Wall clock time and date at job start Fri Apr 10 2020 22:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38161 * 120.02902 * 2 1 4 4 C 1.38244 * 120.05796 * 180.02562 * 3 2 1 5 5 C 1.38290 * 120.11289 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.05322 * 0.02562 * 5 4 3 7 7 C 1.38720 * 120.02817 * 180.25672 * 2 1 3 8 8 O 1.35902 * 120.05515 * 0.02562 * 7 2 1 9 9 C 1.42891 * 116.99831 * 180.25428 * 8 7 2 10 10 C 1.50708 * 109.47256 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99409 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00066 * 179.97438 * 10 9 8 13 13 C 1.39474 * 119.99835 * 175.11960 * 12 10 9 14 14 C 1.38598 * 119.57992 * 185.21077 * 13 12 10 15 15 C 1.40813 * 118.79403 * 180.02562 * 14 13 12 16 16 C 1.41538 * 120.99159 * 179.97438 * 15 14 13 17 17 H 1.08008 * 120.00001 * 149.42746 * 16 15 14 18 18 C 1.40031 * 120.00348 * 329.42031 * 16 15 14 19 19 N 1.30742 * 119.99944 * 167.74809 * 18 16 15 20 20 Si 1.86798 * 119.99959 * 347.74845 * 18 16 15 21 21 H 1.48495 * 109.47336 * 92.42113 * 20 18 16 22 22 H 1.48501 * 109.47172 * 212.42547 * 20 18 16 23 23 H 1.48508 * 109.47083 * 332.42309 * 20 18 16 24 24 C 1.41166 * 118.00709 * 359.97438 * 15 14 13 25 25 C 1.37591 * 119.02010 * 359.97438 * 24 15 14 26 26 N 1.32085 * 121.10407 * 359.73344 * 25 24 15 27 27 H 1.08993 * 109.46993 * 89.99376 * 1 2 3 28 28 H 1.09001 * 109.46621 * 209.99828 * 1 2 3 29 29 H 1.08999 * 109.46380 * 329.99200 * 1 2 3 30 30 H 1.08004 * 119.97295 * 0.02562 * 3 2 1 31 31 H 1.08002 * 119.94868 * 180.02562 * 4 3 2 32 32 H 1.07991 * 119.97767 * 180.02562 * 5 4 3 33 33 H 1.08003 * 120.03013 * 179.97438 * 6 5 4 34 34 H 1.09006 * 109.47132 * 299.99560 * 9 8 7 35 35 H 1.09004 * 109.47327 * 59.99847 * 9 8 7 36 36 H 0.96997 * 120.00278 * 355.12317 * 12 10 9 37 37 H 1.07996 * 120.60132 * 0.02562 * 14 13 12 38 38 H 0.97009 * 119.99747 * 180.02562 * 19 18 16 39 39 H 1.08001 * 120.49437 * 179.97438 * 24 15 14 40 40 H 1.08000 * 119.45001 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1969 -0.0005 5 6 4.2753 0.0009 -0.0005 6 6 3.5888 -1.1976 -0.0005 7 6 2.2012 -1.2010 -0.0054 8 8 1.5234 -2.3789 -0.0112 9 6 2.3034 -3.5762 -0.0109 10 6 1.3872 -4.7727 -0.0171 11 8 0.1846 -4.6155 -0.0209 12 7 1.9042 -6.0173 -0.0184 13 6 1.0599 -7.1232 0.0786 14 6 1.6051 -8.3929 0.1857 15 6 0.7374 -9.4977 0.2822 16 6 1.2439 -10.8147 0.3929 17 1 0.6864 -11.5639 0.9357 18 6 2.4676 -11.1466 -0.2014 19 7 3.0525 -12.2779 0.0944 20 14 3.2644 -9.9730 -1.4167 21 1 4.2004 -9.0737 -0.6954 22 1 4.0123 -10.7500 -2.4376 23 1 2.2139 -9.1622 -2.0834 24 6 -0.6527 -9.2524 0.2651 25 6 -1.1003 -7.9558 0.1565 26 7 -0.2529 -6.9460 0.0740 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3632 0.8899 0.5140 30 1 1.6585 2.1315 0.0004 31 1 4.1196 2.1329 -0.0001 32 1 5.3552 0.0040 -0.0005 33 1 4.1315 -2.1314 -0.0010 34 1 2.9360 -3.5979 -0.8983 35 1 2.9286 -3.6023 0.8817 36 1 2.8634 -6.1440 -0.0868 37 1 2.6760 -8.5324 0.1951 38 1 3.9004 -12.5076 -0.3170 39 1 -1.3545 -10.0702 0.3362 40 1 -2.1624 -7.7602 0.1424 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610791463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:55 Heat of formation + Delta-G solvation = -6.495945 kcal Electronic energy + Delta-G solvation = -24262.159207 eV Core-core repulsion = 20621.466327 eV Total energy + Delta-G solvation = -3640.692881 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.61973 -39.73759 -38.24909 -37.24648 -34.50462 -33.86847 -33.01667 -31.39801 -30.51753 -29.66923 -27.89329 -26.83244 -26.04803 -22.97475 -22.47130 -21.76668 -21.46232 -19.90196 -18.36428 -17.78846 -17.46800 -16.47354 -16.08525 -15.96515 -15.74218 -15.46563 -14.69026 -14.59379 -14.49046 -14.08619 -13.99965 -13.57245 -13.32561 -13.16046 -13.00523 -12.75736 -12.69356 -12.41429 -12.17359 -11.67853 -11.53429 -11.25739 -11.10054 -11.03944 -10.90728 -10.74073 -10.13176 -9.95002 -9.67306 -9.41296 -9.06601 -8.32397 -8.30077 -7.96936 -7.36439 -7.10006 -4.79934 1.08196 1.21493 2.16638 2.52516 2.55188 2.89997 2.99612 3.15183 3.20883 3.52371 3.65566 3.82317 4.46984 4.51089 4.56501 4.68874 4.79263 4.84752 4.91139 5.06998 5.14447 5.32289 5.36235 5.48473 5.62498 5.66118 5.67105 6.08308 6.10465 6.19233 6.23726 6.24717 6.31475 6.33114 6.48222 6.55474 6.88840 7.02504 7.11596 7.19459 7.48143 7.62753 7.91624 8.14357 8.33615 8.51235 8.59256 9.34875 9.91512 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.023289 B = 0.002877 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.978524 B = 9730.604582 C =10753.273857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.113 4.113 3 C -0.085 4.085 4 C -0.157 4.157 5 C -0.087 4.087 6 C -0.208 4.208 7 C 0.130 3.870 8 O -0.283 6.283 9 C 0.041 3.959 10 C 0.501 3.499 11 O -0.450 6.450 12 N -0.660 5.660 13 C 0.369 3.631 14 C -0.317 4.317 15 C 0.127 3.873 16 C -0.436 4.436 17 H 0.096 0.904 18 C 0.084 3.916 19 N -0.802 5.802 20 Si 0.917 3.083 21 H -0.271 1.271 22 H -0.290 1.290 23 H -0.244 1.244 24 C -0.268 4.268 25 C 0.129 3.871 26 N -0.555 5.555 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.409 0.591 37 H 0.109 0.891 38 H 0.288 0.712 39 H 0.112 0.888 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.243 20.403 -1.344 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.113 4.113 3 C -0.103 4.103 4 C -0.176 4.176 5 C -0.105 4.105 6 C -0.227 4.227 7 C 0.084 3.916 8 O -0.195 6.195 9 C -0.038 4.038 10 C 0.283 3.717 11 O -0.317 6.317 12 N -0.308 5.308 13 C 0.142 3.858 14 C -0.343 4.343 15 C 0.119 3.881 16 C -0.466 4.466 17 H 0.114 0.886 18 C -0.137 4.137 19 N -0.427 5.427 20 Si 0.745 3.255 21 H -0.197 1.197 22 H -0.218 1.218 23 H -0.168 1.168 24 C -0.291 4.291 25 C -0.023 4.023 26 N -0.275 5.275 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.244 0.756 37 H 0.127 0.873 38 H 0.099 0.901 39 H 0.130 0.870 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.956 21.194 -1.397 21.605 hybrid contribution 1.842 -0.774 -0.432 2.044 sum 5.798 20.420 -1.829 21.306 Atomic orbital electron populations 1.20651 0.90234 1.03075 1.02568 1.19327 0.96835 0.90167 1.04989 1.20896 0.94129 0.96726 0.98533 1.21036 0.94225 0.98060 1.04245 1.20915 0.99759 0.91846 0.97971 1.21280 0.92872 0.99675 1.08866 1.18925 0.90444 0.85609 0.96627 1.86160 1.33995 1.11155 1.88234 1.22522 0.93916 0.83672 1.03672 1.20006 0.89462 0.83365 0.78859 1.90843 1.14206 1.84536 1.42076 1.43306 1.10084 1.04324 1.73082 1.17927 0.88609 0.84052 0.95207 1.21229 0.99225 0.91339 1.22488 1.17704 0.91234 0.92676 0.86501 1.19512 1.02901 0.95080 1.29153 0.88586 1.26194 0.95543 0.95663 0.96256 1.69611 1.15195 1.22195 1.35656 0.86231 0.79586 0.79833 0.79894 1.19706 1.21802 1.16769 1.21945 0.95796 0.96937 1.14466 1.21923 0.97526 0.88212 0.94658 1.67305 1.00821 1.34868 1.24466 0.91254 0.90545 0.91779 0.85415 0.85992 0.85845 0.85362 0.89135 0.89008 0.75636 0.87328 0.90147 0.87023 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.79 36.01 0.35 -0.82 16 2 C -0.11 -1.29 5.89 -104.47 -0.62 -1.91 16 3 C -0.08 -0.79 9.70 -39.61 -0.38 -1.17 16 4 C -0.16 -1.35 10.04 -39.56 -0.40 -1.75 16 5 C -0.09 -0.77 10.04 -39.60 -0.40 -1.17 16 6 C -0.21 -2.12 9.04 -39.43 -0.36 -2.48 16 7 C 0.13 1.61 6.66 -39.21 -0.26 1.35 16 8 O -0.28 -4.11 8.72 -39.34 -0.34 -4.45 16 9 C 0.04 0.51 5.22 36.01 0.19 0.70 16 10 C 0.50 8.74 7.87 -10.98 -0.09 8.66 16 11 O -0.45 -9.99 14.75 -14.36 -0.21 -10.20 16 12 N -0.66 -11.64 5.39 -11.49 -0.06 -11.71 16 13 C 0.37 8.25 7.42 -154.70 -1.15 7.11 16 14 C -0.32 -7.34 6.94 -38.48 -0.27 -7.60 16 15 C 0.13 3.14 5.16 -106.56 -0.55 2.59 16 16 C -0.44 -11.27 9.67 -37.65 -0.36 -11.63 16 17 H 0.10 2.59 8.06 -52.48 -0.42 2.17 16 18 C 0.08 2.08 5.48 -17.34 -0.10 1.99 16 19 N -0.80 -20.33 13.92 55.55 0.77 -19.56 16 20 Si 0.92 19.57 24.43 -169.99 -4.15 15.41 16 21 H -0.27 -5.34 6.67 56.52 0.38 -4.96 16 22 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.24 -5.47 6.65 56.52 0.38 -5.09 16 24 C -0.27 -6.14 9.90 -38.71 -0.38 -6.52 16 25 C 0.13 2.87 11.15 -17.68 -0.20 2.67 16 26 N -0.56 -13.28 7.85 -12.52 -0.10 -13.38 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.97 7.54 -51.93 -0.39 0.58 16 29 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 31 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.13 1.05 6.30 -52.48 -0.33 0.72 16 34 H 0.09 0.86 7.66 -51.93 -0.40 0.46 16 35 H 0.09 0.88 7.66 -51.93 -0.40 0.49 16 36 H 0.41 5.51 8.70 -40.82 -0.36 5.15 16 37 H 0.11 2.38 4.43 -52.49 -0.23 2.15 16 38 H 0.29 6.57 8.29 -40.82 -0.34 6.23 16 39 H 0.11 2.35 8.06 -52.49 -0.42 1.92 16 40 H 0.13 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 340.62 15.07 5.13 5.13 Total: -1.00 -32.26 340.62 -8.59 -40.85 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -4.67 Total: 7.89 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -4.96 Total: -9.99 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.61 Total: -44.64 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.55 Total: -14.65 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.15 Total: 15.41 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.26 -8.59 -40.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610791463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.353 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds