Wall clock time and date at job start Fri Apr 10 2020 22:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38302 * 119.96418 * 2 1 4 4 C 1.38268 * 120.15494 * 180.02562 * 3 2 1 5 5 C 1.38127 * 120.06722 * 359.74381 * 4 3 2 6 6 S 1.76206 * 120.03617 * 180.27778 * 5 4 3 7 7 N 1.65604 * 107.21881 * 115.25579 * 6 5 4 8 8 O 1.42099 * 106.39897 * 228.79335 * 6 5 4 9 9 O 1.42092 * 106.40218 * 1.71633 * 6 5 4 10 10 C 1.38889 * 119.92704 * 0.52886 * 5 4 3 11 11 N 1.39679 * 120.07575 * 179.74728 * 10 5 4 12 12 C 1.46496 * 119.99847 * 179.72586 * 11 10 5 13 13 C 1.53006 * 109.46995 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.46626 * 299.99666 * 13 12 11 15 15 C 1.52997 * 109.47164 * 59.99963 * 13 12 11 16 16 C 1.50698 * 109.47184 * 180.02562 * 13 12 11 17 17 H 1.08005 * 119.99819 * 359.97438 * 16 13 12 18 18 C 1.37875 * 120.00046 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00192 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99979 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47454 * 59.99696 * 20 18 16 22 22 H 1.48506 * 109.47297 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47261 * 299.99689 * 20 18 16 24 24 C 1.38079 * 119.95994 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47178 * 269.98234 * 1 2 3 26 26 H 1.09005 * 109.46938 * 29.97714 * 1 2 3 27 27 H 1.08996 * 109.47402 * 149.97460 * 1 2 3 28 28 H 1.08006 * 119.92619 * 0.02562 * 3 2 1 29 29 H 1.07991 * 119.96573 * 180.02562 * 4 3 2 30 30 H 0.96998 * 120.00292 * 150.00002 * 7 6 5 31 31 H 0.96998 * 119.99779 * 330.00054 * 7 6 5 32 32 H 0.96998 * 119.99961 * 359.72964 * 11 10 5 33 33 H 1.09001 * 109.47464 * 60.00544 * 12 11 10 34 34 H 1.09001 * 109.47459 * 300.00260 * 12 11 10 35 35 H 1.09000 * 109.47160 * 60.00369 * 14 13 12 36 36 H 1.09002 * 109.46719 * 180.02562 * 14 13 12 37 37 H 1.08993 * 109.47839 * 299.99931 * 14 13 12 38 38 H 1.09001 * 109.47375 * 59.99966 * 15 13 12 39 39 H 1.09002 * 109.46777 * 180.02562 * 15 13 12 40 40 H 1.09000 * 109.47140 * 299.99948 * 15 13 12 41 41 H 0.96996 * 120.00505 * 179.97438 * 19 18 16 42 42 H 1.07994 * 120.04002 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5804 1.2028 -0.0005 5 6 4.2764 0.0097 0.0043 6 16 6.0385 0.0165 0.0110 7 7 6.5258 -0.6539 1.4447 8 8 6.4470 -0.8818 -1.0114 9 8 6.4343 1.3806 0.0509 10 6 3.5859 -1.1954 -0.0015 11 7 4.2866 -2.4037 -0.0020 12 6 3.5566 -3.6738 -0.0019 13 6 4.5531 -4.8348 -0.0019 14 6 5.4325 -4.7520 -1.2512 15 6 5.4325 -4.7520 1.2473 16 6 3.8022 -6.1414 -0.0025 17 1 2.7221 -6.1434 -0.0025 18 6 4.4938 -7.3341 -0.0020 19 7 5.8089 -7.3316 -0.0016 20 14 3.5630 -8.9536 -0.0021 21 1 2.7097 -9.0341 -1.2148 22 1 4.5301 -10.0805 -0.0021 23 1 2.7090 -9.0337 1.2102 24 6 2.1965 -1.1963 -0.0005 25 1 -0.3633 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6559 2.1325 0.0004 29 1 4.1167 2.1401 -0.0001 30 1 7.3660 -1.1362 1.4938 31 1 5.9711 -0.5642 2.2353 32 1 5.2566 -2.4018 -0.0023 33 1 2.9298 -3.7326 -0.8917 34 1 2.9303 -3.7329 0.8882 35 1 5.9757 -3.8070 -1.2512 36 1 6.1421 -5.5794 -1.2514 37 1 4.8060 -4.8110 -2.1411 38 1 4.8060 -4.8110 2.1374 39 1 6.1427 -5.5789 1.2471 40 1 5.9757 -3.8070 1.2473 41 1 6.2956 -8.1706 -0.0008 42 1 1.6566 -2.1315 -0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601174544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:53 Heat of formation + Delta-G solvation = -83.749925 kcal Electronic energy + Delta-G solvation = -24845.124832 eV Core-core repulsion = 21336.525919 eV Total energy + Delta-G solvation = -3508.598913 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.74761 -38.72032 -38.14158 -36.95652 -35.82307 -34.09476 -33.77492 -32.91042 -29.97362 -28.39270 -27.58999 -27.39505 -26.37273 -23.21482 -22.62594 -20.69217 -20.39593 -19.39547 -18.45443 -18.05103 -17.74715 -17.35160 -16.64295 -16.57715 -16.07960 -15.58578 -15.28497 -15.17947 -15.05465 -14.58521 -14.53596 -14.07657 -13.62950 -13.31589 -13.25277 -13.17146 -13.11918 -13.09231 -13.05647 -12.94897 -12.66788 -12.61761 -12.29433 -12.24749 -12.08622 -11.76366 -11.55470 -11.31862 -11.17141 -10.92600 -10.71054 -10.37352 -10.05046 -8.58736 -8.00434 -6.17611 -0.56096 -0.03117 0.61815 1.45636 1.47092 1.53103 2.15228 2.34102 2.48008 2.54560 2.80180 3.23363 3.47442 3.88631 3.95919 4.29233 4.34805 4.42061 4.50378 4.60819 4.68583 4.76939 4.85033 4.86268 4.93319 5.05076 5.08377 5.16856 5.19101 5.20838 5.22918 5.30551 5.42560 5.63279 5.64114 5.66922 5.87548 6.09002 6.12113 6.23381 6.28915 6.41428 6.61534 6.88519 7.50557 8.98670 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.015799 B = 0.004609 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.887135 B = 6073.997242 C = 7476.902918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.016 3.984 3 C -0.204 4.204 4 C 0.016 3.984 5 C -0.773 4.773 6 S 2.715 3.285 7 N -1.238 6.238 8 O -1.002 7.002 9 O -0.992 6.992 10 C 0.302 3.698 11 N -0.731 5.731 12 C 0.142 3.858 13 C 0.049 3.951 14 C -0.126 4.126 15 C -0.124 4.124 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.024 3.976 19 N -0.903 5.903 20 Si 0.949 3.051 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.272 1.272 24 C -0.234 4.234 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.157 0.843 29 H 0.152 0.848 30 H 0.428 0.572 31 H 0.429 0.571 32 H 0.400 0.600 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.023 0.977 36 H 0.061 0.939 37 H 0.018 0.982 38 H 0.029 0.971 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.259 0.741 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.643 15.816 4.287 17.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.015 3.985 3 C -0.225 4.225 4 C -0.004 4.004 5 C -0.869 4.869 6 S 2.807 3.193 7 N -0.917 5.917 8 O -0.991 6.991 9 O -0.981 6.981 10 C 0.190 3.810 11 N -0.357 5.357 12 C 0.019 3.981 13 C 0.049 3.951 14 C -0.184 4.184 15 C -0.181 4.181 16 C -0.563 4.563 17 H 0.074 0.926 18 C -0.175 4.175 19 N -0.541 5.541 20 Si 0.776 3.224 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.197 1.197 24 C -0.257 4.257 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.174 0.826 29 H 0.170 0.830 30 H 0.261 0.739 31 H 0.259 0.741 32 H 0.239 0.761 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.068 0.932 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.040 15.836 3.440 17.294 hybrid contribution -0.225 -1.644 0.382 1.702 sum -6.265 14.192 3.822 15.977 Atomic orbital electron populations 1.21010 0.88527 1.04237 1.03985 1.20349 0.97664 0.92026 0.88499 1.21199 0.93500 0.98651 1.09156 1.20907 0.95345 0.95514 0.88633 1.29620 1.24373 0.98540 1.34379 1.00660 0.73304 0.72812 0.72567 1.52856 1.35212 1.75337 1.28260 1.93580 1.82509 1.65737 1.57278 1.93524 1.81681 1.36222 1.86672 1.17560 0.92628 0.84246 0.86594 1.45677 1.09298 1.03546 1.77213 1.21544 0.95040 0.81580 0.99974 1.18352 0.92358 0.91633 0.92777 1.21735 0.99930 0.99214 0.97558 1.21696 0.99838 0.99426 0.97177 1.21227 0.92879 0.90966 1.51191 0.92602 1.25532 0.95552 1.01696 0.94742 1.69936 1.06719 1.26843 1.50637 0.85762 0.78400 0.79720 0.78559 1.20231 1.21452 1.19732 1.20850 0.91603 0.99685 1.13601 0.88985 0.89141 0.90980 0.82581 0.83019 0.73947 0.74114 0.76126 0.93258 0.91890 0.95777 0.92005 0.96316 0.95149 0.92110 0.95227 0.93174 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 10.01 71.24 0.71 -1.06 16 2 C 0.02 0.35 5.88 -19.89 -0.12 0.24 16 3 C -0.20 -4.21 9.70 22.29 0.22 -3.99 16 4 C 0.02 0.38 9.54 22.25 0.21 0.59 16 5 C -0.77 -21.93 5.92 22.40 0.13 -21.80 16 6 S 2.72 77.54 5.55 -56.49 -0.31 77.22 16 7 N -1.24 -25.97 9.17 37.02 0.34 -25.63 16 8 O -1.00 -36.68 16.29 -128.00 -2.08 -38.76 16 9 O -0.99 -31.13 16.97 -128.00 -2.17 -33.31 16 10 C 0.30 9.44 6.61 38.21 0.25 9.70 16 11 N -0.73 -25.75 4.95 -339.40 -1.68 -27.43 16 12 C 0.14 5.53 3.74 86.38 0.32 5.85 16 13 C 0.05 2.27 0.50 -52.93 -0.03 2.25 16 14 C -0.13 -6.14 8.08 71.98 0.58 -5.56 16 15 C -0.12 -5.48 8.08 71.98 0.58 -4.90 16 16 C -0.52 -26.61 8.01 25.60 0.21 -26.40 16 17 H 0.06 2.77 7.74 -2.91 -0.02 2.75 16 18 C 0.02 1.26 5.15 84.65 0.44 1.70 16 19 N -0.90 -48.53 9.35 21.45 0.20 -48.33 16 20 Si 0.95 41.53 29.54 68.60 2.03 43.56 16 21 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 C -0.23 -6.53 8.96 22.40 0.20 -6.33 16 25 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.09 0.98 8.09 -2.38 -0.02 0.96 16 27 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 28 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 29 H 0.15 3.14 7.33 -2.92 -0.02 3.12 16 30 H 0.43 7.81 8.96 -96.74 -0.87 6.94 16 31 H 0.43 6.94 8.96 -96.75 -0.87 6.08 16 32 H 0.40 14.47 3.25 -92.71 -0.30 14.17 16 33 H 0.05 1.94 7.95 -2.39 -0.02 1.93 16 34 H 0.06 2.32 7.95 -2.39 -0.02 2.30 16 35 H 0.02 1.09 6.86 -2.39 -0.02 1.08 16 36 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 37 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 38 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 40 H 0.03 1.13 6.86 -2.39 -0.02 1.12 16 41 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 42 H 0.13 3.59 6.73 -2.91 -0.02 3.57 16 Total: -1.00 -66.12 345.04 -0.94 -67.06 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -0.97 Total: 35.35 kcal Atomic # 6 Polarization: -53.44 SS G_CDS: 3.71 Total: -49.73 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -1.14 Total: -101.39 kcal Atomic # 8 Polarization: -67.81 SS G_CDS: -4.26 Total: -72.07 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 77.54 SS G_CDS: -0.31 Total: 77.22 kcal Total: -66.12 -0.94 -67.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601174544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.692 kcal (2) G-P(sol) polarization free energy of solvation -66.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds