Wall clock time and date at job start Fri Apr 10 2020 22:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31879 * 119.61741 * 2 1 4 4 C 1.31857 * 121.72569 * 179.97438 * 3 2 1 5 5 C 1.38224 * 120.76155 * 359.97438 * 4 3 2 6 6 C 1.38630 * 119.16347 * 0.02562 * 5 4 3 7 7 C 1.38181 * 119.61274 * 180.23600 * 2 1 3 8 8 C 1.50699 * 120.42260 * 0.02562 * 7 2 1 9 9 N 1.46498 * 109.47178 * 80.27378 * 8 7 2 10 10 S 1.65598 * 120.00120 * 164.99767 * 9 8 7 11 11 O 1.42101 * 104.27743 * 181.07020 * 10 9 8 12 12 O 1.42097 * 104.27933 * 308.93301 * 10 9 8 13 13 C 1.81402 * 104.44583 * 65.00159 * 10 9 8 14 14 C 1.52998 * 109.47352 * 179.97438 * 13 10 9 15 15 C 1.53000 * 109.47019 * 300.00314 * 14 13 10 16 16 C 1.53001 * 109.47081 * 59.99782 * 14 13 10 17 17 C 1.50696 * 109.47713 * 179.97438 * 14 13 10 18 18 H 1.07999 * 119.99664 * 0.02562 * 17 14 13 19 19 C 1.37878 * 120.00254 * 179.97438 * 17 14 13 20 20 N 1.31510 * 119.99922 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 119.99939 * 179.97438 * 19 17 14 22 22 H 1.48508 * 109.47027 * 60.00505 * 21 19 17 23 23 H 1.48495 * 109.46972 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47324 * 300.00673 * 21 19 17 25 25 H 1.09002 * 109.47409 * 89.99775 * 1 2 3 26 26 H 1.08999 * 109.47462 * 209.99888 * 1 2 3 27 27 H 1.08998 * 109.46992 * 330.00348 * 1 2 3 28 28 H 1.07997 * 119.62057 * 179.97438 * 4 3 2 29 29 H 1.07998 * 120.41893 * 179.97438 * 5 4 3 30 30 H 1.08002 * 120.78834 * 179.97438 * 6 5 4 31 31 H 1.09006 * 109.46828 * 200.27690 * 8 7 2 32 32 H 1.09008 * 109.46872 * 320.27383 * 8 7 2 33 33 H 0.96998 * 119.99639 * 345.00372 * 9 8 7 34 34 H 1.09005 * 109.47354 * 300.00267 * 13 10 9 35 35 H 1.09003 * 109.47181 * 60.00035 * 13 10 9 36 36 H 1.09001 * 109.47402 * 59.99373 * 15 14 13 37 37 H 1.09001 * 109.47250 * 179.97438 * 15 14 13 38 38 H 1.09003 * 109.46930 * 299.99591 * 15 14 13 39 39 H 1.08996 * 109.47180 * 60.00298 * 16 14 13 40 40 H 1.09001 * 109.47336 * 180.02562 * 16 14 13 41 41 H 1.09004 * 109.47393 * 300.00188 * 16 14 13 42 42 H 0.97005 * 120.00259 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1950 0.0005 5 6 4.2266 0.0340 0.0016 6 6 3.5765 -1.1904 0.0016 7 6 2.1898 -1.2013 -0.0049 8 6 1.4371 -2.5069 -0.0109 9 7 0.9916 -2.8075 -1.3737 10 16 0.4719 -4.3322 -1.7576 11 8 0.1519 -4.2557 -3.1400 12 8 1.5096 -5.1838 -1.2918 13 6 -1.0312 -4.5605 -0.7680 14 6 -1.6137 -5.9492 -1.0382 15 6 -1.9566 -6.0781 -2.5237 16 6 -0.5856 -7.0164 -0.6577 17 6 -2.8621 -6.1392 -0.2157 18 1 -3.2058 -5.3483 0.4344 19 6 -3.5659 -7.3222 -0.2940 20 7 -3.1475 -8.2850 -1.0861 21 14 -5.1129 -7.5579 0.7261 22 1 -6.1110 -6.5216 0.3583 23 1 -5.6790 -8.9052 0.4628 24 1 -4.7789 -7.4337 2.1677 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 3.9753 2.1528 0.0001 29 1 5.3056 0.0802 0.0016 30 1 4.1367 -2.1137 0.0020 31 1 2.0907 -3.3046 0.3421 32 1 0.5706 -2.4297 0.6460 33 1 1.0011 -2.1134 -2.0512 34 1 -0.7870 -4.4682 0.2903 35 1 -1.7639 -3.8005 -1.0395 36 1 -1.0534 -5.9409 -3.1184 37 1 -2.3712 -7.0676 -2.7164 38 1 -2.6891 -5.3178 -2.7949 39 1 -0.3413 -6.9246 0.4005 40 1 -1.0004 -8.0058 -0.8507 41 1 0.3176 -6.8793 -1.2524 42 1 -3.6425 -9.1175 -1.1410 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599446019.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:50 Heat of formation + Delta-G solvation = -66.415046 kcal Electronic energy + Delta-G solvation = -24408.497152 eV Core-core repulsion = 20900.649935 eV Total energy + Delta-G solvation = -3507.847217 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.33326 -38.11683 -38.09035 -36.95054 -36.71706 -33.91623 -33.60785 -32.86586 -28.81671 -28.26845 -27.66012 -27.23885 -26.87060 -23.58194 -22.59752 -21.37310 -20.25042 -18.83190 -17.93907 -17.80584 -17.53607 -17.11095 -16.85379 -16.61311 -16.03070 -15.67310 -15.12128 -15.00358 -14.64948 -14.48653 -14.39003 -14.01181 -13.95210 -13.78575 -13.43381 -13.31483 -13.04148 -12.97678 -12.94175 -12.84098 -12.77050 -12.46895 -12.33188 -12.15554 -12.13417 -11.92429 -11.53034 -11.36503 -10.78501 -10.66822 -10.40083 -10.38529 -10.31568 -9.81960 -8.00581 -6.19023 -0.63081 0.11424 0.32303 1.47328 1.48015 1.54736 1.95071 2.46294 2.82773 2.88241 3.21940 3.32485 3.41534 3.61772 3.89270 3.93112 4.03540 4.10401 4.22422 4.34986 4.52048 4.63235 4.66357 4.70915 4.76250 4.79389 4.86693 4.89969 4.92463 5.03150 5.11891 5.23555 5.24879 5.33260 5.42364 5.53883 5.67477 5.78780 6.00661 6.04367 6.14892 6.36838 6.86178 7.03572 7.49413 8.98964 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.022967 B = 0.003571 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.823770 B = 7838.148115 C = 8426.486779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.131 3.869 3 N -0.513 5.513 4 C 0.097 3.903 5 C -0.178 4.178 6 C -0.065 4.065 7 C -0.157 4.157 8 C 0.152 3.848 9 N -1.110 6.110 10 S 2.614 3.386 11 O -0.994 6.994 12 O -0.989 6.989 13 C -0.585 4.585 14 C 0.069 3.931 15 C -0.161 4.161 16 C -0.160 4.160 17 C -0.516 4.516 18 H 0.066 0.934 19 C 0.017 3.983 20 N -0.909 5.909 21 Si 0.953 3.047 22 H -0.272 1.272 23 H -0.290 1.290 24 H -0.271 1.271 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.181 0.819 29 H 0.164 0.836 30 H 0.150 0.850 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.420 0.580 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.040 0.960 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.032 0.968 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.564 16.976 4.164 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.007 4.007 3 N -0.223 5.223 4 C -0.060 4.060 5 C -0.197 4.197 6 C -0.092 4.092 7 C -0.160 4.160 8 C 0.026 3.974 9 N -0.870 5.870 10 S 2.712 3.288 11 O -0.984 6.984 12 O -0.979 6.979 13 C -0.718 4.718 14 C 0.067 3.933 15 C -0.219 4.219 16 C -0.218 4.218 17 C -0.555 4.555 18 H 0.084 0.916 19 C -0.182 4.182 20 N -0.548 5.548 21 Si 0.779 3.221 22 H -0.197 1.197 23 H -0.216 1.216 24 H -0.196 1.196 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.198 0.802 29 H 0.182 0.818 30 H 0.168 0.832 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.255 0.745 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.051 0.949 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.496 16.841 3.631 20.711 hybrid contribution -0.749 -0.745 0.425 1.139 sum 10.746 16.096 4.056 19.774 Atomic orbital electron populations 1.20942 0.87901 1.04471 1.04071 1.21461 0.97889 0.87729 0.93622 1.67604 1.11280 1.29483 1.13956 1.23303 0.89081 1.00081 0.93554 1.22455 1.03039 0.92502 1.01738 1.21930 0.93589 1.00025 0.93628 1.20629 0.95045 0.95296 1.05075 1.20348 0.99545 0.94703 0.82766 1.55451 1.82020 1.30455 1.19034 1.04727 0.76800 0.72683 0.74582 1.93512 1.86187 1.85755 1.32952 1.93500 1.55339 1.66111 1.82963 1.30453 1.18372 1.07657 1.15303 1.17912 0.94674 0.87133 0.93565 1.22218 0.99640 1.03298 0.96723 1.22206 0.96468 1.03452 0.99649 1.21291 1.08581 1.00716 1.24938 0.91582 1.25672 1.00272 0.95881 0.96396 1.69942 1.40308 1.05862 1.38641 0.85693 0.80045 0.76941 0.79403 1.19746 1.21622 1.19597 0.89580 0.88972 0.90244 0.80238 0.81806 0.83223 0.89132 0.88238 0.74471 0.83980 0.84087 0.94986 0.91206 0.94109 0.93879 0.91290 0.94874 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.95 9.76 71.24 0.70 -1.26 16 2 C 0.13 2.62 6.78 42.54 0.29 2.91 16 3 N -0.51 -10.76 10.27 -183.89 -1.89 -12.65 16 4 C 0.10 1.53 11.18 84.69 0.95 2.48 16 5 C -0.18 -2.46 10.11 22.36 0.23 -2.23 16 6 C -0.07 -1.10 9.82 22.47 0.22 -0.88 16 7 C -0.16 -3.01 5.29 -19.77 -0.10 -3.11 16 8 C 0.15 3.02 5.67 85.63 0.49 3.50 16 9 N -1.11 -26.29 5.88 -190.78 -1.12 -27.42 16 10 S 2.61 88.55 4.49 -56.49 -0.25 88.29 16 11 O -0.99 -39.83 15.70 -127.65 -2.00 -41.84 16 12 O -0.99 -38.63 15.12 -127.65 -1.93 -40.56 16 13 C -0.58 -20.40 5.01 71.98 0.36 -20.04 16 14 C 0.07 3.22 0.52 -52.93 -0.03 3.19 16 15 C -0.16 -7.84 7.78 71.98 0.56 -7.28 16 16 C -0.16 -7.69 7.77 71.98 0.56 -7.13 16 17 C -0.52 -26.01 8.01 25.60 0.21 -25.80 16 18 H 0.07 3.15 7.74 -2.91 -0.02 3.13 16 19 C 0.02 0.89 5.15 84.66 0.44 1.33 16 20 N -0.91 -49.78 9.35 21.45 0.20 -49.58 16 21 Si 0.95 41.36 29.54 68.60 2.03 43.39 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.09 1.31 6.12 -2.39 -0.01 1.30 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 29 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 30 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 31 H 0.09 1.81 7.59 -2.38 -0.02 1.80 16 32 H 0.10 1.56 6.41 -2.38 -0.02 1.55 16 33 H 0.42 8.92 8.61 -96.75 -0.83 8.08 16 34 H 0.14 4.20 8.14 -2.39 -0.02 4.18 16 35 H 0.14 4.31 8.14 -2.39 -0.02 4.29 16 36 H 0.03 1.49 5.46 -2.39 -0.01 1.47 16 37 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 38 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 3.67 6.07 -2.39 -0.01 3.65 16 41 H 0.03 1.52 5.47 -2.39 -0.01 1.50 16 42 H 0.26 13.75 8.31 -92.70 -0.77 12.98 16 Total: -1.00 -69.16 345.40 0.09 -69.08 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.21 Total: 25.60 kcal Atomic # 6 Polarization: -59.18 SS G_CDS: 4.85 Total: -54.33 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -2.81 Total: -89.64 kcal Atomic # 8 Polarization: -78.46 SS G_CDS: -3.93 Total: -82.39 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: 88.55 SS G_CDS: -0.25 Total: 88.29 kcal Total: -69.16 0.09 -69.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599446019.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.664 kcal (2) G-P(sol) polarization free energy of solvation -69.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds