Wall clock time and date at job start Fri Apr 10 2020 22:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53008 * 109.47278 * 263.15035 * 3 2 1 5 5 H 1.08998 * 109.49147 * 305.06586 * 4 3 2 6 6 C 1.53041 * 109.49542 * 65.16198 * 4 3 2 7 7 C 1.53039 * 109.53288 * 181.31896 * 6 4 3 8 8 C 1.53627 * 109.24286 * 298.50986 * 7 6 4 9 9 N 1.46924 * 108.54263 * 54.86058 * 8 7 6 10 10 S 1.65596 * 120.63199 * 126.36629 * 9 8 7 11 11 O 1.42107 * 104.27711 * 153.64895 * 10 9 8 12 12 O 1.42101 * 104.27763 * 25.79604 * 10 9 8 13 13 C 1.81393 * 104.45157 * 269.71980 * 10 9 8 14 14 C 1.53004 * 109.47421 * 184.10163 * 13 10 9 15 15 C 1.50705 * 115.54551 * 294.85403 * 14 13 10 16 16 H 1.07997 * 120.00019 * 99.51543 * 15 14 13 17 17 C 1.37879 * 119.99734 * 279.78013 * 15 14 13 18 18 N 1.31508 * 120.00112 * 6.78005 * 17 15 14 19 19 Si 1.86798 * 119.99558 * 186.77075 * 17 15 14 20 20 H 1.48502 * 109.46953 * 90.00975 * 19 17 15 21 21 H 1.48506 * 109.46979 * 210.00089 * 19 17 15 22 22 H 1.48496 * 109.47574 * 330.00371 * 19 17 15 23 23 C 1.52998 * 117.51695 * 80.55205 * 14 13 10 24 24 C 1.52998 * 60.00087 * 107.48500 * 23 14 13 25 25 C 1.46930 * 118.73671 * 306.09348 * 9 8 7 26 26 H 1.09005 * 109.46847 * 143.15310 * 3 2 1 27 27 H 1.08999 * 109.47277 * 23.14839 * 3 2 1 28 28 H 1.08999 * 109.45909 * 301.33824 * 6 4 3 29 29 H 1.08994 * 109.45751 * 61.31196 * 6 4 3 30 30 H 1.08995 * 109.50241 * 58.58737 * 7 6 4 31 31 H 1.09005 * 109.49436 * 178.65042 * 7 6 4 32 32 H 1.08998 * 109.74057 * 295.12419 * 8 7 6 33 33 H 1.08997 * 109.66367 * 174.55185 * 8 7 6 34 34 H 1.09004 * 109.47322 * 64.10045 * 13 10 9 35 35 H 1.09004 * 109.47216 * 304.10189 * 13 10 9 36 36 H 0.97002 * 120.00205 * 185.01818 * 18 17 15 37 37 H 1.09002 * 117.49687 * 214.97298 * 23 14 13 38 38 H 1.08997 * 117.50117 * 359.97438 * 23 14 13 39 39 H 1.09000 * 117.50013 * 252.51383 * 24 23 14 40 40 H 1.09002 * 117.52096 * 107.47768 * 24 23 14 41 41 H 1.08999 * 109.58367 * 173.64581 * 25 9 8 42 42 H 1.08999 * 109.58639 * 294.07476 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 0.1729 1.4323 5 1 2.6823 1.0721 1.8678 6 6 2.7175 -1.0456 2.2671 7 6 3.1986 -0.8593 3.7079 8 6 4.7308 -0.7480 3.7197 9 7 5.1278 0.3327 2.8069 10 16 6.1067 1.5618 3.3297 11 8 6.7619 2.0129 2.1522 12 8 6.8414 0.9917 4.4042 13 6 4.9586 2.8251 3.9431 14 6 5.7455 4.0675 4.3653 15 6 6.6750 3.8810 5.5368 16 1 7.7309 3.7278 5.3693 17 6 6.1766 3.9005 6.8222 18 7 4.8778 3.9477 7.0232 19 14 7.3463 3.8595 8.2781 20 1 7.7069 5.2478 8.6625 21 1 6.6864 3.1841 9.4243 22 1 8.5752 3.1140 7.9050 23 6 6.1822 5.0358 3.2641 24 6 5.0538 5.4246 4.2214 25 6 4.6446 0.2989 1.4197 26 1 2.9709 0.8232 -0.6163 27 1 2.9718 -0.9441 -0.4040 28 1 1.6327 -1.1518 2.2573 29 1 3.1738 -1.9408 1.8449 30 1 2.7622 0.0493 4.1226 31 1 2.8921 -1.7165 4.3074 32 1 5.1707 -1.6879 3.3863 33 1 5.0741 -0.5189 4.7284 34 1 4.4110 2.4332 4.8002 35 1 4.2556 3.0913 3.1537 36 1 4.5293 4.0349 7.9243 37 1 7.1418 5.5380 3.3870 38 1 5.9093 4.7877 2.2385 39 1 4.0382 5.4324 3.8256 40 1 5.2707 6.1824 4.9743 41 1 4.9312 1.2191 0.9106 42 1 5.0777 -0.5574 0.9027 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594804589.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:39 Heat of formation + Delta-G solvation = -55.267846 kcal Electronic energy + Delta-G solvation = -24952.232900 eV Core-core repulsion = 21444.869062 eV Total energy + Delta-G solvation = -3507.363838 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.85469 -38.54717 -37.95338 -37.50545 -36.72323 -34.35234 -34.09142 -32.68366 -29.79614 -28.59808 -27.49423 -25.44132 -23.38797 -22.98540 -21.64591 -20.90141 -19.73677 -18.65663 -18.32497 -18.13003 -16.97327 -16.76335 -16.58105 -15.92421 -15.69400 -15.65397 -15.35755 -14.99645 -14.86191 -14.40354 -14.32535 -14.01111 -13.73458 -13.62603 -13.39733 -13.18898 -13.09991 -12.86842 -12.81381 -12.76745 -12.62150 -12.44179 -12.35261 -12.21168 -11.97767 -11.92233 -11.76204 -11.55441 -11.38043 -11.18190 -10.82577 -10.56122 -10.08105 -9.66708 -8.20105 -6.33582 -0.47069 1.37801 1.40836 1.50812 1.83209 1.94225 2.03914 2.40615 3.04978 3.09180 3.16128 3.38523 3.45652 3.68149 3.94397 3.96735 4.07023 4.22305 4.28734 4.36142 4.45723 4.53167 4.56925 4.62146 4.66097 4.82800 4.87734 4.94855 4.97545 4.98553 5.01764 5.07924 5.21780 5.24083 5.26691 5.40122 5.48244 5.55008 5.58813 5.73341 5.81046 6.23341 6.72843 6.73197 7.39411 8.87845 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.017852 B = 0.004501 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.078527 B = 6219.676726 C = 6422.953964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.238 3.762 3 C -0.018 4.018 4 C -0.101 4.101 5 H 0.073 0.927 6 C -0.111 4.111 7 C -0.135 4.135 8 C 0.115 3.885 9 N -1.002 6.002 10 S 2.621 3.379 11 O -0.985 6.985 12 O -0.992 6.992 13 C -0.554 4.554 14 C 0.010 3.990 15 C -0.529 4.529 16 H 0.049 0.951 17 C 0.043 3.957 18 N -0.894 5.894 19 Si 0.932 3.068 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.274 1.274 23 C -0.192 4.192 24 C -0.146 4.146 25 C 0.118 3.882 26 H 0.142 0.858 27 H 0.150 0.850 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.117 0.883 35 H 0.128 0.872 36 H 0.264 0.736 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.933 -10.396 -12.960 17.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.078 4.078 3 C -0.058 4.058 4 C -0.122 4.122 5 H 0.091 0.909 6 C -0.148 4.148 7 C -0.174 4.174 8 C -0.010 4.010 9 N -0.840 5.840 10 S 2.719 3.281 11 O -0.976 6.976 12 O -0.983 6.983 13 C -0.686 4.686 14 C 0.008 3.992 15 C -0.567 4.567 16 H 0.067 0.933 17 C -0.160 4.160 18 N -0.530 5.530 19 Si 0.757 3.243 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.199 1.199 23 C -0.230 4.230 24 C -0.185 4.185 25 C -0.007 4.007 26 H 0.160 0.840 27 H 0.167 0.833 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.116 0.884 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.804 -10.502 -12.851 17.278 hybrid contribution 0.123 0.627 1.638 1.758 sum -4.681 -9.875 -11.213 15.657 Atomic orbital electron populations 1.81278 1.15375 1.11516 1.10665 1.29814 0.95854 0.90997 0.91158 1.19633 0.78960 1.09267 0.97985 1.21542 0.95714 1.00158 0.94830 0.90882 1.21594 1.00482 0.98514 0.94219 1.22003 0.94334 1.02653 0.98415 1.21637 0.95857 0.90642 0.92826 1.57760 1.68902 1.37954 1.19390 1.04484 0.75785 0.74772 0.73030 1.93452 1.73001 1.82820 1.48298 1.93474 1.70022 1.76576 1.58188 1.29938 1.14142 1.13995 1.10477 1.18435 0.98162 0.87247 0.95363 1.20740 0.93209 1.51802 0.90922 0.93320 1.25485 0.96258 0.93512 1.00732 1.70040 1.12167 1.48510 1.22277 0.85943 0.79929 0.78602 0.79785 1.19412 1.20287 1.19894 1.23220 0.99160 1.05505 0.95067 1.22536 0.95496 0.99640 1.00875 1.21725 0.92846 1.05584 0.80538 0.83980 0.83272 0.92422 0.88695 0.92973 0.89346 0.88813 0.91510 0.86510 0.85336 0.92677 0.89888 0.87883 0.89566 0.91697 0.88434 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.32 18.54 20.01 0.37 -11.95 16 2 C 0.24 3.76 14.39 89.44 1.29 5.04 16 3 C -0.02 -0.12 5.19 28.79 0.15 0.03 16 4 C -0.10 -1.27 2.31 -10.71 -0.02 -1.29 16 5 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 6 C -0.11 -1.47 5.00 30.62 0.15 -1.31 16 7 C -0.13 -2.50 6.10 30.82 0.19 -2.31 16 8 C 0.12 2.67 6.34 86.51 0.55 3.22 16 9 N -1.00 -25.69 3.21 -512.29 -1.65 -27.33 16 10 S 2.62 99.52 5.17 -56.49 -0.29 99.23 16 11 O -0.99 -38.88 16.73 -127.65 -2.13 -41.01 16 12 O -0.99 -46.74 16.27 -127.65 -2.08 -48.82 16 13 C -0.55 -22.19 6.03 71.98 0.43 -21.76 16 14 C 0.01 0.48 1.25 -52.93 -0.07 0.41 16 15 C -0.53 -29.03 8.07 25.60 0.21 -28.82 16 16 H 0.05 2.77 7.82 -2.91 -0.02 2.75 16 17 C 0.04 2.33 5.42 84.66 0.46 2.79 16 18 N -0.89 -49.14 13.06 21.45 0.28 -48.86 16 19 Si 0.93 43.83 29.55 68.60 2.03 45.86 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 23 C -0.19 -7.95 9.96 30.59 0.30 -7.64 16 24 C -0.15 -6.42 9.72 30.59 0.30 -6.12 16 25 C 0.12 1.89 5.60 86.36 0.48 2.37 16 26 H 0.14 0.26 8.14 -2.38 -0.02 0.24 16 27 H 0.15 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.06 0.85 7.35 -2.39 -0.02 0.83 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.93 7.09 -2.39 -0.02 1.91 16 34 H 0.12 5.12 8.06 -2.39 -0.02 5.10 16 35 H 0.13 4.12 8.09 -2.39 -0.02 4.10 16 36 H 0.26 13.84 8.32 -92.71 -0.77 13.07 16 37 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 38 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 39 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 40 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 41 H 0.10 1.56 7.10 -2.39 -0.02 1.54 16 42 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -75.83 360.75 1.95 -73.88 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.00 Total: 14.41 kcal Atomic # 6 Polarization: -59.82 SS G_CDS: 4.42 Total: -55.40 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -1.00 Total: -88.14 kcal Atomic # 8 Polarization: -85.62 SS G_CDS: -4.21 Total: -89.83 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 99.52 SS G_CDS: -0.29 Total: 99.23 kcal Total: -75.83 1.95 -73.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594804589.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.610 kcal (2) G-P(sol) polarization free energy of solvation -75.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds