Wall clock time and date at job start Fri Apr 10 2020 22:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47377 * 14.92330 * 3 2 1 5 5 H 1.08995 * 109.49810 * 55.06428 * 4 3 2 6 6 C 1.53040 * 109.49797 * 295.00116 * 4 3 2 7 7 C 1.53036 * 109.53839 * 178.68418 * 6 4 3 8 8 C 1.53194 * 109.31476 * 61.36695 * 7 6 4 9 9 N 1.46926 * 108.77070 * 305.36018 * 8 7 6 10 10 S 1.65596 * 120.63204 * 233.60979 * 9 8 7 11 11 O 1.42102 * 104.27766 * 206.07697 * 10 9 8 12 12 O 1.42101 * 104.27890 * 333.92966 * 10 9 8 13 13 C 1.81398 * 104.44936 * 90.00412 * 10 9 8 14 14 C 1.53002 * 109.46882 * 173.99451 * 13 10 9 15 15 C 1.50701 * 115.54822 * 65.20186 * 14 13 10 16 16 H 1.07998 * 119.99822 * 264.77695 * 15 14 13 17 17 C 1.37879 * 120.00167 * 84.78536 * 15 14 13 18 18 N 1.31517 * 119.99890 * 352.22466 * 17 15 14 19 19 Si 1.86796 * 120.00290 * 172.22736 * 17 15 14 20 20 H 1.48501 * 109.47056 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47441 * 119.99569 * 19 17 15 22 22 H 1.48496 * 109.47331 * 239.99948 * 19 17 15 23 23 C 1.52998 * 117.50459 * 279.52903 * 14 13 10 24 24 C 1.52998 * 117.49775 * 210.86778 * 14 13 10 25 25 C 1.46928 * 118.73712 * 53.61827 * 9 8 7 26 26 H 1.09003 * 109.47274 * 134.92294 * 3 2 1 27 27 H 1.09004 * 109.47256 * 254.92147 * 3 2 1 28 28 H 1.09004 * 109.45515 * 298.70345 * 6 4 3 29 29 H 1.08998 * 109.46155 * 58.66013 * 6 4 3 30 30 H 1.09007 * 109.49685 * 181.31284 * 7 6 4 31 31 H 1.09004 * 109.49933 * 301.37924 * 7 6 4 32 32 H 1.08993 * 109.58986 * 65.15223 * 8 7 6 33 33 H 1.09003 * 109.58391 * 185.44023 * 8 7 6 34 34 H 1.08995 * 109.47135 * 293.99344 * 13 10 9 35 35 H 1.08992 * 109.47163 * 53.99790 * 13 10 9 36 36 H 0.96994 * 119.99996 * 185.02478 * 18 17 15 37 37 H 1.09007 * 117.49374 * 0.02562 * 23 14 13 38 38 H 1.08996 * 117.50393 * 145.01916 * 23 14 13 39 39 H 1.09005 * 117.49676 * 214.98080 * 24 14 13 40 40 H 1.08993 * 117.49918 * 359.97438 * 24 14 13 41 41 H 1.09000 * 109.58549 * 186.60076 * 25 9 8 42 42 H 1.08995 * 109.59548 * 66.17049 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.3929 -0.3715 5 1 2.6853 -1.6972 -1.3242 6 6 2.7146 -2.3916 0.7155 7 6 3.1965 -3.7917 0.3290 8 6 4.7244 -3.7892 0.2187 9 7 5.1291 -2.7318 -0.7178 10 16 6.1114 -3.0761 -2.0058 11 8 6.7677 -1.8468 -2.2843 12 8 6.8447 -4.2205 -1.5912 13 6 4.9668 -3.5046 -3.3462 14 6 5.7524 -3.7009 -4.6444 15 6 6.7095 -4.8648 -4.6552 16 1 7.7507 -4.7100 -4.4135 17 6 6.2561 -6.1273 -4.9737 18 7 4.9673 -6.3462 -5.1181 19 14 7.4722 -7.5271 -5.2000 20 1 8.8524 -7.0235 -4.9838 21 1 7.1786 -8.6017 -4.2180 22 1 7.3525 -8.0690 -6.5774 23 6 6.1563 -2.4469 -5.4223 24 6 5.0460 -3.3549 -5.9567 25 6 4.6458 -1.3632 -0.4897 26 1 2.9710 0.7265 -0.7277 27 1 2.9712 0.2682 0.9923 28 1 3.1680 -2.1002 1.6630 29 1 1.6295 -2.3966 0.8188 30 1 2.8881 -4.5062 1.0922 31 1 2.7624 -4.0739 -0.6303 32 1 5.1612 -3.5964 1.1985 33 1 5.0658 -4.7566 -0.1497 34 1 4.4428 -4.4269 -3.0956 35 1 4.2434 -2.6999 -3.4774 36 1 4.6425 -7.2474 -5.2699 37 1 5.8628 -1.4819 -5.0089 38 1 7.1142 -2.4638 -5.9421 39 1 5.2740 -3.9690 -6.8280 40 1 4.0215 -2.9879 -5.8953 41 1 4.9351 -0.7291 -1.3278 42 1 5.0761 -0.9725 0.4323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594804590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:42 Heat of formation + Delta-G solvation = -33.112793 kcal Electronic energy + Delta-G solvation = -24925.263752 eV Core-core repulsion = 21418.860629 eV Total energy + Delta-G solvation = -3506.403123 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.09388 -36.79491 -36.69876 -36.35941 -35.13197 -33.54019 -32.06383 -31.87784 -28.18664 -27.92649 -25.50346 -24.55995 -22.59512 -21.23965 -20.51640 -19.40669 -18.55436 -17.59754 -17.14647 -16.48108 -15.65325 -15.29374 -15.20633 -14.81020 -14.70954 -14.37359 -14.13264 -13.87741 -13.51761 -13.46225 -13.22063 -13.07795 -12.68874 -12.13569 -11.98561 -11.89844 -11.85716 -11.52886 -11.31282 -11.26005 -11.16148 -11.07142 -11.02386 -10.96717 -10.62716 -10.59337 -10.51022 -10.43119 -10.12533 -9.71768 -8.98321 -8.86382 -8.59253 -8.09375 -6.16162 -4.26671 0.99036 2.55060 2.60219 3.26087 3.26998 3.35185 3.42210 3.75140 4.35567 4.41236 4.52831 4.55152 4.71915 4.87268 5.01961 5.03645 5.11701 5.11911 5.17552 5.22703 5.32624 5.38809 5.48923 5.64177 5.69234 5.77634 5.84375 5.90759 5.94513 5.99621 6.19671 6.25040 6.28362 6.37198 6.59156 6.69252 6.78748 6.97282 7.22910 7.36772 7.37215 7.78556 8.18189 8.79239 9.44731 10.91515 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.004447 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.461008 B = 6295.475907 C = 6511.638276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.210 3.790 3 C -0.024 4.024 4 C -0.105 4.105 5 H 0.087 0.913 6 C -0.113 4.113 7 C -0.137 4.137 8 C 0.121 3.879 9 N -1.010 6.010 10 S 2.605 3.395 11 O -0.970 6.970 12 O -0.947 6.947 13 C -0.553 4.553 14 C 0.042 3.958 15 C -0.515 4.515 16 H 0.069 0.931 17 C 0.082 3.918 18 N -0.874 5.874 19 Si 0.891 3.109 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.282 1.282 23 C -0.208 4.208 24 C -0.142 4.142 25 C 0.129 3.871 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.096 0.904 36 H 0.263 0.737 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.942 9.299 11.141 15.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.107 4.107 3 C -0.065 4.065 4 C -0.126 4.126 5 H 0.105 0.895 6 C -0.151 4.151 7 C -0.176 4.176 8 C -0.005 4.005 9 N -0.845 5.845 10 S 2.704 3.296 11 O -0.961 6.961 12 O -0.937 6.937 13 C -0.686 4.686 14 C 0.040 3.960 15 C -0.553 4.553 16 H 0.087 0.913 17 C -0.123 4.123 18 N -0.510 5.510 19 Si 0.718 3.282 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.208 1.208 23 C -0.245 4.245 24 C -0.181 4.181 25 C 0.003 3.997 26 H 0.133 0.867 27 H 0.130 0.870 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.151 0.849 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.798 9.197 11.106 15.197 hybrid contribution 0.051 -0.979 -0.380 1.052 sum -4.747 8.218 10.726 14.322 Atomic orbital electron populations 1.81242 1.13119 1.08571 1.08933 1.29166 0.95300 0.93122 0.93140 1.19374 0.81693 0.99709 1.05725 1.21629 0.97047 0.92955 1.01002 0.89466 1.21580 1.00591 0.94878 0.98055 1.21947 0.96186 0.96813 1.02689 1.21362 0.94242 0.91082 0.93781 1.58180 1.69018 1.14001 1.43273 1.05323 0.75721 0.74057 0.74543 1.93485 1.72107 1.45397 1.85093 1.93534 1.68179 1.51865 1.80115 1.30025 1.13577 1.09769 1.15200 1.18302 0.97261 0.93805 0.86641 1.20564 0.94479 0.91106 1.49110 0.91317 1.24952 0.95209 0.98693 0.93443 1.69985 1.12634 1.21219 1.47157 0.86528 0.82003 0.81921 0.77710 1.19188 1.20623 1.20838 1.23193 0.99929 0.94191 1.07179 1.22549 0.94099 1.01783 0.99649 1.21309 0.91644 0.83367 1.03425 0.86746 0.86997 0.91232 0.92079 0.90730 0.91048 0.91423 0.88750 0.84908 0.88507 0.92774 0.90684 0.89543 0.89622 0.91565 0.88726 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.57 18.54 42.15 0.78 -4.79 16 2 C 0.21 1.93 14.38 -20.76 -0.30 1.64 16 3 C -0.02 -0.13 5.19 -29.52 -0.15 -0.29 16 4 C -0.10 -0.84 2.31 -90.50 -0.21 -1.05 16 5 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 6 C -0.11 -0.93 5.00 -26.69 -0.13 -1.06 16 7 C -0.14 -1.36 6.08 -26.61 -0.16 -1.52 16 8 C 0.12 1.45 6.31 -3.71 -0.02 1.43 16 9 N -1.01 -13.72 3.22 -113.52 -0.37 -14.09 16 10 S 2.61 49.64 5.15 -107.50 -0.55 49.09 16 11 O -0.97 -19.77 16.72 -57.54 -0.96 -20.73 16 12 O -0.95 -21.56 16.39 -57.54 -0.94 -22.50 16 13 C -0.55 -11.06 6.03 37.16 0.22 -10.84 16 14 C 0.04 1.00 1.32 -155.66 -0.21 0.79 16 15 C -0.52 -13.82 8.17 -34.44 -0.28 -14.10 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C 0.08 2.20 5.38 -17.82 -0.10 2.10 16 18 N -0.87 -23.68 12.98 55.43 0.72 -22.96 16 19 Si 0.89 21.09 29.55 -169.99 -5.02 16.06 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.21 -4.41 9.96 -26.70 -0.27 -4.68 16 24 C -0.14 -3.15 9.49 -26.70 -0.25 -3.41 16 25 C 0.13 1.27 5.60 -3.71 -0.02 1.25 16 26 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.52 7.34 -51.93 -0.38 0.14 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.30 7.11 -51.93 -0.37 0.93 16 34 H 0.13 2.80 8.14 -51.93 -0.42 2.38 16 35 H 0.10 1.61 8.09 -51.93 -0.42 1.19 16 36 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 37 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 39 H 0.09 2.03 8.14 -51.93 -0.42 1.60 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.09 0.93 7.10 -51.93 -0.37 0.57 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -33.72 360.72 -9.37 -43.09 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.58 Total: 1.12 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: -1.88 Total: -29.72 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 1.14 Total: -41.84 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -1.91 Total: -43.23 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 49.64 SS G_CDS: -0.55 Total: 49.09 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.72 -9.37 -43.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594804590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.974 kcal (2) G-P(sol) polarization free energy of solvation -33.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds