Wall clock time and date at job start Fri Apr 10 2020 22:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38669 * 120.79114 * 2 1 4 4 C 1.38176 * 119.16451 * 180.02562 * 3 2 1 5 5 N 1.31882 * 120.76777 * 359.97399 * 4 3 2 6 6 C 1.31856 * 121.72242 * 359.77625 * 5 4 3 7 7 C 1.38231 * 120.76353 * 0.48985 * 6 5 4 8 8 C 1.50695 * 120.41769 * 179.77374 * 7 6 5 9 9 H 1.09008 * 109.47341 * 219.71928 * 8 7 6 10 10 C 1.52999 * 109.47163 * 99.72389 * 8 7 6 11 11 N 1.46497 * 109.47423 * 339.72018 * 8 7 6 12 12 S 1.65599 * 120.00110 * 214.99853 * 11 8 7 13 13 O 1.42105 * 104.27797 * 181.07392 * 12 11 8 14 14 O 1.42101 * 104.27901 * 308.93100 * 12 11 8 15 15 C 1.81397 * 104.44825 * 65.00280 * 12 11 8 16 16 C 1.53009 * 109.47235 * 179.97438 * 15 12 11 17 17 C 1.52995 * 109.46990 * 179.97438 * 16 15 12 18 18 C 1.50700 * 109.47073 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99821 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00285 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00002 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00089 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47293 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46799 * 120.00203 * 22 20 18 25 25 H 1.48493 * 109.47424 * 240.00186 * 22 20 18 26 26 H 1.09001 * 109.47200 * 269.98337 * 1 2 3 27 27 H 1.09003 * 109.47039 * 29.97870 * 1 2 3 28 28 H 1.09000 * 109.47248 * 149.97677 * 1 2 3 29 29 H 1.07998 * 120.41678 * 359.97438 * 3 2 1 30 30 H 1.08002 * 119.61819 * 179.97438 * 4 3 2 31 31 H 1.08000 * 119.62206 * 180.24475 * 6 5 4 32 32 H 1.08994 * 109.47130 * 299.99762 * 10 8 7 33 33 H 1.08998 * 109.47041 * 59.99885 * 10 8 7 34 34 H 1.09000 * 109.47228 * 179.97438 * 10 8 7 35 35 H 0.96999 * 119.99844 * 35.00578 * 11 8 7 36 36 H 1.09004 * 109.47032 * 299.99803 * 15 12 11 37 37 H 1.09000 * 109.47124 * 60.00075 * 15 12 11 38 38 H 1.08995 * 109.47216 * 300.00010 * 16 15 12 39 39 H 1.09000 * 109.46805 * 60.00123 * 16 15 12 40 40 H 1.08995 * 109.47375 * 300.00190 * 17 16 15 41 41 H 1.09000 * 109.47020 * 60.00531 * 17 16 15 42 42 H 0.96996 * 119.99810 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2403 0.0001 -0.0005 6 6 3.5983 -1.1516 0.0044 7 6 2.2166 -1.1909 -0.0005 8 6 1.4908 -2.5116 0.0001 9 1 0.6253 -2.4509 -0.6599 10 6 1.0266 -2.8379 1.4210 11 7 2.3927 -3.5646 -0.4730 12 16 1.7995 -4.8178 -1.3786 13 8 2.9331 -5.6378 -1.6273 14 8 0.6959 -5.3023 -0.6260 15 6 1.2296 -4.0369 -2.9135 16 6 0.6531 -5.1047 -3.8454 17 6 0.1718 -4.4460 -5.1397 18 6 -0.3954 -5.4978 -6.0579 19 1 -0.4115 -6.5325 -5.7489 20 6 -0.8949 -5.1390 -7.2919 21 7 -0.8758 -3.8789 -7.6680 22 14 -1.5973 -6.4428 -8.4303 23 1 -1.5024 -7.7732 -7.7774 24 1 -3.0211 -6.1336 -8.7181 25 1 -0.8276 -6.4581 -9.7001 26 1 -0.3634 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 1.6967 2.1377 -0.0004 30 1 4.1583 2.0754 -0.0010 31 1 4.1584 -2.0750 0.0082 32 1 1.8919 -2.8986 2.0809 33 1 0.3556 -2.0544 1.7729 34 1 0.5013 -3.7929 1.4213 35 1 3.3373 -3.5279 -0.2557 36 1 0.4590 -3.3013 -2.6825 37 1 2.0687 -3.5427 -3.4030 38 1 1.4238 -5.8400 -4.0763 39 1 -0.1860 -5.5993 -3.3561 40 1 -0.5991 -3.7110 -4.9085 41 1 1.0106 -3.9511 -5.6292 42 1 -1.2269 -3.6265 -8.5363 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611292265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:00 Heat of formation + Delta-G solvation = -56.686489 kcal Electronic energy + Delta-G solvation = -23790.952177 eV Core-core repulsion = 20283.526822 eV Total energy + Delta-G solvation = -3507.425355 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.80468 -37.18370 -36.68099 -35.78911 -34.70928 -34.18876 -32.21513 -31.23667 -29.55890 -28.17308 -27.85047 -24.57387 -23.76340 -22.69500 -21.50504 -20.70858 -19.30712 -17.85810 -17.33501 -16.63467 -16.44260 -16.16439 -15.75433 -15.38236 -15.08060 -14.77688 -14.50028 -14.21388 -13.87524 -13.70764 -13.20377 -12.98273 -12.92275 -12.65724 -12.56834 -12.32003 -12.12270 -11.97237 -11.88376 -11.83028 -11.78042 -11.31344 -11.22233 -10.95282 -10.86526 -10.47380 -10.03099 -9.98103 -9.71819 -9.66632 -9.38660 -9.24106 -9.10385 -8.43129 -6.07799 -4.10869 0.39039 0.79999 0.95111 2.72626 3.28072 3.35733 3.40595 3.48446 3.83902 4.05660 4.27538 4.34089 4.40403 4.40980 4.53185 4.57373 4.76280 4.93555 5.00402 5.11418 5.14586 5.16882 5.23988 5.27955 5.29145 5.43571 5.51129 5.59763 5.73993 5.82367 5.87341 6.00969 6.06628 6.22947 6.40383 6.41065 6.76266 6.84217 7.54538 7.63939 7.70012 7.90231 8.30482 8.95616 9.54109 11.03450 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.015559 B = 0.003352 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.191271 B = 8352.094806 C = 9224.989848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.032 4.032 3 C -0.170 4.170 4 C 0.097 3.903 5 N -0.485 5.485 6 C 0.111 3.889 7 C -0.143 4.143 8 C 0.197 3.803 9 H 0.098 0.902 10 C -0.167 4.167 11 N -1.121 6.121 12 S 2.599 3.401 13 O -0.960 6.960 14 O -0.957 6.957 15 C -0.609 4.609 16 C -0.105 4.105 17 C 0.030 3.970 18 C -0.526 4.526 19 H 0.059 0.941 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.894 3.106 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.136 0.864 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.414 0.586 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.120 10.899 19.121 22.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.040 4.040 3 C -0.190 4.190 4 C -0.059 4.059 5 N -0.193 5.193 6 C -0.047 4.047 7 C -0.146 4.146 8 C 0.089 3.911 9 H 0.116 0.884 10 C -0.226 4.226 11 N -0.880 5.880 12 S 2.695 3.305 13 O -0.950 6.950 14 O -0.947 6.947 15 C -0.741 4.741 16 C -0.145 4.145 17 C -0.008 4.008 18 C -0.564 4.564 19 H 0.077 0.923 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.722 3.278 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.154 0.846 30 H 0.173 0.827 31 H 0.171 0.829 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.249 0.751 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.794 10.086 19.238 22.481 hybrid contribution -0.904 0.204 -1.081 1.424 sum 4.890 10.290 18.157 21.435 Atomic orbital electron populations 1.20982 0.89965 1.04120 1.03248 1.20148 0.96923 0.92171 0.94802 1.22038 0.95618 0.98589 1.02741 1.22781 0.91839 0.96298 0.94982 1.67717 1.41069 0.98391 1.12166 1.22502 0.90967 0.96285 0.94922 1.20844 0.95528 0.95103 1.03163 1.19543 0.91000 0.83158 0.97411 0.88425 1.22313 1.02038 1.03473 0.94734 1.55994 1.19175 1.42561 1.70254 1.05422 0.74584 0.73953 0.76585 1.93589 1.50480 1.64802 1.86172 1.93573 1.55177 1.77744 1.68234 1.30563 1.12026 1.12623 1.18925 1.21504 1.00010 0.95079 0.97888 1.19066 0.96472 0.95993 0.89273 1.21287 1.40006 0.94227 1.00888 0.92292 1.25020 0.95878 0.95421 0.98061 1.69967 1.46495 1.16029 1.20925 0.86500 0.78716 0.81931 0.80680 1.19576 1.20939 1.20929 0.89993 0.90528 0.90384 0.84582 0.82717 0.82928 0.91892 0.91377 0.89939 0.75059 0.85688 0.85205 0.91508 0.91498 0.96144 0.96122 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 9.04 36.01 0.33 -0.50 16 2 C -0.03 -0.27 5.92 -104.32 -0.62 -0.89 16 3 C -0.17 -1.34 9.82 -39.44 -0.39 -1.72 16 4 C 0.10 0.87 11.18 -17.55 -0.20 0.67 16 5 N -0.48 -5.34 10.36 -13.25 -0.14 -5.48 16 6 C 0.11 1.12 10.48 -17.54 -0.18 0.94 16 7 C -0.14 -1.34 5.10 -104.48 -0.53 -1.88 16 8 C 0.20 1.85 2.36 -69.09 -0.16 1.69 16 9 H 0.10 0.85 5.54 -51.92 -0.29 0.57 16 10 C -0.17 -1.45 9.46 37.16 0.35 -1.10 16 11 N -1.12 -11.64 5.19 -5.88 -0.03 -11.67 16 12 S 2.60 36.58 5.38 -107.50 -0.58 36.00 16 13 O -0.96 -16.46 18.08 -57.54 -1.04 -17.50 16 14 O -0.96 -15.67 17.11 -57.54 -0.98 -16.66 16 15 C -0.61 -9.14 5.96 37.16 0.22 -8.92 16 16 C -0.11 -2.10 5.16 -26.73 -0.14 -2.24 16 17 C 0.03 0.76 4.97 -27.89 -0.14 0.62 16 18 C -0.53 -14.71 9.11 -34.44 -0.31 -15.02 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 22 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H 0.08 0.42 7.87 -51.93 -0.41 0.01 16 27 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 28 H 0.08 0.52 6.27 -51.93 -0.33 0.19 16 29 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 30 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 31 H 0.15 1.29 5.95 -52.49 -0.31 0.98 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.47 7.24 -51.93 -0.38 0.10 16 34 H 0.08 0.83 7.42 -51.93 -0.39 0.45 16 35 H 0.41 3.58 6.48 -34.47 -0.22 3.36 16 36 H 0.12 1.63 7.44 -51.92 -0.39 1.24 16 37 H 0.13 1.79 8.14 -51.92 -0.42 1.37 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 357.62 15.07 5.39 5.39 Total: -1.00 -35.72 357.62 -9.59 -45.30 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -6.05 Total: 0.66 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: -1.87 Total: -26.80 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.57 Total: -42.83 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -2.02 Total: -34.16 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 36.58 SS G_CDS: -0.58 Total: 36.00 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.72 -9.59 -45.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611292265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.385 kcal (2) G-P(sol) polarization free energy of solvation -35.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds