Wall clock time and date at job start Fri Apr 10 2020 22:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38161 * 120.02902 * 2 1 4 4 C 1.38244 * 120.05796 * 180.02562 * 3 2 1 5 5 C 1.38290 * 120.11289 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.05322 * 0.02562 * 5 4 3 7 7 C 1.38720 * 120.02817 * 180.25672 * 2 1 3 8 8 O 1.35902 * 120.05515 * 0.02562 * 7 2 1 9 9 C 1.42891 * 116.99831 * 180.25428 * 8 7 2 10 10 C 1.50708 * 109.47256 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99409 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00066 * 179.97438 * 10 9 8 13 13 C 1.39474 * 119.99835 * 175.11960 * 12 10 9 14 14 C 1.38598 * 119.57992 * 185.21077 * 13 12 10 15 15 C 1.40813 * 118.79403 * 180.02562 * 14 13 12 16 16 C 1.41538 * 120.99159 * 179.97438 * 15 14 13 17 17 H 1.08008 * 120.00001 * 149.42746 * 16 15 14 18 18 C 1.40031 * 120.00348 * 329.42031 * 16 15 14 19 19 N 1.30742 * 119.99944 * 167.74809 * 18 16 15 20 20 Si 1.86798 * 119.99959 * 347.74845 * 18 16 15 21 21 H 1.48495 * 109.47336 * 92.42113 * 20 18 16 22 22 H 1.48501 * 109.47172 * 212.42547 * 20 18 16 23 23 H 1.48508 * 109.47083 * 332.42309 * 20 18 16 24 24 C 1.41166 * 118.00709 * 359.97438 * 15 14 13 25 25 C 1.37591 * 119.02010 * 359.97438 * 24 15 14 26 26 N 1.32085 * 121.10407 * 359.73344 * 25 24 15 27 27 H 1.08993 * 109.46993 * 89.99376 * 1 2 3 28 28 H 1.09001 * 109.46621 * 209.99828 * 1 2 3 29 29 H 1.08999 * 109.46380 * 329.99200 * 1 2 3 30 30 H 1.08004 * 119.97295 * 0.02562 * 3 2 1 31 31 H 1.08002 * 119.94868 * 180.02562 * 4 3 2 32 32 H 1.07991 * 119.97767 * 180.02562 * 5 4 3 33 33 H 1.08003 * 120.03013 * 179.97438 * 6 5 4 34 34 H 1.09006 * 109.47132 * 299.99560 * 9 8 7 35 35 H 1.09004 * 109.47327 * 59.99847 * 9 8 7 36 36 H 0.96997 * 120.00278 * 355.12317 * 12 10 9 37 37 H 1.07996 * 120.60132 * 0.02562 * 14 13 12 38 38 H 0.97009 * 119.99747 * 180.02562 * 19 18 16 39 39 H 1.08001 * 120.49437 * 179.97438 * 24 15 14 40 40 H 1.08000 * 119.45001 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1969 -0.0005 5 6 4.2753 0.0009 -0.0005 6 6 3.5888 -1.1976 -0.0005 7 6 2.2012 -1.2010 -0.0054 8 8 1.5234 -2.3789 -0.0112 9 6 2.3034 -3.5762 -0.0109 10 6 1.3872 -4.7727 -0.0171 11 8 0.1846 -4.6155 -0.0209 12 7 1.9042 -6.0173 -0.0184 13 6 1.0599 -7.1232 0.0786 14 6 1.6051 -8.3929 0.1857 15 6 0.7374 -9.4977 0.2822 16 6 1.2439 -10.8147 0.3929 17 1 0.6864 -11.5639 0.9357 18 6 2.4676 -11.1466 -0.2014 19 7 3.0525 -12.2779 0.0944 20 14 3.2644 -9.9730 -1.4167 21 1 4.2004 -9.0737 -0.6954 22 1 4.0123 -10.7500 -2.4376 23 1 2.2139 -9.1622 -2.0834 24 6 -0.6527 -9.2524 0.2651 25 6 -1.1003 -7.9558 0.1565 26 7 -0.2529 -6.9460 0.0740 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3632 0.8899 0.5140 30 1 1.6585 2.1315 0.0004 31 1 4.1196 2.1329 -0.0001 32 1 5.3552 0.0040 -0.0005 33 1 4.1315 -2.1314 -0.0010 34 1 2.9360 -3.5979 -0.8983 35 1 2.9286 -3.6023 0.8817 36 1 2.8634 -6.1440 -0.0868 37 1 2.6760 -8.5324 0.1951 38 1 3.9004 -12.5076 -0.3170 39 1 -1.3545 -10.0702 0.3362 40 1 -2.1624 -7.7602 0.1424 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610791463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:55 Heat of formation + Delta-G solvation = -25.734425 kcal Electronic energy + Delta-G solvation = -24262.993450 eV Core-core repulsion = 20621.466327 eV Total energy + Delta-G solvation = -3641.527124 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.71085 -41.03108 -39.73533 -38.22747 -36.18228 -35.61557 -33.75598 -33.25683 -31.57097 -30.86464 -29.12304 -27.92893 -27.59572 -24.25932 -24.07987 -22.77144 -22.48375 -21.43833 -19.65657 -19.08591 -18.88156 -17.60294 -17.48583 -17.30548 -16.83284 -16.48252 -16.37605 -15.88462 -15.86376 -15.31678 -15.20098 -14.79237 -14.76732 -14.65896 -14.19271 -14.00558 -13.72397 -13.48108 -13.17462 -12.99623 -12.77299 -12.67697 -12.64068 -12.23497 -12.08450 -11.86619 -11.80761 -11.59177 -11.31647 -11.03670 -10.17165 -9.76028 -9.72960 -9.10791 -9.06063 -8.96182 -6.75129 0.38796 0.46793 0.48828 0.72923 1.22050 1.36869 1.41108 1.48372 1.65654 2.08986 2.54619 2.66210 2.82189 3.36499 3.47652 3.81598 3.94517 3.96727 4.03763 4.06119 4.22698 4.40408 4.43031 4.45275 4.56452 4.61642 4.66527 4.72051 4.76561 4.78060 4.99231 5.09615 5.24762 5.31064 5.40950 5.44730 5.52681 5.61747 5.65879 5.85317 5.99161 6.16651 6.33185 6.41249 6.49773 6.66437 7.08485 7.62035 8.10384 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.023289 B = 0.002877 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.978524 B = 9730.604582 C =10753.273857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.137 4.137 3 C -0.088 4.088 4 C -0.157 4.157 5 C -0.090 4.090 6 C -0.212 4.212 7 C 0.101 3.899 8 O -0.316 6.316 9 C 0.051 3.949 10 C 0.499 3.501 11 O -0.504 6.504 12 N -0.649 5.649 13 C 0.366 3.634 14 C -0.321 4.321 15 C 0.112 3.888 16 C -0.467 4.467 17 H 0.065 0.935 18 C 0.049 3.951 19 N -0.836 5.836 20 Si 0.968 3.032 21 H -0.238 1.238 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.280 4.280 25 C 0.128 3.872 26 N -0.576 5.576 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.430 0.570 37 H 0.123 0.877 38 H 0.299 0.701 39 H 0.122 0.878 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.886 23.366 -1.985 24.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.138 4.138 3 C -0.106 4.106 4 C -0.175 4.175 5 C -0.108 4.108 6 C -0.231 4.231 7 C 0.056 3.944 8 O -0.229 6.229 9 C -0.027 4.027 10 C 0.284 3.716 11 O -0.375 6.375 12 N -0.299 5.299 13 C 0.137 3.863 14 C -0.346 4.346 15 C 0.103 3.897 16 C -0.498 4.498 17 H 0.084 0.916 18 C -0.168 4.168 19 N -0.462 5.462 20 Si 0.791 3.209 21 H -0.162 1.162 22 H -0.205 1.205 23 H -0.186 1.186 24 C -0.303 4.303 25 C -0.024 4.024 26 N -0.296 5.296 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.167 0.833 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.167 0.833 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.269 0.731 37 H 0.140 0.860 38 H 0.109 0.891 39 H 0.140 0.860 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.658 24.162 -2.022 25.144 hybrid contribution 0.947 -1.586 -0.195 1.858 sum 7.606 22.576 -2.218 23.926 Atomic orbital electron populations 1.20597 0.90675 1.02624 1.02288 1.19588 0.96998 0.91031 1.06197 1.21189 0.94852 0.96731 0.97828 1.21442 0.94032 0.99321 1.02668 1.21319 1.01229 0.91406 0.96812 1.21561 0.91951 1.01274 1.08286 1.19204 0.91591 0.84956 0.98642 1.86102 1.35567 1.12197 1.89078 1.22537 0.92369 0.80941 1.06837 1.20950 0.89570 0.84283 0.76761 1.90818 1.16911 1.85331 1.44437 1.43287 1.10761 1.03496 1.72362 1.18181 0.88669 0.85367 0.94057 1.21328 0.99751 0.91243 1.22324 1.17906 0.92344 0.92724 0.86676 1.19484 1.04033 0.95291 1.30980 0.91634 1.26896 0.95564 0.97095 0.97253 1.69631 1.16155 1.23516 1.36900 0.85466 0.78907 0.78405 0.78090 1.16214 1.20513 1.18615 1.22135 0.95636 0.97771 1.14743 1.22373 0.98877 0.87686 0.93454 1.67449 1.01854 1.35504 1.24759 0.91504 0.93346 0.89782 0.83345 0.83333 0.83139 0.83326 0.85603 0.85740 0.73146 0.85973 0.89056 0.86023 0.82340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.28 9.79 71.24 0.70 -1.58 16 2 C -0.14 -3.01 5.89 -19.77 -0.12 -3.13 16 3 C -0.09 -1.43 9.70 22.25 0.22 -1.22 16 4 C -0.16 -2.13 10.04 22.28 0.22 -1.91 16 5 C -0.09 -1.25 10.04 22.26 0.22 -1.02 16 6 C -0.21 -3.65 9.04 22.37 0.20 -3.45 16 7 C 0.10 2.35 6.66 22.51 0.15 2.50 16 8 O -0.32 -8.87 8.72 -73.40 -0.64 -9.51 16 9 C 0.05 1.12 5.22 71.24 0.37 1.50 16 10 C 0.50 16.70 7.87 87.66 0.69 17.39 16 11 O -0.50 -22.48 14.75 16.00 0.24 -22.24 16 12 N -0.65 -21.54 5.39 -308.65 -1.66 -23.20 16 13 C 0.37 15.97 7.42 132.75 0.98 16.96 16 14 C -0.32 -14.56 6.94 22.99 0.16 -14.40 16 15 C 0.11 5.58 5.16 -21.12 -0.11 5.47 16 16 C -0.47 -24.94 9.67 23.52 0.23 -24.71 16 17 H 0.07 3.76 8.06 -2.91 -0.02 3.73 16 18 C 0.05 2.45 5.48 85.29 0.47 2.92 16 19 N -0.84 -42.91 13.92 21.84 0.30 -42.61 16 20 Si 0.97 39.06 24.43 68.60 1.68 40.73 16 21 H -0.24 -8.28 6.67 99.48 0.66 -7.62 16 22 H -0.28 -10.62 7.11 99.48 0.71 -9.92 16 23 H -0.26 -11.27 6.65 99.48 0.66 -10.60 16 24 C -0.28 -12.97 9.90 22.84 0.23 -12.74 16 25 C 0.13 5.69 11.15 84.50 0.94 6.63 16 26 N -0.58 -27.34 7.85 -193.53 -1.52 -28.86 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.30 7.54 -2.39 -0.02 1.28 16 29 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 30 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 31 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 32 H 0.15 1.23 8.06 -2.92 -0.02 1.21 16 33 H 0.15 1.78 6.30 -2.91 -0.02 1.77 16 34 H 0.13 1.87 7.66 -2.38 -0.02 1.85 16 35 H 0.13 1.92 7.66 -2.38 -0.02 1.90 16 36 H 0.43 10.12 8.70 -92.71 -0.81 9.32 16 37 H 0.12 5.09 4.43 -2.91 -0.01 5.08 16 38 H 0.30 13.60 8.29 -92.70 -0.77 12.83 16 39 H 0.12 5.24 8.06 -2.91 -0.02 5.21 16 40 H 0.16 5.97 8.06 -2.91 -0.02 5.94 16 Total: -1.00 -73.09 340.62 4.14 -68.95 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.19 Total: 27.54 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 5.56 Total: -10.79 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -2.88 Total: -94.67 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.40 Total: -31.76 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 1.68 Total: 40.73 kcal Total: -73.09 4.14 -68.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610791463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.217 kcal (2) G-P(sol) polarization free energy of solvation -73.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds