Wall clock time and date at job start Fri Apr 10 2020 22:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38227 * 120.41674 * 2 1 4 4 N 1.31853 * 120.76544 * 179.74451 * 3 2 1 5 5 C 1.31878 * 121.72334 * 0.56925 * 4 3 2 6 6 C 1.50706 * 119.61960 * 179.70804 * 5 4 3 7 7 C 1.53000 * 109.47116 * 269.72797 * 6 5 4 8 8 N 1.46496 * 109.47378 * 179.97438 * 7 6 5 9 9 S 1.65599 * 120.00174 * 164.99886 * 8 7 6 10 10 O 1.42104 * 104.27755 * 181.07595 * 9 8 7 11 11 O 1.42101 * 104.27591 * 308.93397 * 9 8 7 12 12 C 1.81392 * 104.44909 * 65.00454 * 9 8 7 13 13 C 1.52994 * 109.47496 * 180.02562 * 12 9 8 14 14 C 1.50698 * 109.47907 * 179.97438 * 13 12 9 15 15 H 1.08001 * 119.99485 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00399 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00404 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00160 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46702 * 59.99603 * 18 16 14 20 20 H 1.48494 * 109.47228 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47044 * 300.00350 * 18 16 14 22 22 C 1.38187 * 120.76522 * 359.43340 * 5 4 3 23 23 C 1.50704 * 120.41654 * 180.29702 * 22 5 4 24 24 C 1.38626 * 120.42512 * 180.02562 * 2 1 3 25 25 H 1.09005 * 109.46880 * 269.97486 * 1 2 3 26 26 H 1.08992 * 109.47436 * 29.97879 * 1 2 3 27 27 H 1.09001 * 109.46777 * 149.97873 * 1 2 3 28 28 H 1.08009 * 119.61685 * 0.04929 * 3 2 1 29 29 H 1.09000 * 109.46646 * 29.72211 * 6 5 4 30 30 H 1.09000 * 109.47248 * 149.72928 * 6 5 4 31 31 H 1.09000 * 109.47214 * 300.00167 * 7 6 5 32 32 H 1.09008 * 109.47142 * 59.99333 * 7 6 5 33 33 H 0.97003 * 120.00105 * 345.00741 * 8 7 6 34 34 H 1.09004 * 109.47151 * 300.00032 * 12 9 8 35 35 H 1.09001 * 109.47402 * 59.99741 * 12 9 8 36 36 H 1.09002 * 109.47395 * 300.00028 * 13 12 9 37 37 H 1.09005 * 109.47485 * 59.99731 * 13 12 9 38 38 H 0.96997 * 120.00256 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.47185 * 90.00072 * 23 22 5 40 40 H 1.09001 * 109.46984 * 209.99820 * 23 22 5 41 41 H 1.09001 * 109.47353 * 329.99873 * 23 22 5 42 42 H 1.08005 * 120.78845 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.2001 0.0051 5 6 4.2256 0.0826 -0.0009 6 6 5.7313 0.1471 -0.0014 7 6 6.2404 0.1693 -1.4440 8 7 7.7040 0.2326 -1.4446 9 16 8.5468 -0.1023 -2.8301 10 8 9.9100 0.0314 -2.4520 11 8 8.0259 -1.3512 -3.2639 12 6 8.0723 1.2188 -3.9790 13 6 8.7937 1.0179 -5.3132 14 6 8.3991 2.1151 -6.2679 15 1 7.7030 2.8790 -5.9546 16 6 8.9267 2.1436 -7.5414 17 7 9.7748 1.2137 -7.9229 18 14 8.4370 3.5033 -8.7251 19 1 8.8148 4.8195 -8.1505 20 1 9.1383 3.3090 -10.0195 21 1 6.9690 3.4625 -8.9457 22 6 3.5948 -1.1469 -0.0010 23 6 4.4029 -2.4190 -0.0010 24 6 2.2090 -1.1954 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6674 2.1277 0.0008 29 1 6.0563 1.0518 0.5125 30 1 6.1326 -0.7266 0.5121 31 1 5.9153 -0.7353 -1.9580 32 1 5.8390 1.0430 -1.9576 33 1 8.1794 0.4707 -0.6332 34 1 6.9948 1.1898 -4.1411 35 1 8.3503 2.1846 -3.5570 36 1 9.8713 1.0467 -5.1515 37 1 8.5153 0.0522 -5.7351 38 1 10.1463 1.2340 -8.8186 39 1 4.5977 -2.7258 1.0266 40 1 3.8464 -3.2029 -0.5149 41 1 5.3489 -2.2486 -0.5148 42 1 1.6890 -2.1419 -0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594476189.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:37 Heat of formation + Delta-G solvation = -66.088272 kcal Electronic energy + Delta-G solvation = -23183.383890 eV Core-core repulsion = 19675.550843 eV Total energy + Delta-G solvation = -3507.833047 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.75478 -36.68941 -36.26199 -35.41071 -33.99895 -33.87060 -33.85300 -31.13965 -30.29939 -27.71520 -26.57020 -25.57840 -23.74142 -22.50228 -21.64947 -20.93630 -18.94983 -17.49760 -17.26384 -16.57807 -16.40780 -15.92556 -15.47349 -14.92023 -14.72984 -14.65532 -14.53517 -14.36168 -13.54691 -13.40251 -13.37357 -13.16714 -12.90693 -12.85144 -12.65539 -12.49810 -12.22353 -11.78330 -11.70364 -11.60093 -11.54153 -11.45852 -11.28275 -11.04885 -10.94784 -10.42344 -10.35212 -9.80871 -9.77289 -9.64797 -9.47645 -9.02398 -8.85910 -8.48267 -6.10613 -4.16113 0.74426 0.87257 1.03068 3.12845 3.28809 3.33361 3.35479 3.47027 4.05433 4.26425 4.37952 4.39720 4.46472 4.57486 4.69182 4.73144 4.82507 4.89129 5.06485 5.12493 5.18369 5.24118 5.24499 5.34965 5.43432 5.47157 5.50717 5.66735 5.70278 5.72684 5.76960 5.85775 5.99015 5.99426 6.07889 6.47828 6.51858 7.10047 7.32116 7.38518 7.77296 7.82453 8.19755 8.87158 9.48542 11.00430 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.014276 B = 0.003100 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.897314 B = 9029.087156 C =10315.549325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.139 4.139 3 C 0.094 3.906 4 N -0.472 5.472 5 C 0.124 3.876 6 C -0.077 4.077 7 C 0.123 3.877 8 N -1.128 6.128 9 S 2.594 3.406 10 O -0.967 6.967 11 O -0.967 6.967 12 C -0.590 4.590 13 C 0.028 3.972 14 C -0.521 4.521 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.891 5.891 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.078 4.078 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.154 0.846 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.413 0.587 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.265 0.735 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.695 -4.010 19.435 25.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.141 4.141 3 C -0.063 4.063 4 N -0.179 5.179 5 C -0.015 4.015 6 C -0.117 4.117 7 C -0.004 4.004 8 N -0.885 5.885 9 S 2.692 3.308 10 O -0.957 6.957 11 O -0.957 6.957 12 C -0.723 4.723 13 C -0.011 4.011 14 C -0.560 4.560 15 H 0.079 0.921 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.125 4.125 23 C -0.177 4.177 24 C -0.104 4.104 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.172 0.828 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.246 0.754 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.648 -4.086 19.034 24.977 hybrid contribution -1.005 0.680 -0.464 1.299 sum -16.653 -3.406 18.569 25.174 Atomic orbital electron populations 1.20715 0.90215 1.03238 1.02490 1.20940 0.97582 0.94202 1.01391 1.22632 0.89657 0.97505 0.96550 1.67487 1.08255 1.30761 1.11419 1.20914 0.96008 0.87992 0.96567 1.20714 0.88939 1.04596 0.97419 1.21171 0.79571 1.02690 0.97007 1.55789 1.14930 1.88843 1.28928 1.05501 0.73720 0.77158 0.74447 1.93555 1.32948 1.87807 1.81429 1.93534 1.80351 1.40095 1.81739 1.30442 1.11110 1.16481 1.14309 1.18956 0.95533 0.99330 0.87254 1.20979 1.27364 1.10616 0.97077 0.92088 1.25062 0.94892 0.96239 0.98267 1.69942 1.29934 1.33521 1.19520 0.86529 0.78725 0.82023 0.79992 1.20064 1.21079 1.20082 1.20773 0.94531 0.96578 1.00652 1.20886 1.00331 0.93712 1.02768 1.21382 0.93273 0.98261 0.97495 0.90984 0.91075 0.91322 0.82833 0.89096 0.89183 0.90153 0.91219 0.75396 0.86370 0.86020 0.94810 0.94831 0.92483 0.90736 0.91028 0.90140 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.04 36.01 0.36 -0.23 16 2 C -0.14 -1.16 5.90 -104.48 -0.62 -1.78 16 3 C 0.09 0.91 10.86 -17.55 -0.19 0.72 16 4 N -0.47 -5.55 10.27 -9.47 -0.10 -5.64 16 5 C 0.12 1.35 6.03 -82.59 -0.50 0.85 16 6 C -0.08 -0.76 4.96 -27.88 -0.14 -0.90 16 7 C 0.12 1.44 5.98 -4.04 -0.02 1.42 16 8 N -1.13 -14.34 5.88 -10.61 -0.06 -14.41 16 9 S 2.59 46.08 5.46 -107.50 -0.59 45.49 16 10 O -0.97 -19.96 18.08 -57.54 -1.04 -21.00 16 11 O -0.97 -19.84 17.50 -57.54 -1.01 -20.84 16 12 C -0.59 -11.42 6.01 37.15 0.22 -11.20 16 13 C 0.03 0.73 4.98 -27.89 -0.14 0.59 16 14 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 18 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.12 -1.18 5.90 -104.48 -0.62 -1.80 16 23 C -0.12 -0.94 9.21 36.01 0.33 -0.61 16 24 C -0.08 -0.67 9.55 -39.28 -0.37 -1.04 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 27 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 28 H 0.15 1.13 8.06 -52.48 -0.42 0.70 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 0.74 6.69 -51.93 -0.35 0.39 16 31 H 0.08 0.99 6.96 -51.93 -0.36 0.62 16 32 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 33 H 0.41 4.28 8.62 -34.47 -0.30 3.99 16 34 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 35 H 0.12 2.14 8.14 -51.92 -0.42 1.71 16 36 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 41 H 0.08 0.70 5.87 -51.93 -0.31 0.39 16 42 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 365.04 15.07 5.50 5.50 Total: -1.00 -36.24 365.04 -10.01 -46.25 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.34 Total: 1.53 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -2.09 Total: -27.31 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.58 Total: -46.02 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -2.05 Total: -41.84 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 46.08 SS G_CDS: -0.59 Total: 45.49 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.24 -10.01 -46.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594476189.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.836 kcal (2) G-P(sol) polarization free energy of solvation -36.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds