Wall clock time and date at job start Fri Apr 10 2020 22:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31879 * 119.61741 * 2 1 4 4 C 1.31857 * 121.72569 * 179.97438 * 3 2 1 5 5 C 1.38224 * 120.76155 * 359.97438 * 4 3 2 6 6 C 1.38630 * 119.16347 * 0.02562 * 5 4 3 7 7 C 1.38181 * 119.61274 * 180.23600 * 2 1 3 8 8 C 1.50699 * 120.42260 * 0.02562 * 7 2 1 9 9 N 1.46498 * 109.47178 * 80.27378 * 8 7 2 10 10 S 1.65598 * 120.00120 * 164.99767 * 9 8 7 11 11 O 1.42101 * 104.27743 * 181.07020 * 10 9 8 12 12 O 1.42097 * 104.27933 * 308.93301 * 10 9 8 13 13 C 1.81402 * 104.44583 * 65.00159 * 10 9 8 14 14 C 1.52998 * 109.47352 * 179.97438 * 13 10 9 15 15 C 1.53000 * 109.47019 * 300.00314 * 14 13 10 16 16 C 1.53001 * 109.47081 * 59.99782 * 14 13 10 17 17 C 1.50696 * 109.47713 * 179.97438 * 14 13 10 18 18 H 1.07999 * 119.99664 * 0.02562 * 17 14 13 19 19 C 1.37878 * 120.00254 * 179.97438 * 17 14 13 20 20 N 1.31510 * 119.99922 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 119.99939 * 179.97438 * 19 17 14 22 22 H 1.48508 * 109.47027 * 60.00505 * 21 19 17 23 23 H 1.48495 * 109.46972 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47324 * 300.00673 * 21 19 17 25 25 H 1.09002 * 109.47409 * 89.99775 * 1 2 3 26 26 H 1.08999 * 109.47462 * 209.99888 * 1 2 3 27 27 H 1.08998 * 109.46992 * 330.00348 * 1 2 3 28 28 H 1.07997 * 119.62057 * 179.97438 * 4 3 2 29 29 H 1.07998 * 120.41893 * 179.97438 * 5 4 3 30 30 H 1.08002 * 120.78834 * 179.97438 * 6 5 4 31 31 H 1.09006 * 109.46828 * 200.27690 * 8 7 2 32 32 H 1.09008 * 109.46872 * 320.27383 * 8 7 2 33 33 H 0.96998 * 119.99639 * 345.00372 * 9 8 7 34 34 H 1.09005 * 109.47354 * 300.00267 * 13 10 9 35 35 H 1.09003 * 109.47181 * 60.00035 * 13 10 9 36 36 H 1.09001 * 109.47402 * 59.99373 * 15 14 13 37 37 H 1.09001 * 109.47250 * 179.97438 * 15 14 13 38 38 H 1.09003 * 109.46930 * 299.99591 * 15 14 13 39 39 H 1.08996 * 109.47180 * 60.00298 * 16 14 13 40 40 H 1.09001 * 109.47336 * 180.02562 * 16 14 13 41 41 H 1.09004 * 109.47393 * 300.00188 * 16 14 13 42 42 H 0.97005 * 120.00259 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1950 0.0005 5 6 4.2266 0.0340 0.0016 6 6 3.5765 -1.1904 0.0016 7 6 2.1898 -1.2013 -0.0049 8 6 1.4371 -2.5069 -0.0109 9 7 0.9916 -2.8075 -1.3737 10 16 0.4719 -4.3322 -1.7576 11 8 0.1519 -4.2557 -3.1400 12 8 1.5096 -5.1838 -1.2918 13 6 -1.0312 -4.5605 -0.7680 14 6 -1.6137 -5.9492 -1.0382 15 6 -1.9566 -6.0781 -2.5237 16 6 -0.5856 -7.0164 -0.6577 17 6 -2.8621 -6.1392 -0.2157 18 1 -3.2058 -5.3483 0.4344 19 6 -3.5659 -7.3222 -0.2940 20 7 -3.1475 -8.2850 -1.0861 21 14 -5.1129 -7.5579 0.7261 22 1 -6.1110 -6.5216 0.3583 23 1 -5.6790 -8.9052 0.4628 24 1 -4.7789 -7.4337 2.1677 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 3.9753 2.1528 0.0001 29 1 5.3056 0.0802 0.0016 30 1 4.1367 -2.1137 0.0020 31 1 2.0907 -3.3046 0.3421 32 1 0.5706 -2.4297 0.6460 33 1 1.0011 -2.1134 -2.0512 34 1 -0.7870 -4.4682 0.2903 35 1 -1.7639 -3.8005 -1.0395 36 1 -1.0534 -5.9409 -3.1184 37 1 -2.3712 -7.0676 -2.7164 38 1 -2.6891 -5.3178 -2.7949 39 1 -0.3413 -6.9246 0.4005 40 1 -1.0004 -8.0058 -0.8507 41 1 0.3176 -6.8793 -1.2524 42 1 -3.6425 -9.1175 -1.1410 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599446019.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:51 Heat of formation + Delta-G solvation = -44.262705 kcal Electronic energy + Delta-G solvation = -24407.536555 eV Core-core repulsion = 20900.649935 eV Total energy + Delta-G solvation = -3506.886619 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.62129 -36.62673 -36.30169 -35.87539 -35.31196 -33.23575 -32.01524 -31.68385 -28.09374 -26.66803 -26.07608 -25.73642 -25.23791 -22.84127 -21.87275 -19.66800 -18.82682 -17.48776 -17.05747 -16.68353 -16.27335 -15.92533 -15.37908 -14.97072 -14.78581 -14.71448 -14.24871 -13.77940 -13.35091 -13.29112 -13.02298 -12.93434 -12.63054 -12.52787 -12.35487 -12.12986 -12.10077 -11.55177 -11.47041 -11.10585 -11.07223 -10.96881 -10.73004 -10.43262 -10.29674 -10.14044 -10.03335 -9.72248 -9.67346 -9.64170 -9.31210 -9.11850 -8.70328 -8.41794 -6.05228 -4.17511 0.64673 0.92497 1.05759 3.15616 3.25702 3.31509 3.32836 3.57798 4.04883 4.23768 4.34675 4.39581 4.56703 4.61605 4.72459 4.79793 5.09129 5.18183 5.20203 5.37637 5.40639 5.43307 5.48727 5.60400 5.66192 5.84762 5.90048 5.93878 6.04580 6.34523 6.45551 6.67764 6.77383 6.88118 6.98010 7.06398 7.29401 7.48197 7.65800 7.73808 7.96130 8.07313 8.30765 8.80795 9.48073 10.96037 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.022967 B = 0.003571 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.823770 B = 7838.148115 C = 8426.486779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.144 3.856 3 N -0.487 5.487 4 C 0.104 3.896 5 C -0.183 4.183 6 C -0.054 4.054 7 C -0.147 4.147 8 C 0.160 3.840 9 N -1.127 6.127 10 S 2.593 3.407 11 O -0.963 6.963 12 O -0.964 6.964 13 C -0.582 4.582 14 C 0.082 3.918 15 C -0.164 4.164 16 C -0.164 4.164 17 C -0.503 4.503 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.155 0.845 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.412 0.588 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.027 0.973 37 H 0.095 0.905 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.095 0.905 41 H 0.028 0.972 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.966 15.167 3.052 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.006 3.994 3 N -0.197 5.197 4 C -0.053 4.053 5 C -0.203 4.203 6 C -0.081 4.081 7 C -0.150 4.150 8 C 0.033 3.967 9 N -0.883 5.883 10 S 2.691 3.309 11 O -0.953 6.953 12 O -0.954 6.954 13 C -0.715 4.715 14 C 0.080 3.920 15 C -0.222 4.222 16 C -0.221 4.221 17 C -0.543 4.543 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.521 5.521 21 Si 0.724 3.276 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.203 1.203 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.173 0.827 29 H 0.153 0.847 30 H 0.157 0.843 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.245 0.755 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.046 0.954 37 H 0.114 0.886 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.113 0.887 41 H 0.047 0.953 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.903 15.026 2.518 18.735 hybrid contribution -0.665 -0.268 0.763 1.047 sum 10.239 14.757 3.281 18.259 Atomic orbital electron populations 1.20875 0.88536 1.03966 1.03739 1.21246 0.97196 0.87630 0.93370 1.67575 1.10044 1.29098 1.12948 1.22780 0.89514 0.98516 0.94505 1.22140 1.01580 0.93346 1.03188 1.21639 0.93690 0.98895 0.93870 1.20678 0.94569 0.95848 1.03917 1.20109 0.98443 0.94248 0.83900 1.55933 1.82684 1.31999 1.17699 1.05670 0.77497 0.72065 0.75684 1.93561 1.85853 1.84898 1.31000 1.93536 1.54687 1.64368 1.82767 1.30528 1.17404 1.10254 1.13342 1.17923 0.95045 0.84422 0.94591 1.22278 0.99537 1.04763 0.95592 1.22277 0.96193 1.04449 0.99222 1.20900 1.07852 1.00645 1.24870 0.92323 1.24936 0.97594 0.95835 0.95344 1.69789 1.39329 1.05618 1.37413 0.86596 0.83122 0.77323 0.80569 1.20267 1.21201 1.20263 0.89861 0.89869 0.90327 0.82742 0.84655 0.84289 0.89166 0.90276 0.75532 0.86415 0.86123 0.95400 0.88644 0.94444 0.94467 0.88668 0.95347 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.76 36.01 0.35 -0.70 16 2 C 0.14 1.56 6.78 -82.59 -0.56 1.00 16 3 N -0.49 -5.51 10.27 -9.48 -0.10 -5.61 16 4 C 0.10 0.95 11.18 -17.55 -0.20 0.75 16 5 C -0.18 -1.51 10.11 -39.44 -0.40 -1.91 16 6 C -0.05 -0.52 9.82 -39.27 -0.39 -0.90 16 7 C -0.15 -1.55 5.29 -104.48 -0.55 -2.10 16 8 C 0.16 1.76 5.67 -5.19 -0.03 1.73 16 9 N -1.13 -14.47 5.88 -11.65 -0.07 -14.53 16 10 S 2.59 45.66 4.49 -107.50 -0.48 45.17 16 11 O -0.96 -19.66 15.70 -57.54 -0.90 -20.57 16 12 O -0.96 -19.32 15.12 -57.54 -0.87 -20.19 16 13 C -0.58 -10.70 5.01 37.16 0.19 -10.52 16 14 C 0.08 1.94 0.52 -155.66 -0.08 1.86 16 15 C -0.16 -3.97 7.78 37.16 0.29 -3.68 16 16 C -0.16 -3.93 7.77 37.16 0.29 -3.64 16 17 C -0.50 -12.91 8.01 -34.44 -0.28 -13.18 16 18 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 20 N -0.88 -23.82 9.35 55.43 0.52 -23.30 16 21 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 0.69 6.12 -51.93 -0.32 0.37 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 29 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 30 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.09 1.00 7.59 -51.93 -0.39 0.60 16 32 H 0.08 0.73 6.41 -51.92 -0.33 0.40 16 33 H 0.41 4.76 8.61 -34.47 -0.30 4.46 16 34 H 0.12 1.90 8.14 -51.92 -0.42 1.48 16 35 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 36 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 37 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 41 H 0.03 0.65 5.47 -51.93 -0.28 0.36 16 42 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -32.43 345.40 -9.06 -41.49 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.89 Total: 6.70 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: -1.46 Total: -29.68 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.35 Total: -43.45 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -1.77 Total: -40.75 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 45.66 SS G_CDS: -0.48 Total: 45.17 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.43 -9.06 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599446019.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.768 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds