Wall clock time and date at job start Fri Apr 10 2020 22:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53008 * 109.47278 * 263.15035 * 3 2 1 5 5 H 1.08998 * 109.49147 * 305.06586 * 4 3 2 6 6 C 1.53041 * 109.49542 * 65.16198 * 4 3 2 7 7 C 1.53039 * 109.53288 * 181.31896 * 6 4 3 8 8 C 1.53627 * 109.24286 * 298.50986 * 7 6 4 9 9 N 1.46924 * 108.54263 * 54.86058 * 8 7 6 10 10 S 1.65596 * 120.63199 * 126.36629 * 9 8 7 11 11 O 1.42107 * 104.27711 * 153.64895 * 10 9 8 12 12 O 1.42101 * 104.27763 * 25.79604 * 10 9 8 13 13 C 1.81393 * 104.45157 * 269.71980 * 10 9 8 14 14 C 1.53004 * 109.47421 * 184.10163 * 13 10 9 15 15 C 1.50705 * 115.54551 * 294.85403 * 14 13 10 16 16 H 1.07997 * 120.00019 * 99.51543 * 15 14 13 17 17 C 1.37879 * 119.99734 * 279.78013 * 15 14 13 18 18 N 1.31508 * 120.00112 * 6.78005 * 17 15 14 19 19 Si 1.86798 * 119.99558 * 186.77075 * 17 15 14 20 20 H 1.48502 * 109.46953 * 90.00975 * 19 17 15 21 21 H 1.48506 * 109.46979 * 210.00089 * 19 17 15 22 22 H 1.48496 * 109.47574 * 330.00371 * 19 17 15 23 23 C 1.52998 * 117.51695 * 80.55205 * 14 13 10 24 24 C 1.52998 * 60.00087 * 107.48500 * 23 14 13 25 25 C 1.46930 * 118.73671 * 306.09348 * 9 8 7 26 26 H 1.09005 * 109.46847 * 143.15310 * 3 2 1 27 27 H 1.08999 * 109.47277 * 23.14839 * 3 2 1 28 28 H 1.08999 * 109.45909 * 301.33824 * 6 4 3 29 29 H 1.08994 * 109.45751 * 61.31196 * 6 4 3 30 30 H 1.08995 * 109.50241 * 58.58737 * 7 6 4 31 31 H 1.09005 * 109.49436 * 178.65042 * 7 6 4 32 32 H 1.08998 * 109.74057 * 295.12419 * 8 7 6 33 33 H 1.08997 * 109.66367 * 174.55185 * 8 7 6 34 34 H 1.09004 * 109.47322 * 64.10045 * 13 10 9 35 35 H 1.09004 * 109.47216 * 304.10189 * 13 10 9 36 36 H 0.97002 * 120.00205 * 185.01818 * 18 17 15 37 37 H 1.09002 * 117.49687 * 214.97298 * 23 14 13 38 38 H 1.08997 * 117.50117 * 359.97438 * 23 14 13 39 39 H 1.09000 * 117.50013 * 252.51383 * 24 23 14 40 40 H 1.09002 * 117.52096 * 107.47768 * 24 23 14 41 41 H 1.08999 * 109.58367 * 173.64581 * 25 9 8 42 42 H 1.08999 * 109.58639 * 294.07476 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 0.1729 1.4323 5 1 2.6823 1.0721 1.8678 6 6 2.7175 -1.0456 2.2671 7 6 3.1986 -0.8593 3.7079 8 6 4.7308 -0.7480 3.7197 9 7 5.1278 0.3327 2.8069 10 16 6.1067 1.5618 3.3297 11 8 6.7619 2.0129 2.1522 12 8 6.8414 0.9917 4.4042 13 6 4.9586 2.8251 3.9431 14 6 5.7455 4.0675 4.3653 15 6 6.6750 3.8810 5.5368 16 1 7.7309 3.7278 5.3693 17 6 6.1766 3.9005 6.8222 18 7 4.8778 3.9477 7.0232 19 14 7.3463 3.8595 8.2781 20 1 7.7069 5.2478 8.6625 21 1 6.6864 3.1841 9.4243 22 1 8.5752 3.1140 7.9050 23 6 6.1822 5.0358 3.2641 24 6 5.0538 5.4246 4.2214 25 6 4.6446 0.2989 1.4197 26 1 2.9709 0.8232 -0.6163 27 1 2.9718 -0.9441 -0.4040 28 1 1.6327 -1.1518 2.2573 29 1 3.1738 -1.9408 1.8449 30 1 2.7622 0.0493 4.1226 31 1 2.8921 -1.7165 4.3074 32 1 5.1707 -1.6879 3.3863 33 1 5.0741 -0.5189 4.7284 34 1 4.4110 2.4332 4.8002 35 1 4.2556 3.0913 3.1537 36 1 4.5293 4.0349 7.9243 37 1 7.1418 5.5380 3.3870 38 1 5.9093 4.7877 2.2385 39 1 4.0382 5.4324 3.8256 40 1 5.2707 6.1824 4.9743 41 1 4.9312 1.2191 0.9106 42 1 5.0777 -0.5574 0.9027 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594804589.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:39 Heat of formation + Delta-G solvation = -33.313036 kcal Electronic energy + Delta-G solvation = -24951.280868 eV Core-core repulsion = 21444.869062 eV Total energy + Delta-G solvation = -3506.411806 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.07142 -36.79637 -36.68948 -36.34885 -35.11543 -33.52580 -32.07641 -31.84479 -28.16781 -27.91320 -25.50109 -24.53568 -22.58672 -21.25814 -20.50431 -19.40506 -18.54296 -17.58897 -17.13115 -16.48901 -15.63995 -15.27846 -15.18849 -14.79785 -14.70166 -14.35723 -14.12003 -13.88091 -13.50041 -13.44789 -13.21231 -13.07039 -12.68136 -12.12108 -11.95918 -11.87421 -11.85914 -11.51921 -11.31442 -11.25210 -11.15053 -11.09232 -11.02583 -10.90931 -10.61711 -10.60001 -10.51479 -10.42997 -10.12934 -9.71695 -8.98164 -8.84088 -8.59365 -8.10237 -6.17044 -4.26930 1.00746 2.55632 2.60755 3.27520 3.28726 3.35483 3.42913 3.75857 4.36798 4.42338 4.54140 4.56353 4.73125 4.88956 5.02968 5.05249 5.11107 5.12906 5.18039 5.23680 5.33632 5.40074 5.50011 5.65184 5.70296 5.79106 5.85812 5.91803 5.95709 6.00834 6.19953 6.26778 6.28065 6.37884 6.59752 6.67523 6.80109 6.95635 7.22201 7.33714 7.37788 7.78598 8.17511 8.79162 9.45154 10.91574 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.017852 B = 0.004501 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.078527 B = 6219.676726 C = 6422.953964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.210 3.790 3 C -0.024 4.024 4 C -0.105 4.105 5 H 0.087 0.913 6 C -0.113 4.113 7 C -0.137 4.137 8 C 0.121 3.879 9 N -1.010 6.010 10 S 2.605 3.395 11 O -0.972 6.972 12 O -0.945 6.945 13 C -0.553 4.553 14 C 0.044 3.956 15 C -0.513 4.513 16 H 0.068 0.932 17 C 0.082 3.918 18 N -0.875 5.875 19 Si 0.889 3.111 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.267 1.267 23 C -0.207 4.207 24 C -0.146 4.146 25 C 0.129 3.871 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.136 0.864 35 H 0.096 0.904 36 H 0.263 0.737 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.734 -9.176 -10.857 14.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.107 4.107 3 C -0.065 4.065 4 C -0.126 4.126 5 H 0.105 0.895 6 C -0.151 4.151 7 C -0.176 4.176 8 C -0.004 4.004 9 N -0.845 5.845 10 S 2.703 3.297 11 O -0.963 6.963 12 O -0.935 6.935 13 C -0.686 4.686 14 C 0.042 3.958 15 C -0.550 4.550 16 H 0.086 0.914 17 C -0.123 4.123 18 N -0.510 5.510 19 Si 0.716 3.284 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.191 1.191 23 C -0.245 4.245 24 C -0.185 4.185 25 C 0.003 3.997 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.154 0.846 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.607 -9.309 -10.749 14.948 hybrid contribution 0.034 0.292 1.023 1.064 sum -4.573 -9.017 -9.727 14.029 Atomic orbital electron populations 1.81243 1.13118 1.08989 1.08525 1.29170 0.95301 0.93109 0.93144 1.19377 0.81691 1.06075 0.99358 1.21629 0.97061 1.00743 0.93190 0.89463 1.21579 1.00587 0.97321 0.95606 1.22017 0.96153 1.02916 0.96522 1.21459 0.94244 0.90457 0.94289 1.58177 1.69275 1.39555 1.17484 1.05328 0.75743 0.74593 0.74019 1.93484 1.72210 1.82128 1.48436 1.93537 1.68086 1.75693 1.56218 1.30022 1.13732 1.14728 1.10102 1.18299 0.97197 0.85422 0.94912 1.20553 0.93417 1.51855 0.89185 0.91362 1.24923 0.95042 0.93409 0.98882 1.69987 1.11430 1.47698 1.21926 0.86606 0.81660 0.78265 0.81844 1.20481 1.21003 1.19111 1.23163 0.99644 1.07361 0.94309 1.22581 0.94159 1.00933 1.00861 1.21306 0.91658 1.03845 0.82930 0.86757 0.87004 0.92091 0.91246 0.91008 0.90778 0.91406 0.88712 0.84618 0.88572 0.92754 0.89528 0.90618 0.91535 0.89690 0.88758 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.60 18.54 42.15 0.78 -4.82 16 2 C 0.21 1.95 14.39 -20.76 -0.30 1.65 16 3 C -0.02 -0.14 5.19 -29.51 -0.15 -0.29 16 4 C -0.10 -0.85 2.31 -90.50 -0.21 -1.06 16 5 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 6 C -0.11 -0.94 5.00 -26.69 -0.13 -1.08 16 7 C -0.14 -1.39 6.10 -26.38 -0.16 -1.55 16 8 C 0.12 1.48 6.34 -3.49 -0.02 1.46 16 9 N -1.01 -13.91 3.21 -113.27 -0.36 -14.27 16 10 S 2.60 50.04 5.17 -107.50 -0.56 49.48 16 11 O -0.97 -19.87 16.73 -57.54 -0.96 -20.83 16 12 O -0.95 -21.74 16.27 -57.54 -0.94 -22.68 16 13 C -0.55 -11.14 6.03 37.16 0.22 -10.92 16 14 C 0.04 1.04 1.25 -155.66 -0.19 0.85 16 15 C -0.51 -13.73 8.07 -34.44 -0.28 -14.01 16 16 H 0.07 1.87 7.82 -52.49 -0.41 1.46 16 17 C 0.08 2.20 5.42 -17.82 -0.10 2.11 16 18 N -0.87 -23.63 13.06 55.43 0.72 -22.90 16 19 Si 0.89 21.06 29.55 -169.99 -5.02 16.04 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.21 -4.39 9.96 -26.73 -0.27 -4.66 16 24 C -0.15 -3.23 9.72 -26.73 -0.26 -3.49 16 25 C 0.13 1.29 5.60 -3.71 -0.02 1.26 16 26 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.53 7.35 -51.93 -0.38 0.15 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.34 7.09 -51.93 -0.37 0.97 16 34 H 0.14 2.90 8.06 -51.92 -0.42 2.48 16 35 H 0.10 1.61 8.09 -51.92 -0.42 1.19 16 36 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 37 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.08 1.98 8.14 -51.93 -0.42 1.55 16 41 H 0.09 0.94 7.10 -51.93 -0.37 0.57 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -33.62 360.75 -9.34 -42.97 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.58 Total: 1.29 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: -1.87 Total: -29.71 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 1.14 Total: -42.00 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -1.90 Total: -43.51 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 50.04 SS G_CDS: -0.56 Total: 49.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.62 -9.34 -42.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594804589.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.654 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds