Wall clock time and date at job start Fri Apr 10 2020 22:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38237 * 119.99943 * 2 1 4 4 C 1.38241 * 119.99687 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.99917 * 179.97438 * 4 3 2 6 6 C 1.38232 * 119.99956 * 359.95620 * 4 3 2 7 7 C 1.38233 * 120.00107 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.99961 * 179.97438 * 7 6 4 9 9 N 1.46493 * 109.47059 * 90.00125 * 8 7 6 10 10 S 1.65601 * 120.00344 * 164.99941 * 9 8 7 11 11 O 1.42104 * 106.40162 * 311.46436 * 10 9 8 12 12 O 1.42097 * 106.40701 * 178.53889 * 10 9 8 13 13 N 1.65608 * 107.21642 * 64.99766 * 10 9 8 14 14 C 1.46497 * 120.00164 * 270.00708 * 13 10 9 15 15 C 1.46499 * 119.99720 * 90.00318 * 13 10 9 16 16 C 1.50697 * 109.47343 * 95.00167 * 15 13 10 17 17 H 1.08007 * 119.99835 * 359.97438 * 16 15 13 18 18 C 1.37875 * 120.00180 * 180.02562 * 16 15 13 19 19 N 1.31519 * 119.99823 * 179.97438 * 18 16 15 20 20 Si 1.86792 * 120.00187 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47278 * 89.99887 * 20 18 16 22 22 H 1.48494 * 109.47450 * 210.00327 * 20 18 16 23 23 H 1.48500 * 109.47151 * 330.00213 * 20 18 16 24 24 C 1.38233 * 119.99822 * 180.23736 * 2 1 3 25 25 H 1.09000 * 109.46911 * 89.99077 * 1 2 3 26 26 H 1.08996 * 109.47365 * 209.99815 * 1 2 3 27 27 H 1.09001 * 109.46932 * 329.99644 * 1 2 3 28 28 H 1.07995 * 120.00051 * 0.02562 * 3 2 1 29 29 H 1.09004 * 109.47136 * 269.97680 * 5 4 3 30 30 H 1.09006 * 109.47182 * 29.97313 * 5 4 3 31 31 H 1.08996 * 109.47171 * 149.97584 * 5 4 3 32 32 H 1.07999 * 119.99544 * 180.02562 * 6 4 3 33 33 H 1.08997 * 109.47146 * 329.99922 * 8 7 6 34 34 H 1.09001 * 109.47292 * 210.00311 * 8 7 6 35 35 H 0.97009 * 120.00112 * 345.00109 * 9 8 7 36 36 H 1.08999 * 109.47289 * 89.99599 * 14 13 10 37 37 H 1.09000 * 109.47051 * 210.00377 * 14 13 10 38 38 H 1.09006 * 109.47040 * 329.99513 * 14 13 10 39 39 H 1.09000 * 109.47068 * 215.00148 * 15 13 10 40 40 H 1.09001 * 109.47179 * 334.99788 * 15 13 10 41 41 H 0.97002 * 119.99947 * 179.97438 * 19 18 16 42 42 H 1.08003 * 120.00547 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5021 -0.0011 6 6 4.2717 -0.0001 -0.0002 7 6 3.5805 -1.1972 0.0002 8 6 4.3340 -2.5023 0.0001 9 7 4.5786 -2.9251 1.3812 10 16 5.0483 -4.4808 1.7001 11 8 4.1567 -5.3240 0.9836 12 8 5.2350 -4.5633 3.1063 13 7 6.5420 -4.6917 1.0168 14 6 6.6553 -5.1710 -0.3629 15 6 7.7500 -4.3989 1.7921 16 6 8.2590 -5.6671 2.4274 17 1 7.7346 -6.5981 2.2697 18 6 9.3932 -5.6388 3.2106 19 7 9.8370 -6.7455 3.7655 20 14 10.2996 -4.0285 3.4838 21 1 9.7529 -3.3506 4.6867 22 1 11.7454 -4.3020 3.6840 23 1 10.1211 -3.1526 2.2980 24 6 2.1981 -1.1971 -0.0050 25 1 -0.3633 0.0002 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6582 2.1324 0.0004 29 1 4.5158 2.8164 -1.0290 30 1 3.7450 3.2621 0.5124 31 1 5.2865 2.3720 0.5127 32 1 5.3517 0.0000 -0.0002 33 1 5.2862 -2.3721 -0.5142 34 1 3.7447 -3.2620 -0.5135 35 1 4.4655 -2.2938 2.1090 36 1 6.6655 -4.3198 -1.0436 37 1 7.5794 -5.7378 -0.4759 38 1 5.8051 -5.8123 -0.5957 39 1 8.5154 -3.9908 1.1319 40 1 7.5155 -3.6718 2.5695 41 1 10.6353 -6.7257 4.3162 42 1 1.6582 -2.1325 -0.0093 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594839079.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:44 Heat of formation + Delta-G solvation = -60.392254 kcal Electronic energy + Delta-G solvation = -23877.661696 eV Core-core repulsion = 20370.075647 eV Total energy + Delta-G solvation = -3507.586049 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.87351 -36.70140 -35.70707 -35.51549 -35.22007 -33.74974 -32.38367 -31.75554 -28.39800 -27.71576 -26.91238 -25.83298 -25.14593 -21.92703 -21.00601 -20.95110 -19.00147 -17.36487 -16.97677 -16.76314 -16.43732 -16.09256 -15.90082 -15.04212 -14.43004 -14.24896 -14.14933 -13.77309 -13.47501 -13.46660 -13.19279 -13.14253 -12.99548 -12.79114 -12.53818 -12.37022 -12.11280 -12.00419 -11.75885 -11.57198 -11.49228 -11.34774 -11.22770 -11.22421 -10.98347 -10.67881 -10.45956 -10.25156 -9.57031 -9.40916 -8.90044 -8.74975 -8.59467 -8.13318 -6.08211 -4.07627 0.93303 1.16532 1.30983 3.26642 3.31751 3.32729 3.36683 3.64153 4.09650 4.38162 4.43189 4.53967 4.54652 4.93089 4.96223 5.05309 5.09019 5.17603 5.23130 5.30325 5.31553 5.36480 5.38644 5.41215 5.55314 5.61136 5.63096 5.88075 5.89580 5.95699 5.98775 6.21358 6.32769 6.34996 6.43832 6.45333 6.70958 6.81397 7.00339 7.13155 7.41423 7.57817 8.48904 8.96644 9.50677 11.05398 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.018108 B = 0.003708 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.941350 B = 7549.496337 C = 8472.060763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.118 4.118 4 C -0.086 4.086 5 C -0.114 4.114 6 C -0.109 4.109 7 C -0.086 4.086 8 C 0.161 3.839 9 N -1.131 6.131 10 S 2.782 3.218 11 O -0.993 6.993 12 O -0.961 6.961 13 N -0.991 5.991 14 C 0.093 3.907 15 C 0.228 3.772 16 C -0.533 4.533 17 H 0.078 0.922 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.873 3.127 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.265 1.265 24 C -0.108 4.108 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.120 0.880 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.125 0.875 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.413 0.587 36 H 0.039 0.961 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.033 0.967 40 H 0.029 0.971 41 H 0.265 0.735 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.235 17.968 -11.248 25.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.137 4.137 4 C -0.086 4.086 5 C -0.171 4.171 6 C -0.128 4.128 7 C -0.087 4.087 8 C 0.035 3.965 9 N -0.890 5.890 10 S 2.790 3.210 11 O -0.976 6.976 12 O -0.944 6.944 13 N -0.832 5.832 14 C -0.054 4.054 15 C 0.104 3.896 16 C -0.572 4.572 17 H 0.096 0.904 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.700 3.300 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.190 1.190 24 C -0.127 4.127 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.138 0.862 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.143 0.857 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.246 0.754 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.543 17.081 -10.812 24.903 hybrid contribution 0.844 1.292 0.373 1.588 sum -13.699 18.373 -10.440 25.184 Atomic orbital electron populations 1.20793 0.91119 1.02861 1.02329 1.19902 0.96101 0.93009 0.99611 1.20920 0.93517 0.97488 1.01744 1.19896 0.93798 0.95303 0.99580 1.20792 1.00033 0.93954 1.02320 1.20997 1.00000 0.91295 1.00515 1.19835 0.93769 0.94483 1.00653 1.20105 0.99278 0.93924 0.83195 1.56341 1.85941 1.33357 1.13333 1.01967 0.72926 0.72827 0.73328 1.93530 1.63975 1.64941 1.75160 1.93653 1.85818 1.85285 1.29673 1.57373 1.23060 1.80077 1.22738 1.21417 1.04137 0.98598 0.81237 1.19431 0.82374 0.97354 0.90419 1.21387 1.10865 0.94865 1.30047 0.90414 1.24877 0.96907 0.96270 0.94965 1.69900 1.23783 1.26880 1.32766 0.86907 0.79360 0.84380 0.79376 1.19803 1.20959 1.18970 1.21014 0.93494 0.97868 1.00308 0.91160 0.91365 0.91618 0.86233 0.91177 0.91624 0.91358 0.85709 0.91000 0.89719 0.75358 0.94219 0.90091 0.91208 0.94876 0.95315 0.92517 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.09 -0.82 5.88 -104.62 -0.62 -1.43 16 3 C -0.12 -1.08 9.36 -39.58 -0.37 -1.45 16 4 C -0.09 -0.81 5.88 -104.63 -0.62 -1.42 16 5 C -0.11 -0.81 10.01 36.00 0.36 -0.45 16 6 C -0.11 -1.13 9.36 -39.59 -0.37 -1.50 16 7 C -0.09 -0.95 5.28 -104.62 -0.55 -1.50 16 8 C 0.16 1.92 6.37 -5.19 -0.03 1.89 16 9 N -1.13 -16.21 6.05 -11.66 -0.07 -16.28 16 10 S 2.78 53.84 6.10 -107.50 -0.66 53.19 16 11 O -0.99 -20.30 16.21 -57.17 -0.93 -21.23 16 12 O -0.96 -22.73 17.11 -57.17 -0.98 -23.71 16 13 N -0.99 -19.80 3.23 -123.05 -0.40 -20.19 16 14 C 0.09 1.52 10.68 59.85 0.64 2.16 16 15 C 0.23 5.33 4.15 -5.20 -0.02 5.31 16 16 C -0.53 -15.23 9.94 -34.44 -0.34 -15.57 16 17 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 19 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 20 Si 0.87 21.06 27.47 -169.99 -4.67 16.40 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 24 C -0.11 -1.15 9.36 -39.58 -0.37 -1.52 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 27 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 34 H 0.08 0.99 7.69 -51.93 -0.40 0.59 16 35 H 0.41 5.41 8.65 -34.47 -0.30 5.11 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 38 H 0.07 1.10 7.02 -51.93 -0.36 0.74 16 39 H 0.03 0.73 7.17 -51.93 -0.37 0.36 16 40 H 0.03 0.67 7.04 -51.93 -0.37 0.31 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 363.64 15.07 5.48 5.48 Total: -1.00 -35.38 363.64 -9.92 -45.30 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.44 Total: 1.85 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -2.03 Total: -13.95 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: 0.31 Total: -63.33 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -1.90 Total: -44.94 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.40 kcal Atomic # 16 Polarization: 53.84 SS G_CDS: -0.66 Total: 53.19 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.38 -9.92 -45.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594839079.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.093 kcal (2) G-P(sol) polarization free energy of solvation -35.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds