.191 20 C -0.202 4.202 21 C -0.004 4.004 22 N -0.219 5.219 23 C -0.041 4.041 24 C -0.186 4.186 25 C 0.004 3.996 26 O -0.108 6.108 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.016 0.984 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.146 0.854 33 H 0.183 0.817 34 H 0.260 0.740 35 H 0.079 0.921 36 H 0.142 0.858 37 H 0.195 0.805 38 H 0.205 0.795 39 H 0.220 0.780 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 15.965 -9.073 4.284 18.856 hybrid contribution -0.459 1.466 -1.415 2.088 sum 15.506 -7.608 2.869 17.508 Atomic orbital electron populations 1.70015 1.07858 1.28038 1.52240 1.25683 0.95454 1.02570 0.94434 0.85916 0.79318 0.79609 0.79395 1.18546 1.20799 1.18284 1.21167 0.90498 0.93509 1.50031 0.93437 1.19968 0.94741 0.85175 0.95265 1.61702 1.11165 1.17635 1.35002 1.20332 1.03273 0.84313 0.90323 1.22214 0.86658 0.93055 1.04456 1.21719 1.00978 0.94349 1.05765 1.22086 0.97003 0.97717 1.07634 1.24777 0.98212 0.84882 1.02301 1.83982 1.38958 1.18753 1.66672 1.20738 0.89519 1.03469 0.86325 1.22568 1.00119 0.81409 0.97066 1.22320 1.06632 1.01318 0.88844 1.21223 1.07576 0.94175 0.97242 1.22707 0.91663 1.00555 0.85524 1.67845 1.14281 1.03240 1.36575 1.23103 0.94269 0.92552 0.94224 1.21381 1.05651 1.00819 0.90708 1.20340 0.99803 0.96558 0.82891 1.83899 1.72639 1.34010 1.20214 0.92388 0.96019 0.98375 0.88421 0.91846 0.85362 0.81677 0.73973 0.92126 0.85827 0.80460 0.79533 0.78043 0.82092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.95 13.96 21.44 0.30 -57.65 16 2 C 0.02 0.97 5.47 84.65 0.46 1.43 16 3 Si 0.93 43.97 27.47 68.60 1.88 45.85 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.26 -11.80 6.54 99.48 0.65 -11.15 16 7 C -0.51 -28.83 8.79 25.60 0.22 -28.61 16 8 H 0.05 2.94 7.55 -2.91 -0.02 2.92 16 9 C 0.17 8.19 3.61 85.56 0.31 8.50 16 10 N -0.53 -20.83 4.34 -909.95 -3.94 -24.78 16 11 C 0.14 5.15 5.33 85.56 0.46 5.61 16 12 C -0.01 -0.44 6.16 24.83 0.15 -0.29 16 13 C -0.21 -6.75 10.81 22.19 0.24 -6.51 16 14 C -0.23 -5.52 10.91 22.19 0.24 -5.28 16 15 C -0.03 -0.72 12.09 66.97 0.81 0.09 16 16 O -0.19 -5.04 10.20 -2.52 -0.03 -5.07 16 17 C 0.13 4.07 5.31 85.56 0.45 4.52 16 18 C 0.04 1.21 6.08 24.73 0.15 1.36 16 19 C -0.17 -5.25 11.00 23.51 0.26 -4.99 16 20 C -0.20 -6.12 6.44 -20.23 -0.13 -6.25 16 21 C 0.16 4.12 11.26 84.92 0.96 5.08 16 22 N -0.51 -13.25 10.35 -195.22 -2.02 -15.27 16 23 C 0.11 2.46 11.14 84.53 0.94 3.40 16 24 C -0.17 -4.30 10.13 22.39 0.23 -4.08 16 25 C 0.06 1.94 7.49 23.13 0.17 2.11 16 26 O -0.21 -7.63 10.17 -5.46 -0.06 -7.69 16 27 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 28 H 0.02 1.08 6.16 -2.39 -0.01 1.07 16 29 H 0.00 -0.06 7.55 -2.39 -0.02 -0.08 16 30 H 0.10 4.04 6.58 -2.39 -0.02 4.02 16 31 H 0.06 1.97 8.00 -2.39 -0.02 1.95 16 32 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 33 H 0.17 3.17 8.06 -2.91 -0.02 3.14 16 34 H 0.24 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.06 1.84 8.00 -2.39 -0.02 1.82 16 36 H 0.12 3.37 6.92 -2.39 -0.02 3.36 16 37 H 0.18 4.64 8.06 -2.91 -0.02 4.62 16 38 H 0.19 3.62 8.06 -2.91 -0.02 3.60 16 39 H 0.20 2.83 8.06 -2.91 -0.02 2.81 16 40 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -71.81 344.72 3.07 -68.74 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 1.00 Total: 19.77 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: 5.93 Total: -23.90 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -5.67 Total: -97.70 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.08 Total: -12.76 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.85 kcal Total: -71.81 3.07 -68.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593564049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.601 kcal (2) G-P(sol) polarization free energy of solvation -71.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds