Wall clock time and date at job start Fri Apr 10 2020 22:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38227 * 120.41674 * 2 1 4 4 N 1.31853 * 120.76544 * 179.74451 * 3 2 1 5 5 C 1.31878 * 121.72334 * 0.56925 * 4 3 2 6 6 C 1.50706 * 119.61960 * 179.70804 * 5 4 3 7 7 C 1.53000 * 109.47116 * 269.72797 * 6 5 4 8 8 N 1.46496 * 109.47378 * 179.97438 * 7 6 5 9 9 S 1.65599 * 120.00174 * 164.99886 * 8 7 6 10 10 O 1.42104 * 104.27755 * 181.07595 * 9 8 7 11 11 O 1.42101 * 104.27591 * 308.93397 * 9 8 7 12 12 C 1.81392 * 104.44909 * 65.00454 * 9 8 7 13 13 C 1.52994 * 109.47496 * 180.02562 * 12 9 8 14 14 C 1.50698 * 109.47907 * 179.97438 * 13 12 9 15 15 H 1.08001 * 119.99485 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00399 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00404 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00160 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46702 * 59.99603 * 18 16 14 20 20 H 1.48494 * 109.47228 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47044 * 300.00350 * 18 16 14 22 22 C 1.38187 * 120.76522 * 359.43340 * 5 4 3 23 23 C 1.50704 * 120.41654 * 180.29702 * 22 5 4 24 24 C 1.38626 * 120.42512 * 180.02562 * 2 1 3 25 25 H 1.09005 * 109.46880 * 269.97486 * 1 2 3 26 26 H 1.08992 * 109.47436 * 29.97879 * 1 2 3 27 27 H 1.09001 * 109.46777 * 149.97873 * 1 2 3 28 28 H 1.08009 * 119.61685 * 0.04929 * 3 2 1 29 29 H 1.09000 * 109.46646 * 29.72211 * 6 5 4 30 30 H 1.09000 * 109.47248 * 149.72928 * 6 5 4 31 31 H 1.09000 * 109.47214 * 300.00167 * 7 6 5 32 32 H 1.09008 * 109.47142 * 59.99333 * 7 6 5 33 33 H 0.97003 * 120.00105 * 345.00741 * 8 7 6 34 34 H 1.09004 * 109.47151 * 300.00032 * 12 9 8 35 35 H 1.09001 * 109.47402 * 59.99741 * 12 9 8 36 36 H 1.09002 * 109.47395 * 300.00028 * 13 12 9 37 37 H 1.09005 * 109.47485 * 59.99731 * 13 12 9 38 38 H 0.96997 * 120.00256 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.47185 * 90.00072 * 23 22 5 40 40 H 1.09001 * 109.46984 * 209.99820 * 23 22 5 41 41 H 1.09001 * 109.47353 * 329.99873 * 23 22 5 42 42 H 1.08005 * 120.78845 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.2001 0.0051 5 6 4.2256 0.0826 -0.0009 6 6 5.7313 0.1471 -0.0014 7 6 6.2404 0.1693 -1.4440 8 7 7.7040 0.2326 -1.4446 9 16 8.5468 -0.1023 -2.8301 10 8 9.9100 0.0314 -2.4520 11 8 8.0259 -1.3512 -3.2639 12 6 8.0723 1.2188 -3.9790 13 6 8.7937 1.0179 -5.3132 14 6 8.3991 2.1151 -6.2679 15 1 7.7030 2.8790 -5.9546 16 6 8.9267 2.1436 -7.5414 17 7 9.7748 1.2137 -7.9229 18 14 8.4370 3.5033 -8.7251 19 1 8.8148 4.8195 -8.1505 20 1 9.1383 3.3090 -10.0195 21 1 6.9690 3.4625 -8.9457 22 6 3.5948 -1.1469 -0.0010 23 6 4.4029 -2.4190 -0.0010 24 6 2.2090 -1.1954 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6674 2.1277 0.0008 29 1 6.0563 1.0518 0.5125 30 1 6.1326 -0.7266 0.5121 31 1 5.9153 -0.7353 -1.9580 32 1 5.8390 1.0430 -1.9576 33 1 8.1794 0.4707 -0.6332 34 1 6.9948 1.1898 -4.1411 35 1 8.3503 2.1846 -3.5570 36 1 9.8713 1.0467 -5.1515 37 1 8.5153 0.0522 -5.7351 38 1 10.1463 1.2340 -8.8186 39 1 4.5977 -2.7258 1.0266 40 1 3.8464 -3.2029 -0.5149 41 1 5.3489 -2.2486 -0.5148 42 1 1.6890 -2.1419 -0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594476189.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:37 Heat of formation + Delta-G solvation = -92.270868 kcal Electronic energy + Delta-G solvation = -23184.519252 eV Core-core repulsion = 19675.550843 eV Total energy + Delta-G solvation = -3508.968409 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.43313 -38.18664 -37.29564 -36.97359 -35.89641 -34.76948 -34.52075 -33.12733 -31.08346 -28.30456 -27.59576 -27.26779 -24.53591 -23.61816 -23.21539 -21.62199 -20.33953 -19.11872 -18.29972 -17.96188 -17.51035 -17.04779 -16.91344 -16.52662 -16.10325 -15.67173 -15.29128 -15.22430 -15.05053 -14.47038 -14.13806 -14.01736 -13.93385 -13.74335 -13.59579 -13.38475 -13.22152 -13.20442 -13.14012 -13.05085 -12.91332 -12.80246 -12.56981 -12.49060 -12.22879 -12.16278 -12.06251 -11.73838 -11.19255 -10.64317 -10.46328 -10.42033 -10.31928 -9.54338 -8.26410 -6.40528 -0.68173 0.12944 0.35641 1.40054 1.43601 1.51813 1.83315 2.37661 2.75328 2.81221 3.06750 3.26161 3.39000 3.73349 3.85153 3.93084 3.94938 4.04977 4.10031 4.12681 4.22629 4.34104 4.45498 4.57055 4.62475 4.75622 4.78362 4.82369 4.84739 4.88050 5.00463 5.09555 5.17515 5.27420 5.28389 5.30632 5.35883 5.37856 5.67922 5.84257 6.06249 6.13923 6.72800 7.06523 7.29562 8.85668 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.014276 B = 0.003100 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.897314 B = 9029.087156 C =10315.549325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.137 4.137 3 C 0.075 3.925 4 N -0.499 5.499 5 C 0.101 3.899 6 C -0.070 4.070 7 C 0.117 3.883 8 N -1.105 6.105 9 S 2.626 3.374 10 O -0.996 6.996 11 O -0.994 6.994 12 C -0.592 4.592 13 C 0.021 3.979 14 C -0.542 4.542 15 H 0.074 0.926 16 C -0.003 4.003 17 N -0.934 5.934 18 Si 0.973 3.027 19 H -0.264 1.264 20 H -0.283 1.283 21 H -0.264 1.264 22 C -0.131 4.131 23 C -0.119 4.119 24 C -0.087 4.087 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.170 0.830 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.428 0.572 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.008 0.992 37 H 0.008 0.992 38 H 0.268 0.732 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.808 -3.327 20.474 28.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.139 4.139 3 C -0.082 4.082 4 N -0.207 5.207 5 C -0.037 4.037 6 C -0.110 4.110 7 C -0.009 4.009 8 N -0.867 5.867 9 S 2.722 3.278 10 O -0.986 6.986 11 O -0.984 6.984 12 C -0.724 4.724 13 C -0.018 4.018 14 C -0.581 4.581 15 H 0.092 0.908 16 C -0.201 4.201 17 N -0.573 5.573 18 Si 0.797 3.203 19 H -0.188 1.188 20 H -0.208 1.208 21 H -0.188 1.188 22 C -0.133 4.133 23 C -0.176 4.176 24 C -0.112 4.112 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.187 0.813 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.264 0.736 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -17.759 -3.389 20.085 27.023 hybrid contribution -0.432 0.430 -0.700 0.928 sum -18.191 -2.959 19.384 26.747 Atomic orbital electron populations 1.20774 0.88080 1.04085 1.03485 1.21275 0.99144 0.93684 0.99830 1.23016 0.89383 0.98900 0.96919 1.67446 1.09380 1.31534 1.12367 1.21053 0.96298 0.88446 0.97949 1.20662 0.88765 1.05617 0.95912 1.21335 0.78261 1.02599 0.98735 1.55235 1.15466 1.88392 1.27617 1.04288 0.72899 0.76014 0.74603 1.93510 1.35147 1.87942 1.81997 1.93498 1.80748 1.41395 1.82761 1.30369 1.11582 1.18634 1.11818 1.18812 0.94744 0.97784 0.90460 1.21500 1.27438 1.11315 0.97864 0.90825 1.26106 0.94728 0.98860 1.00449 1.70088 1.31337 1.35721 1.20157 0.85376 0.78831 0.78835 0.77291 1.18825 1.20812 1.18820 1.21012 0.95320 0.96713 1.00249 1.20918 0.99732 0.93289 1.03696 1.21735 0.93109 0.99404 0.97002 0.89778 0.90322 0.90409 0.81296 0.88582 0.87662 0.90650 0.91029 0.73558 0.84473 0.84013 0.97379 0.97366 0.92338 0.89279 0.90102 0.91116 0.82643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.04 71.24 0.72 -0.18 16 2 C -0.14 -2.05 5.90 -19.77 -0.12 -2.16 16 3 C 0.08 1.37 10.86 84.69 0.92 2.29 16 4 N -0.50 -11.33 10.27 -183.87 -1.89 -13.22 16 5 C 0.10 2.08 6.03 42.54 0.26 2.34 16 6 C -0.07 -1.28 4.96 29.85 0.15 -1.13 16 7 C 0.12 2.61 5.98 86.38 0.52 3.13 16 8 N -1.11 -26.62 5.88 -187.49 -1.10 -27.72 16 9 S 2.63 92.81 5.46 -56.49 -0.31 92.50 16 10 O -1.00 -41.17 18.08 -127.65 -2.31 -43.48 16 11 O -0.99 -40.98 17.50 -127.65 -2.23 -43.21 16 12 C -0.59 -22.80 6.01 71.98 0.43 -22.37 16 13 C 0.02 1.11 4.98 29.85 0.15 1.25 16 14 C -0.54 -30.57 9.11 25.60 0.23 -30.33 16 15 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 16 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 17 N -0.93 -57.29 13.29 21.44 0.28 -57.01 16 18 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 19 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 22 C -0.13 -2.32 5.90 -19.77 -0.12 -2.44 16 23 C -0.12 -1.68 9.21 71.24 0.66 -1.02 16 24 C -0.09 -1.32 9.55 22.46 0.21 -1.10 16 25 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 26 H 0.08 0.55 8.09 -2.39 -0.02 0.53 16 27 H 0.08 0.53 8.10 -2.39 -0.02 0.51 16 28 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 29 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.11 1.55 6.69 -2.39 -0.02 1.53 16 31 H 0.08 1.79 6.96 -2.39 -0.02 1.77 16 32 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.43 8.08 8.62 -96.74 -0.83 7.25 16 34 H 0.14 4.70 8.14 -2.39 -0.02 4.68 16 35 H 0.14 4.83 8.14 -2.39 -0.02 4.81 16 36 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 38 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 0.97 8.10 -2.39 -0.02 0.95 16 41 H 0.07 1.14 5.87 -2.39 -0.01 1.12 16 42 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -78.97 365.04 -0.87 -79.84 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.19 Total: 17.92 kcal Atomic # 6 Polarization: -55.90 SS G_CDS: 4.47 Total: -51.43 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -2.71 Total: -97.95 kcal Atomic # 8 Polarization: -82.15 SS G_CDS: -4.54 Total: -86.69 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 92.81 SS G_CDS: -0.31 Total: 92.50 kcal Total: -78.97 -0.87 -79.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594476189.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.428 kcal (2) G-P(sol) polarization free energy of solvation -78.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds