Wall clock time and date at job start Fri Apr 10 2020 22:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38302 * 119.96418 * 2 1 4 4 C 1.38268 * 120.15494 * 180.02562 * 3 2 1 5 5 C 1.38127 * 120.06722 * 359.74381 * 4 3 2 6 6 S 1.76206 * 120.03617 * 180.27778 * 5 4 3 7 7 N 1.65604 * 107.21881 * 115.25579 * 6 5 4 8 8 O 1.42099 * 106.39897 * 228.79335 * 6 5 4 9 9 O 1.42092 * 106.40218 * 1.71633 * 6 5 4 10 10 C 1.38889 * 119.92704 * 0.52886 * 5 4 3 11 11 N 1.39679 * 120.07575 * 179.74728 * 10 5 4 12 12 C 1.46496 * 119.99847 * 179.72586 * 11 10 5 13 13 C 1.53006 * 109.46995 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.46626 * 299.99666 * 13 12 11 15 15 C 1.52997 * 109.47164 * 59.99963 * 13 12 11 16 16 C 1.50698 * 109.47184 * 180.02562 * 13 12 11 17 17 H 1.08005 * 119.99819 * 359.97438 * 16 13 12 18 18 C 1.37875 * 120.00046 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00192 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99979 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47454 * 59.99696 * 20 18 16 22 22 H 1.48506 * 109.47297 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47261 * 299.99689 * 20 18 16 24 24 C 1.38079 * 119.95994 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47178 * 269.98234 * 1 2 3 26 26 H 1.09005 * 109.46938 * 29.97714 * 1 2 3 27 27 H 1.08996 * 109.47402 * 149.97460 * 1 2 3 28 28 H 1.08006 * 119.92619 * 0.02562 * 3 2 1 29 29 H 1.07991 * 119.96573 * 180.02562 * 4 3 2 30 30 H 0.96998 * 120.00292 * 150.00002 * 7 6 5 31 31 H 0.96998 * 119.99779 * 330.00054 * 7 6 5 32 32 H 0.96998 * 119.99961 * 359.72964 * 11 10 5 33 33 H 1.09001 * 109.47464 * 60.00544 * 12 11 10 34 34 H 1.09001 * 109.47459 * 300.00260 * 12 11 10 35 35 H 1.09000 * 109.47160 * 60.00369 * 14 13 12 36 36 H 1.09002 * 109.46719 * 180.02562 * 14 13 12 37 37 H 1.08993 * 109.47839 * 299.99931 * 14 13 12 38 38 H 1.09001 * 109.47375 * 59.99966 * 15 13 12 39 39 H 1.09002 * 109.46777 * 180.02562 * 15 13 12 40 40 H 1.09000 * 109.47140 * 299.99948 * 15 13 12 41 41 H 0.96996 * 120.00505 * 179.97438 * 19 18 16 42 42 H 1.07994 * 120.04002 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5804 1.2028 -0.0005 5 6 4.2764 0.0097 0.0043 6 16 6.0385 0.0165 0.0110 7 7 6.5258 -0.6539 1.4447 8 8 6.4470 -0.8818 -1.0114 9 8 6.4343 1.3806 0.0509 10 6 3.5859 -1.1954 -0.0015 11 7 4.2866 -2.4037 -0.0020 12 6 3.5566 -3.6738 -0.0019 13 6 4.5531 -4.8348 -0.0019 14 6 5.4325 -4.7520 -1.2512 15 6 5.4325 -4.7520 1.2473 16 6 3.8022 -6.1414 -0.0025 17 1 2.7221 -6.1434 -0.0025 18 6 4.4938 -7.3341 -0.0020 19 7 5.8089 -7.3316 -0.0016 20 14 3.5630 -8.9536 -0.0021 21 1 2.7097 -9.0341 -1.2148 22 1 4.5301 -10.0805 -0.0021 23 1 2.7090 -9.0337 1.2102 24 6 2.1965 -1.1963 -0.0005 25 1 -0.3633 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6559 2.1325 0.0004 29 1 4.1167 2.1401 -0.0001 30 1 7.3660 -1.1362 1.4938 31 1 5.9711 -0.5642 2.2353 32 1 5.2566 -2.4018 -0.0023 33 1 2.9298 -3.7326 -0.8917 34 1 2.9303 -3.7329 0.8882 35 1 5.9757 -3.8070 -1.2512 36 1 6.1421 -5.5794 -1.2514 37 1 4.8060 -4.8110 -2.1411 38 1 4.8060 -4.8110 2.1374 39 1 6.1427 -5.5789 1.2471 40 1 5.9757 -3.8070 1.2473 41 1 6.2956 -8.1706 -0.0008 42 1 1.6566 -2.1315 -0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601174544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:53 Heat of formation + Delta-G solvation = -62.245888 kcal Electronic energy + Delta-G solvation = -24844.192347 eV Core-core repulsion = 21336.525919 eV Total energy + Delta-G solvation = -3507.666428 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.61229 -37.35031 -36.72217 -35.69712 -34.38968 -33.10549 -32.61509 -31.26222 -28.71974 -27.42888 -25.73907 -25.62216 -24.78311 -22.11064 -21.48224 -19.48235 -18.77648 -18.23891 -17.34487 -16.69342 -16.50638 -15.79573 -15.45681 -15.00416 -14.70580 -14.25282 -14.18360 -13.94178 -13.75961 -13.54681 -12.88923 -12.42984 -12.40404 -12.18421 -12.15819 -12.05556 -11.91610 -11.81234 -11.45624 -11.26056 -11.20613 -10.94662 -10.77294 -10.66739 -10.47461 -10.30244 -10.21378 -9.88982 -9.50381 -9.40433 -9.02899 -8.84372 -8.42749 -7.36690 -6.05994 -4.17679 0.56502 1.03989 1.69865 3.22733 3.25141 3.30745 3.32351 3.56721 3.71804 3.89042 4.35083 4.60864 4.81457 4.93311 5.20327 5.28192 5.35643 5.49669 5.54683 5.68897 5.84147 5.94397 6.03280 6.05155 6.11828 6.19944 6.27087 6.39756 6.61918 6.67363 6.82392 6.90819 6.95185 7.05367 7.08723 7.25951 7.47798 7.53453 7.64381 7.89185 7.97903 8.12409 8.33671 8.81897 9.48277 10.95201 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.015799 B = 0.004609 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.887135 B = 6073.997242 C = 7476.902918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.013 3.987 3 C -0.213 4.213 4 C 0.026 3.974 5 C -0.770 4.770 6 S 2.699 3.301 7 N -1.251 6.251 8 O -0.962 6.962 9 O -0.974 6.974 10 C 0.323 3.677 11 N -0.720 5.720 12 C 0.126 3.874 13 C 0.058 3.942 14 C -0.137 4.137 15 C -0.133 4.133 16 C -0.510 4.510 17 H 0.056 0.944 18 C 0.068 3.932 19 N -0.882 5.882 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.278 1.278 24 C -0.217 4.217 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.123 0.877 29 H 0.137 0.863 30 H 0.420 0.580 31 H 0.417 0.583 32 H 0.404 0.596 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.017 0.983 36 H 0.085 0.915 37 H 0.026 0.974 38 H 0.027 0.973 39 H 0.087 0.913 40 H 0.007 0.993 41 H 0.261 0.739 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.778 14.215 3.532 15.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.012 3.988 3 C -0.234 4.234 4 C 0.006 3.994 5 C -0.866 4.866 6 S 2.789 3.211 7 N -0.925 5.925 8 O -0.952 6.952 9 O -0.963 6.963 10 C 0.208 3.792 11 N -0.344 5.344 12 C 0.003 3.997 13 C 0.057 3.943 14 C -0.195 4.195 15 C -0.190 4.190 16 C -0.549 4.549 17 H 0.074 0.926 18 C -0.134 4.134 19 N -0.520 5.520 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.240 4.240 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.141 0.859 29 H 0.155 0.845 30 H 0.251 0.749 31 H 0.244 0.756 32 H 0.244 0.756 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.104 0.896 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.106 0.894 40 H 0.026 0.974 41 H 0.072 0.928 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.162 14.201 2.671 15.038 hybrid contribution -0.747 -1.275 0.610 1.599 sum -4.909 12.926 3.281 14.211 Atomic orbital electron populations 1.20922 0.91117 1.03130 1.02706 1.19927 0.95764 0.92769 0.90376 1.20754 0.93847 0.97373 1.11440 1.20573 0.94448 0.95551 0.88836 1.29654 1.24631 0.98257 1.34029 1.01402 0.73498 0.73565 0.72596 1.53192 1.34728 1.75604 1.28938 1.93629 1.81657 1.64812 1.55055 1.93549 1.81254 1.35308 1.86228 1.17376 0.91962 0.84645 0.85258 1.45923 1.09718 1.03610 1.75182 1.21935 0.96074 0.81697 0.99952 1.18334 0.91844 0.90963 0.93170 1.21871 1.00420 1.00004 0.97197 1.21852 1.00387 0.99390 0.97406 1.20887 0.92649 0.89702 1.51617 0.92568 1.24877 0.94867 0.98961 0.94709 1.69796 1.05732 1.26557 1.49957 0.86630 0.79555 0.83030 0.78574 1.20305 1.21280 1.20337 1.20664 0.91994 0.98596 1.12757 0.90545 0.91208 0.91049 0.85950 0.84549 0.74933 0.75571 0.75615 0.92568 0.92565 0.96385 0.89600 0.95468 0.95419 0.89421 0.97421 0.92844 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 10.01 36.01 0.36 -0.76 16 2 C 0.01 0.16 5.88 -104.66 -0.62 -0.45 16 3 C -0.21 -2.57 9.70 -39.55 -0.38 -2.95 16 4 C 0.03 0.34 9.54 -39.61 -0.38 -0.04 16 5 C -0.77 -11.40 5.92 -39.38 -0.23 -11.63 16 6 S 2.70 39.29 5.55 -107.50 -0.60 38.70 16 7 N -1.25 -13.71 9.17 60.35 0.55 -13.16 16 8 O -0.96 -17.48 16.29 -57.17 -0.93 -18.41 16 9 O -0.97 -15.73 16.97 -57.17 -0.97 -16.70 16 10 C 0.32 5.19 6.61 -83.78 -0.55 4.64 16 11 N -0.72 -12.78 4.95 -58.63 -0.29 -13.07 16 12 C 0.13 2.46 3.74 -4.04 -0.02 2.44 16 13 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 14 C -0.14 -3.26 8.08 37.16 0.30 -2.96 16 15 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 16 C -0.51 -12.88 8.01 -34.44 -0.28 -13.16 16 17 H 0.06 1.39 7.74 -52.48 -0.41 0.99 16 18 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 19 N -0.88 -23.30 9.35 55.43 0.52 -22.78 16 20 Si 0.89 20.20 29.54 -169.99 -5.02 15.17 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 C -0.22 -3.18 8.96 -39.38 -0.35 -3.54 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 27 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 28 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 29 H 0.14 1.59 7.33 -52.49 -0.38 1.20 16 30 H 0.42 4.01 8.96 -34.48 -0.31 3.70 16 31 H 0.42 3.66 8.96 -34.47 -0.31 3.36 16 32 H 0.40 7.32 3.25 -40.82 -0.13 7.19 16 33 H 0.06 1.10 7.95 -51.93 -0.41 0.69 16 34 H 0.06 1.05 7.95 -51.93 -0.41 0.64 16 35 H 0.02 0.40 6.86 -51.93 -0.36 0.04 16 36 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 40 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 41 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 42 H 0.13 1.88 6.73 -52.49 -0.35 1.52 16 LS Contribution 345.04 15.07 5.20 5.20 Total: -1.00 -30.89 345.04 -9.28 -40.17 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -5.73 Total: 13.02 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: -2.02 Total: -28.14 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.78 Total: -49.01 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -1.90 Total: -35.11 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 39.29 SS G_CDS: -0.60 Total: 38.70 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.89 -9.28 -40.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601174544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.076 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds