Wall clock time and date at job start Fri Apr 10 2020 22:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47377 * 14.92330 * 3 2 1 5 5 H 1.08995 * 109.49810 * 55.06428 * 4 3 2 6 6 C 1.53040 * 109.49797 * 295.00116 * 4 3 2 7 7 C 1.53036 * 109.53839 * 178.68418 * 6 4 3 8 8 C 1.53194 * 109.31476 * 61.36695 * 7 6 4 9 9 N 1.46926 * 108.77070 * 305.36018 * 8 7 6 10 10 S 1.65596 * 120.63204 * 233.60979 * 9 8 7 11 11 O 1.42102 * 104.27766 * 206.07697 * 10 9 8 12 12 O 1.42101 * 104.27890 * 333.92966 * 10 9 8 13 13 C 1.81398 * 104.44936 * 90.00412 * 10 9 8 14 14 C 1.53002 * 109.46882 * 173.99451 * 13 10 9 15 15 C 1.50701 * 115.54822 * 65.20186 * 14 13 10 16 16 H 1.07998 * 119.99822 * 264.77695 * 15 14 13 17 17 C 1.37879 * 120.00167 * 84.78536 * 15 14 13 18 18 N 1.31517 * 119.99890 * 352.22466 * 17 15 14 19 19 Si 1.86796 * 120.00290 * 172.22736 * 17 15 14 20 20 H 1.48501 * 109.47056 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47441 * 119.99569 * 19 17 15 22 22 H 1.48496 * 109.47331 * 239.99948 * 19 17 15 23 23 C 1.52998 * 117.50459 * 279.52903 * 14 13 10 24 24 C 1.52998 * 117.49775 * 210.86778 * 14 13 10 25 25 C 1.46928 * 118.73712 * 53.61827 * 9 8 7 26 26 H 1.09003 * 109.47274 * 134.92294 * 3 2 1 27 27 H 1.09004 * 109.47256 * 254.92147 * 3 2 1 28 28 H 1.09004 * 109.45515 * 298.70345 * 6 4 3 29 29 H 1.08998 * 109.46155 * 58.66013 * 6 4 3 30 30 H 1.09007 * 109.49685 * 181.31284 * 7 6 4 31 31 H 1.09004 * 109.49933 * 301.37924 * 7 6 4 32 32 H 1.08993 * 109.58986 * 65.15223 * 8 7 6 33 33 H 1.09003 * 109.58391 * 185.44023 * 8 7 6 34 34 H 1.08995 * 109.47135 * 293.99344 * 13 10 9 35 35 H 1.08992 * 109.47163 * 53.99790 * 13 10 9 36 36 H 0.96994 * 119.99996 * 185.02478 * 18 17 15 37 37 H 1.09007 * 117.49374 * 0.02562 * 23 14 13 38 38 H 1.08996 * 117.50393 * 145.01916 * 23 14 13 39 39 H 1.09005 * 117.49676 * 214.98080 * 24 14 13 40 40 H 1.08993 * 117.49918 * 359.97438 * 24 14 13 41 41 H 1.09000 * 109.58549 * 186.60076 * 25 9 8 42 42 H 1.08995 * 109.59548 * 66.17049 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.3929 -0.3715 5 1 2.6853 -1.6972 -1.3242 6 6 2.7146 -2.3916 0.7155 7 6 3.1965 -3.7917 0.3290 8 6 4.7244 -3.7892 0.2187 9 7 5.1291 -2.7318 -0.7178 10 16 6.1114 -3.0761 -2.0058 11 8 6.7677 -1.8468 -2.2843 12 8 6.8447 -4.2205 -1.5912 13 6 4.9668 -3.5046 -3.3462 14 6 5.7524 -3.7009 -4.6444 15 6 6.7095 -4.8648 -4.6552 16 1 7.7507 -4.7100 -4.4135 17 6 6.2561 -6.1273 -4.9737 18 7 4.9673 -6.3462 -5.1181 19 14 7.4722 -7.5271 -5.2000 20 1 8.8524 -7.0235 -4.9838 21 1 7.1786 -8.6017 -4.2180 22 1 7.3525 -8.0690 -6.5774 23 6 6.1563 -2.4469 -5.4223 24 6 5.0460 -3.3549 -5.9567 25 6 4.6458 -1.3632 -0.4897 26 1 2.9710 0.7265 -0.7277 27 1 2.9712 0.2682 0.9923 28 1 3.1680 -2.1002 1.6630 29 1 1.6295 -2.3966 0.8188 30 1 2.8881 -4.5062 1.0922 31 1 2.7624 -4.0739 -0.6303 32 1 5.1612 -3.5964 1.1985 33 1 5.0658 -4.7566 -0.1497 34 1 4.4428 -4.4269 -3.0956 35 1 4.2434 -2.6999 -3.4774 36 1 4.6425 -7.2474 -5.2699 37 1 5.8628 -1.4819 -5.0089 38 1 7.1142 -2.4638 -5.9421 39 1 5.2740 -3.9690 -6.8280 40 1 4.0215 -2.9879 -5.8953 41 1 4.9351 -0.7291 -1.3278 42 1 5.0761 -0.9725 0.4323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594804590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:41 Heat of formation + Delta-G solvation = -55.171422 kcal Electronic energy + Delta-G solvation = -24926.220286 eV Core-core repulsion = 21418.860629 eV Total energy + Delta-G solvation = -3507.359657 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.86447 -38.54782 -37.95520 -37.50785 -36.72722 -34.35349 -34.08297 -32.70267 -29.81073 -28.59959 -27.49967 -25.45100 -23.38076 -22.97850 -21.65295 -20.89651 -19.73695 -18.66003 -18.31868 -18.12756 -16.97474 -16.78724 -16.57865 -15.92543 -15.69699 -15.65863 -15.35827 -14.99479 -14.86155 -14.40386 -14.32974 -14.01419 -13.75138 -13.64555 -13.39585 -13.17567 -13.06928 -12.87138 -12.85183 -12.76554 -12.62575 -12.43433 -12.35422 -12.20899 -11.97408 -11.91678 -11.75270 -11.55008 -11.37783 -11.17955 -10.86379 -10.54638 -10.08129 -9.66425 -8.19517 -6.33852 -0.47691 1.36535 1.40083 1.51097 1.83315 1.94349 2.03802 2.39493 3.04142 3.08374 3.16160 3.38714 3.45230 3.68206 3.94352 3.96644 4.07305 4.22141 4.28799 4.36021 4.46127 4.53379 4.57127 4.61686 4.66419 4.82893 4.87021 4.95265 4.97928 4.99450 5.01976 5.08154 5.22516 5.24454 5.26857 5.40297 5.49508 5.55203 5.59956 5.72225 5.80827 6.23473 6.72926 6.72948 7.38599 8.87615 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.004447 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.461008 B = 6295.475907 C = 6511.638276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.238 3.762 3 C -0.019 4.019 4 C -0.101 4.101 5 H 0.073 0.927 6 C -0.111 4.111 7 C -0.135 4.135 8 C 0.115 3.885 9 N -1.001 6.001 10 S 2.622 3.378 11 O -0.985 6.985 12 O -0.993 6.993 13 C -0.554 4.554 14 C 0.009 3.991 15 C -0.532 4.532 16 H 0.049 0.951 17 C 0.042 3.958 18 N -0.894 5.894 19 Si 0.934 3.066 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.273 1.273 23 C -0.192 4.192 24 C -0.143 4.143 25 C 0.117 3.883 26 H 0.142 0.858 27 H 0.150 0.850 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.129 0.871 36 H 0.264 0.736 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.141 11.159 12.734 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.078 4.078 3 C -0.059 4.059 4 C -0.123 4.123 5 H 0.092 0.908 6 C -0.148 4.148 7 C -0.174 4.174 8 C -0.010 4.010 9 N -0.840 5.840 10 S 2.720 3.280 11 O -0.975 6.975 12 O -0.983 6.983 13 C -0.686 4.686 14 C 0.007 3.993 15 C -0.569 4.569 16 H 0.067 0.933 17 C -0.161 4.161 18 N -0.530 5.530 19 Si 0.760 3.240 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.198 1.198 23 C -0.229 4.229 24 C -0.182 4.182 25 C -0.007 4.007 26 H 0.160 0.840 27 H 0.167 0.833 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.133 0.867 35 H 0.148 0.852 36 H 0.074 0.926 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.996 11.059 12.675 17.548 hybrid contribution 0.138 -1.526 -0.826 1.740 sum -4.858 9.533 11.849 15.965 Atomic orbital electron populations 1.81277 1.15377 1.10732 1.11448 1.29811 0.95852 0.91129 0.91028 1.19631 0.78959 0.98550 1.08720 1.21544 0.95696 0.94503 1.00511 0.90848 1.21596 1.00471 0.93547 0.99225 1.21935 0.94373 0.98786 1.02350 1.21546 0.95850 0.89535 0.94070 1.57762 1.68648 1.16154 1.41392 1.04469 0.75762 0.72912 0.74861 1.93452 1.72920 1.45374 1.85733 1.93471 1.70079 1.53846 1.80925 1.29944 1.14088 1.10188 1.14347 1.18437 0.98084 0.94153 0.88617 1.20745 0.94336 0.92800 1.49055 0.93320 1.25520 0.96546 1.00471 0.93540 1.70036 1.13443 1.21621 1.47941 0.85860 0.80182 0.79878 0.78095 1.19560 1.20172 1.19811 1.23244 0.99380 0.94577 1.05747 1.22495 0.95443 1.01945 0.98297 1.21725 0.92832 0.80954 1.05190 0.84001 0.83283 0.88723 0.92427 0.89270 0.92913 0.88877 0.91408 0.86693 0.85238 0.92645 0.87853 0.90008 0.91859 0.89585 0.88433 0.87507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.24 18.54 20.00 0.37 -11.87 16 2 C 0.24 3.72 14.38 89.44 1.29 5.01 16 3 C -0.02 -0.11 5.19 28.79 0.15 0.03 16 4 C -0.10 -1.24 2.31 -10.71 -0.02 -1.26 16 5 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 6 C -0.11 -1.43 5.00 30.62 0.15 -1.28 16 7 C -0.14 -2.43 6.08 30.67 0.19 -2.24 16 8 C 0.11 2.59 6.31 86.36 0.54 3.14 16 9 N -1.00 -25.23 3.22 -513.06 -1.65 -26.89 16 10 S 2.62 98.60 5.15 -56.49 -0.29 98.31 16 11 O -0.98 -38.70 16.72 -127.65 -2.13 -40.84 16 12 O -0.99 -46.22 16.39 -127.65 -2.09 -48.31 16 13 C -0.55 -22.03 6.03 71.98 0.43 -21.59 16 14 C 0.01 0.44 1.32 -52.93 -0.07 0.37 16 15 C -0.53 -29.23 8.17 25.60 0.21 -29.02 16 16 H 0.05 2.79 7.83 -2.91 -0.02 2.76 16 17 C 0.04 2.29 5.38 84.65 0.46 2.75 16 18 N -0.89 -49.30 12.98 21.45 0.28 -49.02 16 19 Si 0.93 43.85 29.55 68.60 2.03 45.88 16 20 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 23 C -0.19 -7.99 9.96 30.62 0.30 -7.68 16 24 C -0.14 -6.32 9.49 30.62 0.29 -6.03 16 25 C 0.12 1.85 5.60 86.36 0.48 2.34 16 26 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.15 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.06 0.83 7.34 -2.39 -0.02 0.81 16 30 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.05 1.13 8.14 -2.38 -0.02 1.12 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 1.90 7.11 -2.39 -0.02 1.88 16 34 H 0.11 4.97 8.14 -2.39 -0.02 4.95 16 35 H 0.13 4.10 8.09 -2.39 -0.02 4.08 16 36 H 0.26 13.86 8.32 -92.71 -0.77 13.08 16 37 H 0.10 3.66 8.14 -2.38 -0.02 3.64 16 38 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 39 H 0.06 3.04 8.14 -2.38 -0.02 3.02 16 40 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.10 1.54 7.10 -2.39 -0.02 1.52 16 42 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -76.02 360.72 1.91 -74.10 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 1.00 Total: 14.12 kcal Atomic # 6 Polarization: -59.89 SS G_CDS: 4.40 Total: -55.49 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -1.00 Total: -87.78 kcal Atomic # 8 Polarization: -84.92 SS G_CDS: -4.23 Total: -89.15 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 98.60 SS G_CDS: -0.29 Total: 98.31 kcal Total: -76.02 1.91 -74.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594804590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.931 kcal (2) G-P(sol) polarization free energy of solvation -76.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds