Wall clock time and date at job start Fri Apr 10 2020 22:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99684 * 2 1 4 4 H 1.48495 * 109.46851 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47062 * 299.99729 * 3 2 1 6 6 H 1.48504 * 109.46990 * 59.99792 * 3 2 1 7 7 C 1.37878 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99339 * 184.85861 * 7 2 1 9 9 C 1.50697 * 120.00338 * 4.86569 * 7 2 1 10 10 C 1.52997 * 115.55387 * 84.80731 * 9 7 2 11 11 O 1.42898 * 109.46767 * 64.96460 * 10 9 7 12 12 C 1.35906 * 117.00045 * 179.97438 * 11 10 9 13 13 C 1.38797 * 120.02425 * 359.97438 * 12 11 10 14 14 C 1.38158 * 120.05178 * 180.02562 * 13 12 11 15 15 C 1.38189 * 120.11244 * 359.72398 * 14 13 12 16 16 C 1.38761 * 120.05388 * 0.55582 * 15 14 13 17 17 O 1.35906 * 120.03000 * 179.71829 * 16 15 14 18 18 C 1.35463 * 118.00165 * 255.53755 * 17 16 15 19 19 N 1.32333 * 119.19543 * 354.78625 * 18 17 16 20 20 C 1.32292 * 120.75654 * 179.76079 * 19 18 17 21 21 C 1.38594 * 119.17524 * 0.50471 * 20 19 18 22 22 C 1.38596 * 118.52786 * 359.75096 * 21 20 19 23 23 N 1.32295 * 119.17277 * 359.97438 * 22 21 20 24 24 C 1.38607 * 120.02683 * 180.02562 * 12 11 10 25 25 C 1.53000 * 117.49636 * 230.48422 * 9 7 2 26 26 C 1.53005 * 117.49265 * 299.14126 * 9 7 2 27 27 H 0.97001 * 120.00521 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47070 * 304.96923 * 10 9 7 29 29 H 1.09003 * 109.47213 * 184.96237 * 10 9 7 30 30 H 1.07997 * 119.96941 * 0.04688 * 13 12 11 31 31 H 1.08003 * 119.93782 * 180.02562 * 14 13 12 32 32 H 1.07998 * 119.97377 * 180.29825 * 15 14 13 33 33 H 1.08003 * 120.41083 * 180.25355 * 20 19 18 34 34 H 1.08004 * 120.73873 * 179.76857 * 21 20 19 35 35 H 1.07996 * 120.41975 * 180.02562 * 22 21 20 36 36 H 1.08000 * 120.05834 * 359.97438 * 24 12 11 37 37 H 1.09001 * 117.49963 * 214.99957 * 25 9 7 38 38 H 1.09001 * 117.49676 * 0.02562 * 25 9 7 39 39 H 1.08995 * 117.50376 * 359.97438 * 26 9 7 40 40 H 1.09004 * 117.49448 * 144.97798 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1956 0.0798 9 6 1.2552 -2.4969 -0.1096 10 6 0.9200 -2.9472 -1.5328 11 8 2.1293 -3.2255 -2.2415 12 6 2.0078 -3.6408 -3.5299 13 6 0.7496 -3.7780 -4.0996 14 6 0.6254 -4.2007 -5.4091 15 6 1.7530 -4.4824 -6.1565 16 6 3.0129 -4.3523 -5.5897 17 8 4.1213 -4.6350 -6.3235 18 6 4.7665 -5.8005 -6.0779 19 7 4.3624 -6.5631 -5.0748 20 6 4.9670 -7.7096 -4.8102 21 6 6.0417 -8.1027 -5.5921 22 6 6.4415 -7.2772 -6.6311 23 7 5.7887 -6.1464 -6.8439 24 6 3.1402 -3.9287 -4.2755 25 6 1.5736 -3.5840 0.9189 26 6 0.2455 -2.8262 0.9918 27 1 -0.4851 0.8400 -0.0004 28 1 0.3727 -2.1558 -2.0449 29 1 0.3062 -3.8471 -1.4942 30 1 -0.1329 -3.5538 -3.5189 31 1 -0.3545 -4.3064 -5.8507 32 1 1.6535 -4.8080 -7.1814 33 1 4.6299 -8.3296 -3.9926 34 1 6.5562 -9.0320 -5.3962 35 1 7.2749 -7.5539 -7.2597 36 1 4.1200 -3.8229 -3.8338 37 1 1.5443 -4.6201 0.5815 38 1 2.3247 -3.3567 1.6753 39 1 0.1236 -2.1009 1.7962 40 1 -0.6576 -3.3635 0.7023 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596254669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:47 Heat of formation + Delta-G solvation = 49.556114 kcal Electronic energy + Delta-G solvation = -24595.173374 eV Core-core repulsion = 20956.911093 eV Total energy + Delta-G solvation = -3638.262281 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.57662 -40.01535 -38.82536 -36.88420 -35.63893 -34.03201 -31.96760 -31.77290 -30.48419 -29.32401 -26.72496 -25.35937 -24.93899 -24.48300 -22.51842 -21.88260 -21.11763 -19.51610 -19.02198 -18.16973 -17.10508 -16.72215 -16.20719 -16.14675 -15.65908 -15.25424 -15.06108 -15.00064 -14.52622 -14.46321 -13.94946 -13.76149 -13.53956 -13.16049 -12.73811 -12.25801 -11.97639 -11.67706 -11.56773 -11.34829 -11.17612 -11.06286 -10.98175 -10.71043 -10.52635 -10.37737 -10.21467 -9.54262 -9.48121 -9.34172 -8.98595 -8.66900 -8.45712 -8.22812 -7.83087 -6.08630 -4.13676 0.72199 0.81537 1.12599 1.63327 2.54190 3.27556 3.36191 3.41679 3.52870 3.72441 3.91777 3.96678 4.32591 4.39048 4.45268 4.82430 4.85835 4.99274 5.19720 5.22138 5.31876 5.32914 5.47149 5.50856 5.64706 5.80248 5.88422 6.04524 6.16556 6.21834 6.36922 6.44459 6.49048 6.52322 6.60500 6.65091 6.72833 6.83511 7.01832 7.23217 7.30529 7.46945 7.85224 7.90738 8.07326 8.38030 8.88526 9.52409 11.00085 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.017041 B = 0.003150 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.694151 B = 8885.472673 C = 8961.447517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.069 3.931 3 Si 0.891 3.109 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.486 4.486 8 H 0.062 0.938 9 C 0.036 3.964 10 C 0.104 3.896 11 O -0.291 6.291 12 C 0.163 3.837 13 C -0.205 4.205 14 C -0.067 4.067 15 C -0.166 4.166 16 C 0.123 3.877 17 O -0.227 6.227 18 C 0.500 3.500 19 N -0.548 5.548 20 C 0.188 3.812 21 C -0.270 4.270 22 C 0.184 3.816 23 N -0.524 5.524 24 C -0.149 4.149 25 C -0.206 4.206 26 C -0.140 4.140 27 H 0.260 0.740 28 H 0.066 0.934 29 H 0.034 0.966 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.173 0.827 34 H 0.151 0.849 35 H 0.177 0.823 36 H 0.131 0.869 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.956 -16.008 -11.523 20.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.524 4.524 8 H 0.081 0.919 9 C 0.035 3.965 10 C 0.030 3.970 11 O -0.203 6.203 12 C 0.115 3.885 13 C -0.224 4.224 14 C -0.085 4.085 15 C -0.185 4.185 16 C 0.081 3.919 17 O -0.127 6.127 18 C 0.199 3.801 19 N -0.276 5.276 20 C 0.022 3.978 21 C -0.293 4.293 22 C 0.018 3.982 23 N -0.249 5.249 24 C -0.168 4.168 25 C -0.243 4.243 26 C -0.177 4.177 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.153 0.847 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.190 0.810 34 H 0.169 0.831 35 H 0.194 0.806 36 H 0.149 0.851 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.488 -14.695 -11.737 19.592 hybrid contribution 0.541 0.120 0.217 0.595 sum 6.029 -14.576 -11.520 19.533 Atomic orbital electron populations 1.70006 1.05837 1.26513 1.49666 1.24994 0.94882 0.99059 0.94475 0.86544 0.80428 0.83569 0.77601 1.19573 1.20869 1.21004 1.20434 0.92943 0.88363 1.50665 0.91940 1.18727 0.99545 0.93778 0.84405 1.22681 0.83202 0.97152 0.93977 1.86228 1.35706 1.78789 1.19566 1.18887 0.92554 0.91531 0.85538 1.21486 0.97219 1.06599 0.97087 1.20701 0.97833 0.96855 0.93155 1.20843 0.90498 1.06178 1.00947 1.18018 0.83665 1.00118 0.90105 1.84426 1.38811 1.31644 1.57842 1.20900 0.87344 0.85782 0.86058 1.68231 1.33146 1.07572 1.18660 1.23084 0.89128 0.89897 0.95734 1.22776 1.01945 1.04210 1.00354 1.23113 0.95223 0.86548 0.93326 1.67572 1.08466 1.19321 1.29587 1.20369 0.98540 1.05270 0.92648 1.23000 1.00259 0.95670 1.05378 1.22523 0.90772 1.01410 1.02998 0.93026 0.91553 0.94802 0.84728 0.85203 0.85681 0.80999 0.83099 0.80617 0.85078 0.91571 0.90168 0.89155 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.47 12.66 55.43 0.70 -23.77 16 2 C 0.07 1.87 5.43 -17.82 -0.10 1.77 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.49 -13.32 8.76 -34.44 -0.30 -13.63 16 8 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 9 C 0.04 0.88 1.68 -155.66 -0.26 0.62 16 10 C 0.10 2.32 4.56 37.16 0.17 2.49 16 11 O -0.29 -6.43 10.06 -19.44 -0.20 -6.63 16 12 C 0.16 3.10 6.68 -39.24 -0.26 2.84 16 13 C -0.21 -3.39 9.04 -39.40 -0.36 -3.75 16 14 C -0.07 -0.94 10.03 -39.63 -0.40 -1.34 16 15 C -0.17 -2.40 9.98 -39.41 -0.39 -2.80 16 16 C 0.12 2.03 5.17 -39.23 -0.20 1.83 16 17 O -0.23 -3.75 10.04 -2.29 -0.02 -3.77 16 18 C 0.50 7.48 8.40 -91.23 -0.77 6.71 16 19 N -0.55 -7.64 9.02 -14.73 -0.13 -7.77 16 20 C 0.19 1.81 11.30 -17.22 -0.19 1.61 16 21 C -0.27 -1.96 10.16 -39.32 -0.40 -2.36 16 22 C 0.18 1.58 11.30 -17.22 -0.19 1.39 16 23 N -0.52 -6.90 10.46 -14.73 -0.15 -7.05 16 24 C -0.15 -2.68 9.40 -39.29 -0.37 -3.05 16 25 C -0.21 -4.49 9.96 -26.69 -0.27 -4.75 16 26 C -0.14 -3.19 9.15 -26.69 -0.24 -3.43 16 27 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.07 1.56 7.66 -51.93 -0.40 1.16 16 29 H 0.03 0.67 7.61 -51.93 -0.40 0.28 16 30 H 0.13 2.14 6.29 -52.49 -0.33 1.81 16 31 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.17 1.12 8.06 -52.48 -0.42 0.69 16 34 H 0.15 0.54 8.06 -52.48 -0.42 0.12 16 35 H 0.18 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.13 2.39 8.06 -52.49 -0.42 1.97 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 39 H 0.09 2.21 8.14 -51.93 -0.42 1.79 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 352.74 15.07 5.32 5.32 Total: -1.00 -31.72 352.74 -8.94 -40.67 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.90 Total: 2.59 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -4.54 Total: -15.85 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.41 Total: -38.59 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -0.22 Total: -10.40 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.72 -8.94 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596254669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.225 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds