Wall clock time and date at job start Fri Apr 10 2020 22:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99684 * 2 1 4 4 H 1.48495 * 109.46851 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47062 * 299.99729 * 3 2 1 6 6 H 1.48504 * 109.46990 * 59.99792 * 3 2 1 7 7 C 1.37878 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99339 * 184.85861 * 7 2 1 9 9 C 1.50697 * 120.00338 * 4.86569 * 7 2 1 10 10 C 1.52997 * 115.55387 * 84.80731 * 9 7 2 11 11 O 1.42898 * 109.46767 * 64.96460 * 10 9 7 12 12 C 1.35906 * 117.00045 * 179.97438 * 11 10 9 13 13 C 1.38797 * 120.02425 * 359.97438 * 12 11 10 14 14 C 1.38158 * 120.05178 * 180.02562 * 13 12 11 15 15 C 1.38189 * 120.11244 * 359.72398 * 14 13 12 16 16 C 1.38761 * 120.05388 * 0.55582 * 15 14 13 17 17 O 1.35906 * 120.03000 * 179.71829 * 16 15 14 18 18 C 1.35463 * 118.00165 * 255.53755 * 17 16 15 19 19 N 1.32333 * 119.19543 * 354.78625 * 18 17 16 20 20 C 1.32292 * 120.75654 * 179.76079 * 19 18 17 21 21 C 1.38594 * 119.17524 * 0.50471 * 20 19 18 22 22 C 1.38596 * 118.52786 * 359.75096 * 21 20 19 23 23 N 1.32295 * 119.17277 * 359.97438 * 22 21 20 24 24 C 1.38607 * 120.02683 * 180.02562 * 12 11 10 25 25 C 1.53000 * 117.49636 * 230.48422 * 9 7 2 26 26 C 1.53005 * 117.49265 * 299.14126 * 9 7 2 27 27 H 0.97001 * 120.00521 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47070 * 304.96923 * 10 9 7 29 29 H 1.09003 * 109.47213 * 184.96237 * 10 9 7 30 30 H 1.07997 * 119.96941 * 0.04688 * 13 12 11 31 31 H 1.08003 * 119.93782 * 180.02562 * 14 13 12 32 32 H 1.07998 * 119.97377 * 180.29825 * 15 14 13 33 33 H 1.08003 * 120.41083 * 180.25355 * 20 19 18 34 34 H 1.08004 * 120.73873 * 179.76857 * 21 20 19 35 35 H 1.07996 * 120.41975 * 180.02562 * 22 21 20 36 36 H 1.08000 * 120.05834 * 359.97438 * 24 12 11 37 37 H 1.09001 * 117.49963 * 214.99957 * 25 9 7 38 38 H 1.09001 * 117.49676 * 0.02562 * 25 9 7 39 39 H 1.08995 * 117.50376 * 359.97438 * 26 9 7 40 40 H 1.09004 * 117.49448 * 144.97798 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1956 0.0798 9 6 1.2552 -2.4969 -0.1096 10 6 0.9200 -2.9472 -1.5328 11 8 2.1293 -3.2255 -2.2415 12 6 2.0078 -3.6408 -3.5299 13 6 0.7496 -3.7780 -4.0996 14 6 0.6254 -4.2007 -5.4091 15 6 1.7530 -4.4824 -6.1565 16 6 3.0129 -4.3523 -5.5897 17 8 4.1213 -4.6350 -6.3235 18 6 4.7665 -5.8005 -6.0779 19 7 4.3624 -6.5631 -5.0748 20 6 4.9670 -7.7096 -4.8102 21 6 6.0417 -8.1027 -5.5921 22 6 6.4415 -7.2772 -6.6311 23 7 5.7887 -6.1464 -6.8439 24 6 3.1402 -3.9287 -4.2755 25 6 1.5736 -3.5840 0.9189 26 6 0.2455 -2.8262 0.9918 27 1 -0.4851 0.8400 -0.0004 28 1 0.3727 -2.1558 -2.0449 29 1 0.3062 -3.8471 -1.4942 30 1 -0.1329 -3.5538 -3.5189 31 1 -0.3545 -4.3064 -5.8507 32 1 1.6535 -4.8080 -7.1814 33 1 4.6299 -8.3296 -3.9926 34 1 6.5562 -9.0320 -5.3962 35 1 7.2749 -7.5539 -7.2597 36 1 4.1200 -3.8229 -3.8338 37 1 1.5443 -4.6201 0.5815 38 1 2.3247 -3.3567 1.6753 39 1 0.1236 -2.1009 1.7962 40 1 -0.6576 -3.3635 0.7023 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596254669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:46 Heat of formation + Delta-G solvation = 29.175568 kcal Electronic energy + Delta-G solvation = -24596.057141 eV Core-core repulsion = 20956.911093 eV Total energy + Delta-G solvation = -3639.146048 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.51365 -41.22087 -40.12817 -38.43232 -37.19310 -34.87072 -34.02992 -32.60320 -31.75891 -30.55527 -28.44284 -27.29349 -25.82106 -25.39935 -23.73433 -23.15302 -22.85271 -21.17716 -20.37291 -19.12842 -18.35639 -18.25434 -17.60307 -17.01479 -16.90764 -16.85964 -16.49786 -16.31539 -15.93633 -15.52947 -15.47790 -14.84607 -14.69691 -14.40185 -14.29755 -13.63416 -13.51177 -13.31098 -13.06675 -12.88707 -12.68255 -12.44257 -12.17812 -12.08692 -12.05580 -12.03455 -11.92098 -11.37015 -10.92566 -10.45377 -10.35991 -10.18278 -10.08352 -9.85464 -9.21697 -8.16010 -6.26006 -0.14460 -0.01195 0.08662 0.36921 1.35719 1.39339 1.48541 1.49881 2.29271 2.40384 2.67174 2.76204 3.04794 3.12666 3.49876 3.57075 3.74834 3.78082 4.03164 4.05631 4.15293 4.20500 4.28071 4.35550 4.40055 4.45335 4.47411 4.64420 4.69232 4.81149 4.86712 4.97627 5.16118 5.20755 5.23717 5.28758 5.34356 5.49850 5.51657 5.63592 5.73109 5.85683 6.22994 6.34702 6.58201 6.77336 7.02222 7.41790 8.91993 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.017041 B = 0.003150 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.694151 B = 8885.472673 C = 8961.447517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.029 3.971 3 Si 0.944 3.056 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.506 4.506 8 H 0.042 0.958 9 C 0.002 3.998 10 C 0.120 3.880 11 O -0.319 6.319 12 C 0.134 3.866 13 C -0.211 4.211 14 C -0.052 4.052 15 C -0.159 4.159 16 C 0.125 3.875 17 O -0.248 6.248 18 C 0.470 3.530 19 N -0.579 5.579 20 C 0.167 3.833 21 C -0.240 4.240 22 C 0.175 3.825 23 N -0.550 5.550 24 C -0.164 4.164 25 C -0.187 4.187 26 C -0.134 4.134 27 H 0.262 0.738 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.139 0.861 31 H 0.172 0.828 32 H 0.152 0.848 33 H 0.200 0.800 34 H 0.198 0.802 35 H 0.219 0.781 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.163 -18.334 -12.894 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.171 4.171 3 Si 0.770 3.230 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.001 3.999 10 C 0.045 3.955 11 O -0.232 6.232 12 C 0.087 3.913 13 C -0.229 4.229 14 C -0.070 4.070 15 C -0.177 4.177 16 C 0.082 3.918 17 O -0.149 6.149 18 C 0.169 3.831 19 N -0.308 5.308 20 C 0.004 3.996 21 C -0.262 4.262 22 C 0.011 3.989 23 N -0.276 5.276 24 C -0.183 4.183 25 C -0.224 4.224 26 C -0.171 4.171 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.157 0.843 31 H 0.189 0.811 32 H 0.169 0.831 33 H 0.217 0.783 34 H 0.215 0.785 35 H 0.235 0.765 36 H 0.131 0.869 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.715 -17.060 -13.105 22.258 hybrid contribution 0.629 0.659 0.551 1.065 sum 6.344 -16.400 -12.554 21.606 Atomic orbital electron populations 1.70069 1.06592 1.27155 1.50188 1.25578 0.95687 1.01567 0.94314 0.85719 0.79051 0.80373 0.77837 1.19968 1.20560 1.20051 1.20619 0.92337 0.90430 1.51028 0.93935 1.18874 1.00897 0.93864 0.86250 1.22332 0.83367 0.97291 0.92460 1.86153 1.35726 1.79997 1.21371 1.19108 0.94012 0.93452 0.84719 1.21630 0.96168 1.06805 0.98321 1.21126 0.99529 0.94527 0.91818 1.21216 0.89693 1.04739 1.02084 1.18161 0.84719 0.99499 0.89433 1.84326 1.39186 1.33318 1.58099 1.20951 0.88615 0.85972 0.87608 1.68170 1.34634 1.09169 1.18816 1.23745 0.89886 0.89060 0.96958 1.23258 1.00033 1.04879 0.98014 1.23963 0.95515 0.85231 0.94170 1.67577 1.08497 1.21428 1.30103 1.20308 0.97582 1.06762 0.93677 1.22997 0.99326 0.96264 1.03825 1.22428 0.91895 1.01213 1.01613 0.92881 0.93794 0.92464 0.84281 0.81070 0.83058 0.78327 0.78470 0.76503 0.86918 0.89093 0.90552 0.91373 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.74 12.66 21.45 0.27 -50.47 16 2 C 0.03 1.62 5.43 84.65 0.46 2.08 16 3 Si 0.94 44.52 29.54 68.60 2.03 46.55 16 4 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.51 -28.62 8.76 25.60 0.22 -28.39 16 8 H 0.04 2.49 7.82 -2.91 -0.02 2.47 16 9 C 0.00 0.08 1.68 -52.93 -0.09 -0.01 16 10 C 0.12 5.43 4.56 71.98 0.33 5.76 16 11 O -0.32 -14.66 10.06 -92.49 -0.93 -15.59 16 12 C 0.13 5.25 6.68 22.49 0.15 5.40 16 13 C -0.21 -6.87 9.04 22.38 0.20 -6.67 16 14 C -0.05 -1.35 10.03 22.24 0.22 -1.13 16 15 C -0.16 -4.37 9.98 22.38 0.22 -4.15 16 16 C 0.12 4.16 5.17 22.50 0.12 4.28 16 17 O -0.25 -8.43 10.04 -31.12 -0.31 -8.74 16 18 C 0.47 14.22 8.40 180.56 1.52 15.73 16 19 N -0.58 -16.08 9.02 -313.44 -2.83 -18.90 16 20 C 0.17 2.92 11.30 84.71 0.96 3.88 16 21 C -0.24 -2.65 10.16 22.44 0.23 -2.43 16 22 C 0.17 2.55 11.30 84.71 0.96 3.51 16 23 N -0.55 -14.12 10.46 -313.44 -3.28 -17.40 16 24 C -0.16 -6.19 9.40 22.46 0.21 -5.98 16 25 C -0.19 -8.10 9.96 30.62 0.30 -7.79 16 26 C -0.13 -6.12 9.15 30.62 0.28 -5.84 16 27 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 28 H 0.04 2.13 7.66 -2.39 -0.02 2.11 16 29 H 0.06 2.25 7.61 -2.39 -0.02 2.24 16 30 H 0.14 4.34 6.29 -2.91 -0.02 4.33 16 31 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 33 H 0.20 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.20 0.31 8.06 -2.91 -0.02 0.28 16 35 H 0.22 1.10 8.06 -2.91 -0.02 1.08 16 36 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 37 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 38 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.07 3.39 8.14 -2.39 -0.02 3.37 16 40 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -72.77 352.74 2.30 -70.47 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 1.05 Total: 15.80 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 6.29 Total: -21.73 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -5.84 Total: -86.76 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -1.24 Total: -24.33 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -72.77 2.30 -70.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596254669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.649 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds