Wall clock time and date at job start Fri Apr 10 2020 22:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38237 * 119.99943 * 2 1 4 4 C 1.38241 * 119.99687 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.99917 * 179.97438 * 4 3 2 6 6 C 1.38232 * 119.99956 * 359.95620 * 4 3 2 7 7 C 1.38233 * 120.00107 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.99961 * 179.97438 * 7 6 4 9 9 N 1.46493 * 109.47059 * 90.00125 * 8 7 6 10 10 S 1.65601 * 120.00344 * 164.99941 * 9 8 7 11 11 O 1.42104 * 106.40162 * 311.46436 * 10 9 8 12 12 O 1.42097 * 106.40701 * 178.53889 * 10 9 8 13 13 N 1.65608 * 107.21642 * 64.99766 * 10 9 8 14 14 C 1.46497 * 120.00164 * 270.00708 * 13 10 9 15 15 C 1.46499 * 119.99720 * 90.00318 * 13 10 9 16 16 C 1.50697 * 109.47343 * 95.00167 * 15 13 10 17 17 H 1.08007 * 119.99835 * 359.97438 * 16 15 13 18 18 C 1.37875 * 120.00180 * 180.02562 * 16 15 13 19 19 N 1.31519 * 119.99823 * 179.97438 * 18 16 15 20 20 Si 1.86792 * 120.00187 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47278 * 89.99887 * 20 18 16 22 22 H 1.48494 * 109.47450 * 210.00327 * 20 18 16 23 23 H 1.48500 * 109.47151 * 330.00213 * 20 18 16 24 24 C 1.38233 * 119.99822 * 180.23736 * 2 1 3 25 25 H 1.09000 * 109.46911 * 89.99077 * 1 2 3 26 26 H 1.08996 * 109.47365 * 209.99815 * 1 2 3 27 27 H 1.09001 * 109.46932 * 329.99644 * 1 2 3 28 28 H 1.07995 * 120.00051 * 0.02562 * 3 2 1 29 29 H 1.09004 * 109.47136 * 269.97680 * 5 4 3 30 30 H 1.09006 * 109.47182 * 29.97313 * 5 4 3 31 31 H 1.08996 * 109.47171 * 149.97584 * 5 4 3 32 32 H 1.07999 * 119.99544 * 180.02562 * 6 4 3 33 33 H 1.08997 * 109.47146 * 329.99922 * 8 7 6 34 34 H 1.09001 * 109.47292 * 210.00311 * 8 7 6 35 35 H 0.97009 * 120.00112 * 345.00109 * 9 8 7 36 36 H 1.08999 * 109.47289 * 89.99599 * 14 13 10 37 37 H 1.09000 * 109.47051 * 210.00377 * 14 13 10 38 38 H 1.09006 * 109.47040 * 329.99513 * 14 13 10 39 39 H 1.09000 * 109.47068 * 215.00148 * 15 13 10 40 40 H 1.09001 * 109.47179 * 334.99788 * 15 13 10 41 41 H 0.97002 * 119.99947 * 179.97438 * 19 18 16 42 42 H 1.08003 * 120.00547 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5021 -0.0011 6 6 4.2717 -0.0001 -0.0002 7 6 3.5805 -1.1972 0.0002 8 6 4.3340 -2.5023 0.0001 9 7 4.5786 -2.9251 1.3812 10 16 5.0483 -4.4808 1.7001 11 8 4.1567 -5.3240 0.9836 12 8 5.2350 -4.5633 3.1063 13 7 6.5420 -4.6917 1.0168 14 6 6.6553 -5.1710 -0.3629 15 6 7.7500 -4.3989 1.7921 16 6 8.2590 -5.6671 2.4274 17 1 7.7346 -6.5981 2.2697 18 6 9.3932 -5.6388 3.2106 19 7 9.8370 -6.7455 3.7655 20 14 10.2996 -4.0285 3.4838 21 1 9.7529 -3.3506 4.6867 22 1 11.7454 -4.3020 3.6840 23 1 10.1211 -3.1526 2.2980 24 6 2.1981 -1.1971 -0.0050 25 1 -0.3633 0.0002 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6582 2.1324 0.0004 29 1 4.5158 2.8164 -1.0290 30 1 3.7450 3.2621 0.5124 31 1 5.2865 2.3720 0.5127 32 1 5.3517 0.0000 -0.0002 33 1 5.2862 -2.3721 -0.5142 34 1 3.7447 -3.2620 -0.5135 35 1 4.4655 -2.2938 2.1090 36 1 6.6655 -4.3198 -1.0436 37 1 7.5794 -5.7378 -0.4759 38 1 5.8051 -5.8123 -0.5957 39 1 8.5154 -3.9908 1.1319 40 1 7.5155 -3.6718 2.5695 41 1 10.6353 -6.7257 4.3162 42 1 1.6582 -2.1325 -0.0093 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594839079.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:44 Heat of formation + Delta-G solvation = -85.843752 kcal Electronic energy + Delta-G solvation = -23878.765355 eV Core-core repulsion = 20370.075647 eV Total energy + Delta-G solvation = -3508.689709 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.59457 -38.34683 -37.30989 -36.89460 -36.59061 -34.50503 -34.37829 -32.62922 -30.27498 -28.32262 -27.56034 -26.89882 -26.61198 -23.84168 -21.81142 -21.61582 -20.44624 -19.18226 -18.69601 -18.28005 -17.57499 -17.14582 -16.72184 -16.54482 -16.04478 -15.35813 -15.13347 -14.80729 -14.70700 -14.49732 -14.38280 -14.02926 -13.98400 -13.96465 -13.78714 -13.42194 -13.31921 -13.20726 -13.15814 -13.13051 -12.99074 -12.71150 -12.36810 -12.34488 -12.25443 -11.99519 -11.89741 -11.79876 -11.70213 -10.78325 -10.56345 -9.81132 -9.60680 -9.45007 -8.28792 -6.34977 -0.43318 0.39753 0.45021 1.37383 1.41860 1.50106 2.03203 2.36086 2.58007 2.84379 3.05223 3.39329 3.66216 3.85096 3.94041 4.02186 4.22936 4.32382 4.38335 4.51258 4.54051 4.65797 4.69956 4.72016 4.73625 4.82203 4.83083 4.87850 4.88811 5.01946 5.08220 5.08544 5.26529 5.34955 5.37592 5.48188 5.61948 5.63556 5.70524 5.71677 6.05642 6.11987 6.31068 6.68239 7.28090 8.88928 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.018108 B = 0.003708 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.941350 B = 7549.496337 C = 8472.060763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.123 4.123 4 C -0.092 4.092 5 C -0.113 4.113 6 C -0.120 4.120 7 C -0.096 4.096 8 C 0.155 3.845 9 N -1.113 6.113 10 S 2.798 3.202 11 O -1.009 7.009 12 O -1.011 7.011 13 N -0.998 5.998 14 C 0.084 3.916 15 C 0.235 3.765 16 C -0.545 4.545 17 H 0.026 0.974 18 C 0.005 3.995 19 N -0.950 5.950 20 Si 0.946 3.054 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.226 1.226 24 C -0.126 4.126 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.140 0.860 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.133 0.867 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.421 0.579 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.034 0.966 41 H 0.268 0.732 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.409 21.682 -12.704 28.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.141 4.141 4 C -0.092 4.092 5 C -0.170 4.170 6 C -0.138 4.138 7 C -0.097 4.097 8 C 0.031 3.969 9 N -0.876 5.876 10 S 2.806 3.194 11 O -0.992 6.992 12 O -0.995 6.995 13 N -0.840 5.840 14 C -0.061 4.061 15 C 0.110 3.890 16 C -0.585 4.585 17 H 0.045 0.955 18 C -0.193 4.193 19 N -0.590 5.590 20 Si 0.768 3.232 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.148 1.148 24 C -0.144 4.144 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.158 0.842 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.151 0.849 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.256 0.744 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.052 0.948 41 H 0.077 0.923 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.743 20.790 -12.306 28.302 hybrid contribution 0.760 0.098 0.760 1.080 sum -13.982 20.888 -11.545 27.661 Atomic orbital electron populations 1.20835 0.89620 1.03446 1.03136 1.20201 0.97367 0.92809 0.98940 1.21232 0.93699 0.98191 1.00948 1.20216 0.94219 0.95981 0.98756 1.20830 0.99975 0.93024 1.03134 1.21167 1.00545 0.91390 1.00738 1.19765 0.93886 0.94181 1.01910 1.20345 1.00561 0.94577 0.81462 1.55857 1.85156 1.31582 1.15015 1.01222 0.72662 0.73625 0.71910 1.93502 1.64266 1.66339 1.75096 1.93581 1.86443 1.86520 1.32917 1.57298 1.22049 1.80803 1.23821 1.21670 1.03684 1.00509 0.80229 1.19223 0.84008 0.94672 0.91126 1.21739 1.10746 0.95338 1.30634 0.95521 1.25979 0.98045 1.00805 0.94458 1.70082 1.24758 1.30017 1.34144 0.85751 0.77544 0.79257 0.80690 1.19530 1.20477 1.14842 1.21164 0.93662 0.98487 1.01126 0.90176 0.91471 0.90378 0.84222 0.90191 0.90546 0.91203 0.84913 0.89114 0.89655 0.74371 0.89627 0.91197 0.91051 0.92291 0.94759 0.92350 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.01 71.24 0.71 -0.67 16 2 C -0.09 -1.59 5.88 -19.87 -0.12 -1.71 16 3 C -0.12 -1.92 9.36 22.27 0.21 -1.71 16 4 C -0.09 -1.49 5.88 -19.87 -0.12 -1.61 16 5 C -0.11 -1.28 10.01 71.23 0.71 -0.56 16 6 C -0.12 -2.20 9.36 22.27 0.21 -1.99 16 7 C -0.10 -1.95 5.28 -19.86 -0.10 -2.05 16 8 C 0.16 3.39 6.37 85.64 0.55 3.94 16 9 N -1.11 -30.35 6.05 -190.80 -1.15 -31.50 16 10 S 2.80 107.74 6.10 -56.49 -0.34 107.40 16 11 O -1.01 -41.28 16.21 -128.00 -2.07 -43.35 16 12 O -1.01 -48.76 17.11 -128.00 -2.19 -50.95 16 13 N -1.00 -39.02 3.23 -543.23 -1.75 -40.77 16 14 C 0.08 2.63 10.68 127.77 1.36 4.00 16 15 C 0.23 10.68 4.15 85.63 0.36 11.03 16 16 C -0.55 -31.90 9.94 25.60 0.25 -31.65 16 17 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 18 C 0.00 0.28 5.47 84.65 0.46 0.74 16 19 N -0.95 -60.59 13.96 21.45 0.30 -60.29 16 20 Si 0.95 42.64 27.47 68.60 1.88 44.52 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.23 -8.71 6.54 99.48 0.65 -8.05 16 24 C -0.13 -2.50 9.36 22.27 0.21 -2.29 16 25 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 27 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 28 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 29 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.08 0.70 8.09 -2.38 -0.02 0.68 16 31 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 32 H 0.13 2.15 8.06 -2.91 -0.02 2.12 16 33 H 0.09 1.65 8.09 -2.39 -0.02 1.63 16 34 H 0.09 1.86 7.69 -2.39 -0.02 1.84 16 35 H 0.42 10.47 8.65 -96.74 -0.84 9.63 16 36 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 37 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 38 H 0.07 2.19 7.02 -2.38 -0.02 2.18 16 39 H 0.06 2.40 7.17 -2.39 -0.02 2.39 16 40 H 0.03 1.54 7.04 -2.39 -0.02 1.52 16 41 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 42 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -79.28 363.64 -0.52 -79.79 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.12 Total: 19.69 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: 4.70 Total: -24.53 kcal Atomic # 7 Polarization: -129.95 SS G_CDS: -2.61 Total: -132.56 kcal Atomic # 8 Polarization: -90.04 SS G_CDS: -4.26 Total: -94.31 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.88 Total: 44.52 kcal Atomic # 16 Polarization: 107.74 SS G_CDS: -0.34 Total: 107.40 kcal Total: -79.28 -0.52 -79.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594839079.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.052 kcal (2) G-P(sol) polarization free energy of solvation -79.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds