Wall clock time and date at job start Fri Apr 10 2020 22:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38669 * 120.79068 * 2 1 4 4 C 1.38180 * 119.16209 * 180.22817 * 3 2 1 5 5 N 1.31885 * 120.76564 * 359.78973 * 4 3 2 6 6 C 1.31847 * 121.72736 * 359.97438 * 5 4 3 7 7 C 1.38236 * 120.76354 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.41868 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47289 * 144.99711 * 8 7 6 10 10 C 1.53000 * 109.47313 * 264.99683 * 8 7 6 11 11 N 1.46506 * 109.47369 * 25.00187 * 8 7 6 12 12 S 1.65600 * 119.99871 * 145.00124 * 11 8 7 13 13 O 1.42101 * 104.27882 * 308.92501 * 12 11 8 14 14 O 1.42102 * 104.27187 * 181.06876 * 12 11 8 15 15 C 1.81399 * 104.45301 * 64.99838 * 12 11 8 16 16 C 1.52996 * 109.47218 * 179.97438 * 15 12 11 17 17 C 1.52996 * 109.47168 * 179.97438 * 16 15 12 18 18 C 1.50704 * 109.47256 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99847 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00018 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99725 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 119.99954 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47290 * 90.00066 * 22 20 18 24 24 H 1.48504 * 109.47048 * 209.99517 * 22 20 18 25 25 H 1.48498 * 109.47273 * 330.00162 * 22 20 18 26 26 H 1.08990 * 109.47581 * 270.24802 * 1 2 3 27 27 H 1.09004 * 109.46920 * 30.25528 * 1 2 3 28 28 H 1.09002 * 109.47268 * 150.24595 * 1 2 3 29 29 H 1.07998 * 120.42085 * 0.02562 * 3 2 1 30 30 H 1.07996 * 119.61658 * 179.76830 * 4 3 2 31 31 H 1.07998 * 119.62202 * 180.02562 * 6 5 4 32 32 H 1.08992 * 109.47040 * 300.00437 * 10 8 7 33 33 H 1.09007 * 109.46755 * 60.00455 * 10 8 7 34 34 H 1.08997 * 109.47504 * 179.97438 * 10 8 7 35 35 H 0.97002 * 119.99684 * 324.99583 * 11 8 7 36 36 H 1.09001 * 109.46838 * 300.00058 * 15 12 11 37 37 H 1.08998 * 109.46934 * 59.99858 * 15 12 11 38 38 H 1.09004 * 109.47227 * 300.00383 * 16 15 12 39 39 H 1.09001 * 109.46834 * 59.99744 * 16 15 12 40 40 H 1.08994 * 109.47198 * 300.00064 * 17 16 15 41 41 H 1.09007 * 109.46582 * 60.00331 * 17 16 15 42 42 H 0.97001 * 119.99731 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1520 -0.0048 5 7 4.2403 0.0000 -0.0052 6 6 3.5984 -1.1516 -0.0005 7 6 2.2166 -1.1909 0.0055 8 6 1.4908 -2.5116 0.0113 9 1 0.5807 -2.4234 0.6045 10 6 1.1288 -2.9010 -1.4233 11 7 2.3552 -3.5413 0.5935 12 16 1.6970 -4.7543 1.5088 13 8 0.8901 -4.0760 2.4617 14 8 2.8146 -5.5318 1.9160 15 6 0.6620 -5.6872 0.3473 16 6 -0.0085 -6.8498 1.0819 17 6 -0.8819 -7.6362 0.1024 18 6 -1.5418 -8.7817 0.8258 19 1 -1.3570 -8.9334 1.8791 20 6 -2.3814 -9.6361 0.1431 21 7 -2.9569 -10.6361 0.7744 22 14 -2.7005 -9.3741 -1.6786 23 1 -1.6957 -10.1282 -2.4706 24 1 -4.0627 -9.8589 -2.0173 25 1 -2.5966 -7.9273 -1.9963 26 1 -0.3634 0.0044 1.0275 27 1 -0.3633 0.8877 -0.5178 28 1 -0.3634 -0.8922 -0.5100 29 1 1.6968 2.1377 0.0004 30 1 4.1583 2.0753 -0.0086 31 1 4.1585 -2.0750 -0.0006 32 1 0.4857 -2.1349 -1.8564 33 1 2.0390 -2.9893 -2.0165 34 1 0.6042 -3.8564 -1.4192 35 1 3.3130 -3.5125 0.4428 36 1 -0.1023 -5.0296 -0.0672 37 1 1.2823 -6.0771 -0.4597 38 1 0.7561 -7.5071 1.4961 39 1 -0.6287 -6.4601 1.8891 40 1 -1.6464 -6.9786 -0.3113 41 1 -0.2619 -8.0258 -0.7051 42 1 -3.5479 -11.2370 0.2942 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611292264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:57 Heat of formation + Delta-G solvation = -80.812654 kcal Electronic energy + Delta-G solvation = -23731.055073 eV Core-core repulsion = 20222.583529 eV Total energy + Delta-G solvation = -3508.471544 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.46669 -38.30319 -37.63455 -37.06924 -36.50340 -34.83614 -34.24746 -31.99719 -30.47433 -29.96484 -28.74187 -25.54271 -25.10625 -23.35309 -22.24304 -22.16427 -20.44595 -18.98842 -18.87859 -18.12299 -17.35340 -17.15537 -17.03511 -16.44233 -16.18944 -15.86479 -15.56711 -15.43334 -14.87002 -14.66252 -14.39212 -14.12161 -13.76355 -13.66321 -13.55933 -13.48460 -13.39147 -13.24861 -13.20508 -13.17429 -12.91637 -12.68772 -12.53087 -12.47019 -11.96500 -11.82840 -11.62064 -11.40334 -11.36194 -10.76118 -10.67463 -10.39074 -10.31593 -9.91990 -8.28435 -6.34457 -0.79251 0.13451 0.29387 1.38575 1.41059 1.52617 1.70776 2.37909 2.73183 2.80562 3.07020 3.17364 3.37661 3.66692 3.68133 3.82155 3.89718 3.91499 3.97452 4.13187 4.24411 4.34563 4.41631 4.56108 4.61317 4.62855 4.75298 4.80458 4.84385 4.92482 4.94636 4.97833 5.19052 5.21368 5.33327 5.36574 5.43333 5.48558 5.64349 5.78168 5.98254 6.26769 6.74270 7.01978 7.30229 8.88655 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.022548 B = 0.003097 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.502403 B = 9038.850178 C = 9631.683989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.040 4.040 3 C -0.169 4.169 4 C 0.085 3.915 5 N -0.515 5.515 6 C 0.092 3.908 7 C -0.146 4.146 8 C 0.185 3.815 9 H 0.106 0.894 10 C -0.179 4.179 11 N -1.107 6.107 12 S 2.619 3.381 13 O -0.991 6.991 14 O -0.993 6.993 15 C -0.608 4.608 16 C -0.104 4.104 17 C -0.004 4.004 18 C -0.544 4.544 19 H 0.028 0.972 20 C -0.001 4.001 21 N -0.954 5.954 22 Si 0.956 3.044 23 H -0.266 1.266 24 H -0.287 1.287 25 H -0.233 1.233 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.164 0.836 30 H 0.177 0.823 31 H 0.159 0.841 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.423 0.577 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.036 0.964 41 H 0.032 0.968 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.631 27.166 -8.893 30.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.048 4.048 3 C -0.188 4.188 4 C -0.071 4.071 5 N -0.224 5.224 6 C -0.065 4.065 7 C -0.149 4.149 8 C 0.077 3.923 9 H 0.124 0.876 10 C -0.237 4.237 11 N -0.869 5.869 12 S 2.716 3.284 13 O -0.980 6.980 14 O -0.984 6.984 15 C -0.740 4.740 16 C -0.143 4.143 17 C -0.043 4.043 18 C -0.582 4.582 19 H 0.046 0.954 20 C -0.197 4.197 21 N -0.595 5.595 22 Si 0.778 3.222 23 H -0.191 1.191 24 H -0.214 1.214 25 H -0.156 1.156 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.182 0.818 30 H 0.194 0.806 31 H 0.176 0.824 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.261 0.739 36 H 0.178 0.822 37 H 0.179 0.821 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.434 26.915 -7.927 29.935 hybrid contribution -0.873 -0.740 -0.725 1.354 sum 9.562 26.175 -8.653 29.179 Atomic orbital electron populations 1.21079 0.88513 1.05133 1.03948 1.20506 0.98126 0.92086 0.94104 1.22359 0.95325 0.99561 1.01586 1.23245 0.92778 0.96488 0.94603 1.67698 1.42108 0.99238 1.13405 1.22678 0.91593 0.96586 0.95673 1.20806 0.95271 0.95422 1.03440 1.19823 0.92479 0.83529 0.96444 0.87606 1.22538 1.03634 1.03681 0.93893 1.55552 1.18552 1.41062 1.71713 1.04496 0.74510 0.73919 0.75497 1.93540 1.72204 1.73031 1.59272 1.93548 1.51439 1.71821 1.81556 1.30623 1.15669 1.11188 1.16535 1.21187 0.99270 0.94974 0.98910 1.19504 0.95294 0.94186 0.95305 1.21579 1.27602 1.12321 0.96673 0.95356 1.26142 0.94957 0.94243 1.04408 1.70095 1.32318 1.17896 1.39158 0.85581 0.77481 0.80775 0.78343 1.19149 1.21353 1.15623 0.89936 0.88761 0.89764 0.81835 0.80570 0.82357 0.89291 0.90724 0.90181 0.73919 0.82208 0.82116 0.92075 0.91805 0.94562 0.95006 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 9.31 71.24 0.66 -0.54 16 2 C -0.04 -0.55 5.92 -19.67 -0.12 -0.66 16 3 C -0.17 -2.04 9.82 22.36 0.22 -1.82 16 4 C 0.08 1.26 11.18 84.67 0.95 2.21 16 5 N -0.52 -10.34 10.36 -195.85 -2.03 -12.37 16 6 C 0.09 1.69 10.46 84.69 0.89 2.58 16 7 C -0.15 -2.39 5.07 -19.77 -0.10 -2.49 16 8 C 0.18 2.82 2.35 44.24 0.10 2.92 16 9 H 0.11 1.64 6.45 -2.39 -0.02 1.62 16 10 C -0.18 -1.93 9.30 71.98 0.67 -1.26 16 11 N -1.11 -19.80 5.23 -172.52 -0.90 -20.70 16 12 S 2.62 68.15 5.44 -56.49 -0.31 67.85 16 13 O -0.99 -32.30 17.39 -127.65 -2.22 -34.52 16 14 O -0.99 -32.95 18.08 -127.65 -2.31 -35.26 16 15 C -0.61 -14.57 5.22 71.98 0.38 -14.19 16 16 C -0.10 -3.80 5.16 30.59 0.16 -3.64 16 17 C 0.00 -0.19 4.04 29.85 0.12 -0.07 16 18 C -0.54 -30.97 9.66 25.60 0.25 -30.72 16 19 H 0.03 1.80 7.99 -2.91 -0.02 1.77 16 20 C 0.00 -0.06 5.47 84.65 0.46 0.40 16 21 N -0.95 -59.82 13.96 21.45 0.30 -59.53 16 22 Si 0.96 42.19 27.47 68.60 1.88 44.08 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 24 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.23 -9.02 6.54 99.48 0.65 -8.37 16 26 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.09 0.51 8.10 -2.39 -0.02 0.49 16 28 H 0.08 0.66 5.61 -2.39 -0.01 0.65 16 29 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 30 H 0.18 1.61 8.06 -2.91 -0.02 1.58 16 31 H 0.16 2.43 6.09 -2.91 -0.02 2.42 16 32 H 0.09 0.72 6.94 -2.39 -0.02 0.70 16 33 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.08 0.78 5.78 -2.39 -0.01 0.76 16 35 H 0.42 6.28 6.55 -96.74 -0.63 5.65 16 36 H 0.16 2.84 6.77 -2.39 -0.02 2.83 16 37 H 0.16 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 39 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.04 1.46 7.20 -2.39 -0.02 1.44 16 41 H 0.03 1.28 7.57 -2.38 -0.02 1.27 16 42 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -81.99 351.84 -0.60 -82.59 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.35 Total: 15.13 kcal Atomic # 6 Polarization: -51.92 SS G_CDS: 4.64 Total: -47.28 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -2.63 Total: -92.60 kcal Atomic # 8 Polarization: -65.24 SS G_CDS: -4.53 Total: -69.77 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.88 Total: 44.08 kcal Atomic # 16 Polarization: 68.15 SS G_CDS: -0.31 Total: 67.85 kcal Total: -81.99 -0.60 -82.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611292264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.782 kcal (2) G-P(sol) polarization free energy of solvation -81.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds