Wall clock time and date at job start Fri Apr 10 2020 22:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 110.53178 * 2 1 4 4 N 1.47309 * 110.59842 * 237.00226 * 2 1 3 5 5 C 1.34527 * 106.61547 * 241.24909 * 4 2 1 6 6 O 1.21541 * 123.77117 * 180.20987 * 5 4 2 7 7 N 1.33790 * 112.46068 * 0.38733 * 5 4 2 8 8 C 1.46496 * 124.18153 * 179.86717 * 7 5 4 9 9 C 1.52999 * 109.46771 * 269.69688 * 8 7 5 10 10 S 1.81408 * 109.47251 * 180.02562 * 9 8 7 11 11 C 1.81392 * 103.00033 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47237 * 179.97438 * 11 10 9 13 13 C 1.50705 * 115.55013 * 297.82508 * 12 11 10 14 14 H 1.07998 * 119.99773 * 95.15356 * 13 12 11 15 15 C 1.37877 * 119.99810 * 274.88017 * 13 12 11 16 16 N 1.31515 * 119.99919 * 6.56582 * 15 13 12 17 17 Si 1.86794 * 119.99692 * 186.57166 * 15 13 12 18 18 H 1.48503 * 109.47493 * 90.00104 * 17 15 13 19 19 H 1.48507 * 109.47003 * 209.99621 * 17 15 13 20 20 H 1.48504 * 109.47373 * 329.99664 * 17 15 13 21 21 C 1.53001 * 117.49942 * 83.49065 * 12 11 10 22 22 C 1.53001 * 117.50182 * 152.15097 * 12 11 10 23 23 C 1.34777 * 111.64394 * 359.59183 * 7 5 4 24 24 O 1.21225 * 127.15706 * 180.19799 * 23 7 5 25 25 H 1.09004 * 109.47102 * 297.17235 * 1 2 3 26 26 H 1.08996 * 109.47335 * 57.17316 * 1 2 3 27 27 H 1.08996 * 109.47284 * 177.17369 * 1 2 3 28 28 H 1.08997 * 109.47073 * 182.83011 * 3 2 1 29 29 H 1.09001 * 109.46892 * 302.82417 * 3 2 1 30 30 H 1.09001 * 109.47529 * 62.83033 * 3 2 1 31 31 H 0.96995 * 126.68943 * 61.44116 * 4 2 1 32 32 H 1.08996 * 109.47609 * 149.69753 * 8 7 5 33 33 H 1.09004 * 109.47351 * 29.68986 * 8 7 5 34 34 H 1.09001 * 109.47677 * 59.99716 * 9 8 7 35 35 H 1.09000 * 109.47066 * 299.99598 * 9 8 7 36 36 H 1.08998 * 109.47687 * 60.00144 * 11 10 9 37 37 H 1.09003 * 109.47466 * 299.99497 * 11 10 9 38 38 H 0.97004 * 119.99783 * 184.58326 * 16 15 13 39 39 H 1.09003 * 117.50287 * 215.00334 * 21 12 11 40 40 H 1.09001 * 117.49614 * 0.02754 * 21 12 11 41 41 H 1.08993 * 117.49862 * 359.97438 * 22 12 11 42 42 H 1.09004 * 117.49936 * 144.97194 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 7 2.0483 -0.7510 -1.1565 5 6 2.7641 -1.7761 -0.6600 6 8 3.3371 -2.5966 -1.3497 7 7 2.7715 -1.7938 0.6777 8 6 3.4687 -2.7990 1.4837 9 6 2.5253 -3.9699 1.7663 10 16 3.3883 -5.2145 2.7649 11 6 2.1290 -6.5000 2.9924 12 6 2.7106 -7.6413 3.8291 13 6 3.8853 -8.3616 3.2186 14 1 4.8920 -8.0708 3.4799 15 6 3.6745 -9.3953 2.3310 16 7 2.4565 -9.6689 1.9174 17 14 5.1192 -10.4072 1.7159 18 1 5.3373 -11.5617 2.6241 19 1 4.8290 -10.9028 0.3464 20 1 6.3397 -9.5617 1.6881 21 6 2.6927 -7.4821 5.3507 22 6 1.7366 -8.4665 4.6725 23 6 2.0633 -0.7691 1.1924 24 8 1.8885 -0.5158 2.3649 25 1 -0.3633 0.4693 0.9143 26 1 -0.3634 0.5571 -0.8635 27 1 -0.3633 -1.0264 -0.0507 28 1 3.1553 1.4131 -0.0507 29 1 1.6724 1.9684 -0.8636 30 1 1.7547 1.9377 0.9143 31 1 1.9041 -0.5447 -2.0932 32 1 3.7864 -2.3528 2.4260 33 1 4.3419 -3.1592 0.9396 34 1 2.2076 -4.4163 0.8239 35 1 1.6522 -3.6099 2.3104 36 1 1.8212 -6.8834 2.0197 37 1 1.2657 -6.0762 3.5057 38 1 2.2994 -10.4367 1.3458 39 1 3.5305 -7.8983 5.9102 40 1 2.2661 -6.5644 5.7557 41 1 0.6816 -8.1961 4.6316 42 1 1.9452 -9.5305 4.7854 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596335205.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:49 Heat of formation + Delta-G solvation = -24.150948 kcal Electronic energy + Delta-G solvation = -23569.810300 eV Core-core repulsion = 20063.795792 eV Total energy + Delta-G solvation = -3506.014508 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.75011 -38.81416 -36.95439 -36.55594 -35.83238 -32.16834 -31.90692 -30.78441 -28.03704 -27.68869 -25.42732 -24.97375 -23.88797 -21.73827 -21.10642 -20.54351 -19.16396 -18.19545 -17.10959 -16.53805 -16.16251 -15.98565 -15.85620 -15.01035 -14.76782 -14.62872 -14.44614 -14.35362 -13.90494 -13.76396 -13.23748 -13.12267 -12.83934 -12.76205 -12.70179 -12.56966 -12.08408 -11.99704 -11.44753 -11.32763 -11.00347 -10.90510 -10.82140 -10.46187 -10.33055 -10.17697 -10.01693 -9.80789 -9.60006 -9.32340 -8.80430 -8.41636 -8.01018 -6.81172 -6.01803 -4.06732 1.38400 1.78006 2.48363 2.82140 2.85836 3.34075 3.41253 3.45396 3.46771 3.59323 4.08594 4.28125 4.45782 4.75808 4.93772 4.98723 5.02814 5.05129 5.13122 5.27784 5.30112 5.35035 5.39165 5.43840 5.47954 5.57521 5.78390 5.97410 5.98545 6.21296 6.40861 6.50109 6.53362 6.74686 6.82063 6.84882 7.07126 7.14352 7.40569 7.49096 7.91838 7.92373 8.41636 8.94974 9.59590 11.07520 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.020469 B = 0.003170 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.570233 B = 8830.892363 C = 9543.640689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.117 3.883 3 C -0.146 4.146 4 N -0.724 5.724 5 C 0.700 3.300 6 O -0.533 6.533 7 N -0.572 5.572 8 C 0.139 3.861 9 C -0.124 4.124 10 S -0.223 6.223 11 C -0.024 4.024 12 C 0.055 3.945 13 C -0.485 4.485 14 H 0.063 0.937 15 C 0.072 3.928 16 N -0.882 5.882 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.271 1.271 21 C -0.205 4.205 22 C -0.149 4.149 23 C 0.528 3.472 24 O -0.460 6.460 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.438 0.562 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.259 0.741 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.879 22.150 -5.099 23.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.026 3.974 3 C -0.204 4.204 4 N -0.389 5.389 5 C 0.401 3.599 6 O -0.405 6.405 7 N -0.319 5.319 8 C 0.017 3.983 9 C -0.273 4.273 10 S 0.005 5.995 11 C -0.173 4.173 12 C 0.054 3.946 13 C -0.523 4.523 14 H 0.081 0.919 15 C -0.131 4.131 16 N -0.518 5.518 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.196 1.196 21 C -0.242 4.242 22 C -0.189 4.189 23 C 0.314 3.686 24 O -0.329 6.329 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.282 0.718 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.657 21.727 -4.566 22.501 hybrid contribution -0.821 -0.707 -1.318 1.706 sum -4.478 21.020 -5.884 22.283 Atomic orbital electron populations 1.22011 0.90148 1.04014 1.04398 1.21481 0.97257 0.94226 0.84439 1.22000 1.02132 0.91889 1.04415 1.45690 1.55035 1.29212 1.08970 1.15927 0.79933 0.82263 0.81816 1.91067 1.47700 1.40912 1.60799 1.46539 1.49403 1.28088 1.07870 1.21419 0.94726 0.86225 0.95888 1.23637 1.01587 0.98433 1.03622 1.86790 1.26059 1.18417 1.68249 1.23102 0.94880 0.95026 1.04283 1.18442 0.96921 0.92823 0.86445 1.20384 0.91107 1.16049 1.24715 0.91883 1.24940 0.95643 0.97342 0.95133 1.70009 1.20070 1.27308 1.34456 0.86632 0.83250 0.80477 0.78006 1.20764 1.21307 1.19565 1.23029 1.02476 1.00091 0.98614 1.22581 0.93767 0.96952 1.05590 1.20821 0.77375 0.80494 0.89950 1.90808 1.56363 1.69136 1.16552 0.89705 0.90218 0.91224 0.91314 0.90244 0.89704 0.71767 0.87871 0.87437 0.89981 0.90731 0.89722 0.93418 0.93099 0.90216 0.91420 0.91912 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.98 37.16 0.33 -0.50 16 2 C 0.12 0.86 1.37 -132.09 -0.18 0.67 16 3 C -0.15 -0.73 8.99 37.16 0.33 -0.40 16 4 N -0.72 -5.84 5.91 -52.93 -0.31 -6.15 16 5 C 0.70 8.88 8.62 -88.02 -0.76 8.12 16 6 O -0.53 -8.88 17.48 5.33 0.09 -8.79 16 7 N -0.57 -7.24 2.60 -120.73 -0.31 -7.56 16 8 C 0.14 1.97 5.71 -4.04 -0.02 1.94 16 9 C -0.12 -2.03 6.26 37.16 0.23 -1.80 16 10 S -0.22 -4.53 21.33 -107.50 -2.29 -6.82 16 11 C -0.02 -0.55 5.81 37.16 0.22 -0.34 16 12 C 0.06 1.36 1.37 -155.66 -0.21 1.15 16 13 C -0.48 -13.25 8.38 -34.44 -0.29 -13.54 16 14 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 15 C 0.07 1.99 5.39 -17.82 -0.10 1.90 16 16 N -0.88 -24.94 12.93 55.43 0.72 -24.22 16 17 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.20 -4.50 9.96 -26.69 -0.27 -4.77 16 22 C -0.15 -3.47 9.45 -26.69 -0.25 -3.73 16 23 C 0.53 5.96 6.98 -10.55 -0.07 5.89 16 24 O -0.46 -6.27 17.76 5.61 0.10 -6.18 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.44 2.40 8.96 -40.82 -0.37 2.03 16 32 H 0.10 1.38 8.00 -51.93 -0.42 0.97 16 33 H 0.11 1.58 7.85 -51.93 -0.41 1.17 16 34 H 0.08 1.43 8.14 -51.92 -0.42 1.01 16 35 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 36 H 0.08 2.10 8.14 -51.92 -0.42 1.68 16 37 H 0.05 0.99 8.11 -51.92 -0.42 0.57 16 38 H 0.26 7.05 8.32 -40.82 -0.34 6.72 16 39 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 371.06 15.07 5.59 5.59 Total: -1.00 -32.12 371.06 -9.13 -41.25 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.65 Total: 1.77 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -1.04 Total: -5.39 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.09 Total: -37.93 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.19 Total: -14.96 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -4.53 SS G_CDS: -2.29 Total: -6.82 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.12 -9.13 -41.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596335205.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.094 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds