Wall clock time and date at job start Fri Apr 10 2020 22:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38669 * 120.79114 * 2 1 4 4 C 1.38176 * 119.16451 * 180.02562 * 3 2 1 5 5 N 1.31882 * 120.76777 * 359.97399 * 4 3 2 6 6 C 1.31856 * 121.72242 * 359.77625 * 5 4 3 7 7 C 1.38231 * 120.76353 * 0.48985 * 6 5 4 8 8 C 1.50695 * 120.41769 * 179.77374 * 7 6 5 9 9 H 1.09008 * 109.47341 * 219.71928 * 8 7 6 10 10 C 1.52999 * 109.47163 * 99.72389 * 8 7 6 11 11 N 1.46497 * 109.47423 * 339.72018 * 8 7 6 12 12 S 1.65599 * 120.00110 * 214.99853 * 11 8 7 13 13 O 1.42105 * 104.27797 * 181.07392 * 12 11 8 14 14 O 1.42101 * 104.27901 * 308.93100 * 12 11 8 15 15 C 1.81397 * 104.44825 * 65.00280 * 12 11 8 16 16 C 1.53009 * 109.47235 * 179.97438 * 15 12 11 17 17 C 1.52995 * 109.46990 * 179.97438 * 16 15 12 18 18 C 1.50700 * 109.47073 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99821 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00285 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00002 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00089 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47293 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46799 * 120.00203 * 22 20 18 25 25 H 1.48493 * 109.47424 * 240.00186 * 22 20 18 26 26 H 1.09001 * 109.47200 * 269.98337 * 1 2 3 27 27 H 1.09003 * 109.47039 * 29.97870 * 1 2 3 28 28 H 1.09000 * 109.47248 * 149.97677 * 1 2 3 29 29 H 1.07998 * 120.41678 * 359.97438 * 3 2 1 30 30 H 1.08002 * 119.61819 * 179.97438 * 4 3 2 31 31 H 1.08000 * 119.62206 * 180.24475 * 6 5 4 32 32 H 1.08994 * 109.47130 * 299.99762 * 10 8 7 33 33 H 1.08998 * 109.47041 * 59.99885 * 10 8 7 34 34 H 1.09000 * 109.47228 * 179.97438 * 10 8 7 35 35 H 0.96999 * 119.99844 * 35.00578 * 11 8 7 36 36 H 1.09004 * 109.47032 * 299.99803 * 15 12 11 37 37 H 1.09000 * 109.47124 * 60.00075 * 15 12 11 38 38 H 1.08995 * 109.47216 * 300.00010 * 16 15 12 39 39 H 1.09000 * 109.46805 * 60.00123 * 16 15 12 40 40 H 1.08995 * 109.47375 * 300.00190 * 17 16 15 41 41 H 1.09000 * 109.47020 * 60.00531 * 17 16 15 42 42 H 0.96996 * 119.99810 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2403 0.0001 -0.0005 6 6 3.5983 -1.1516 0.0044 7 6 2.2166 -1.1909 -0.0005 8 6 1.4908 -2.5116 0.0001 9 1 0.6253 -2.4509 -0.6599 10 6 1.0266 -2.8379 1.4210 11 7 2.3927 -3.5646 -0.4730 12 16 1.7995 -4.8178 -1.3786 13 8 2.9331 -5.6378 -1.6273 14 8 0.6959 -5.3023 -0.6260 15 6 1.2296 -4.0369 -2.9135 16 6 0.6531 -5.1047 -3.8454 17 6 0.1718 -4.4460 -5.1397 18 6 -0.3954 -5.4978 -6.0579 19 1 -0.4115 -6.5325 -5.7489 20 6 -0.8949 -5.1390 -7.2919 21 7 -0.8758 -3.8789 -7.6680 22 14 -1.5973 -6.4428 -8.4303 23 1 -1.5024 -7.7732 -7.7774 24 1 -3.0211 -6.1336 -8.7181 25 1 -0.8276 -6.4581 -9.7001 26 1 -0.3634 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 1.6967 2.1377 -0.0004 30 1 4.1583 2.0754 -0.0010 31 1 4.1584 -2.0750 0.0082 32 1 1.8919 -2.8986 2.0809 33 1 0.3556 -2.0544 1.7729 34 1 0.5013 -3.7929 1.4213 35 1 3.3373 -3.5279 -0.2557 36 1 0.4590 -3.3013 -2.6825 37 1 2.0687 -3.5427 -3.4030 38 1 1.4238 -5.8400 -4.0763 39 1 -0.1860 -5.5993 -3.3561 40 1 -0.5991 -3.7110 -4.9085 41 1 1.0106 -3.9511 -5.6292 42 1 -1.2269 -3.6265 -8.5363 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611292265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:00 Heat of formation + Delta-G solvation = -81.953344 kcal Electronic energy + Delta-G solvation = -23792.047830 eV Core-core repulsion = 20283.526822 eV Total energy + Delta-G solvation = -3508.521008 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46906 -38.30153 -37.61341 -37.04848 -36.48087 -34.84068 -34.17440 -31.97439 -30.28211 -29.67782 -28.73879 -25.66493 -25.22900 -23.37722 -22.44390 -22.19527 -20.40291 -18.92574 -18.59083 -18.11537 -17.21521 -17.13758 -17.05883 -16.48153 -16.42251 -15.88629 -15.53301 -15.44123 -14.59928 -14.50629 -14.43332 -14.07181 -13.79648 -13.58386 -13.55676 -13.52336 -13.35682 -13.22507 -13.15324 -13.00241 -12.79972 -12.77473 -12.64096 -12.53252 -12.17895 -11.96073 -11.75748 -11.39907 -11.20965 -10.66314 -10.58420 -10.37586 -10.31329 -9.91659 -8.23227 -6.34095 -0.78714 0.13914 0.30505 1.39517 1.40515 1.53577 1.69253 2.39560 2.69811 2.82274 3.10577 3.18174 3.36132 3.66306 3.70092 3.82342 3.84230 3.91717 3.93389 4.11411 4.24584 4.36717 4.42304 4.56579 4.63471 4.67073 4.79238 4.82922 4.89447 4.92658 4.94545 5.05534 5.17399 5.23381 5.35006 5.42366 5.45169 5.61970 5.78677 5.78984 5.97252 6.19142 6.81771 7.03146 7.35469 8.88442 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.015559 B = 0.003352 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.191271 B = 8352.094806 C = 9224.989848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.038 4.038 3 C -0.169 4.169 4 C 0.086 3.914 5 N -0.514 5.514 6 C 0.093 3.907 7 C -0.149 4.149 8 C 0.192 3.808 9 H 0.106 0.894 10 C -0.166 4.166 11 N -1.108 6.108 12 S 2.631 3.369 13 O -0.990 6.990 14 O -0.977 6.977 15 C -0.613 4.613 16 C -0.106 4.106 17 C 0.031 3.969 18 C -0.551 4.551 19 H 0.060 0.940 20 C 0.003 3.997 21 N -0.930 5.930 22 Si 0.962 3.038 23 H -0.263 1.263 24 H -0.276 1.276 25 H -0.278 1.278 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.163 0.837 30 H 0.176 0.824 31 H 0.160 0.840 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.423 0.577 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.005 0.995 41 H 0.000 1.000 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.526 11.485 19.874 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.046 4.046 3 C -0.188 4.188 4 C -0.070 4.070 5 N -0.224 5.224 6 C -0.064 4.064 7 C -0.152 4.152 8 C 0.084 3.916 9 H 0.124 0.876 10 C -0.225 4.225 11 N -0.870 5.870 12 S 2.726 3.274 13 O -0.980 6.980 14 O -0.967 6.967 15 C -0.743 4.743 16 C -0.145 4.145 17 C -0.008 4.008 18 C -0.589 4.589 19 H 0.079 0.921 20 C -0.195 4.195 21 N -0.570 5.570 22 Si 0.787 3.213 23 H -0.187 1.187 24 H -0.201 1.201 25 H -0.204 1.204 26 H 0.116 0.884 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.181 0.819 30 H 0.193 0.807 31 H 0.177 0.823 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.261 0.739 36 H 0.164 0.836 37 H 0.159 0.841 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.024 0.976 41 H 0.018 0.982 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.205 10.666 19.992 23.250 hybrid contribution -0.703 0.132 -1.263 1.452 sum 4.502 10.798 18.729 22.083 Atomic orbital electron populations 1.21075 0.88553 1.04543 1.04394 1.20460 0.98045 0.92029 0.94100 1.22347 0.95327 0.99571 1.01566 1.23234 0.92768 0.96500 0.94538 1.67709 1.42079 0.99217 1.13360 1.22685 0.91556 0.96562 0.95568 1.20815 0.95283 0.95301 1.03813 1.19746 0.90969 0.82795 0.98082 0.87624 1.22307 1.02453 1.03385 0.94317 1.55621 1.20010 1.42177 1.69154 1.04282 0.73519 0.73752 0.75895 1.93546 1.51540 1.66365 1.86594 1.93548 1.56123 1.78545 1.68491 1.30538 1.13061 1.11849 1.18860 1.21311 1.00349 0.96166 0.96660 1.18964 0.95167 0.95297 0.91332 1.21768 1.40252 0.95012 1.01889 0.92128 1.25923 0.96191 0.97616 0.99769 1.70076 1.47362 1.17950 1.21586 0.85436 0.78104 0.79329 0.78440 1.18749 1.20145 1.20351 0.88404 0.89485 0.90633 0.81947 0.80660 0.82304 0.91526 0.89419 0.91360 0.73859 0.83607 0.84052 0.91684 0.91120 0.97648 0.98167 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 9.04 71.24 0.64 -0.71 16 2 C -0.04 -0.56 5.92 -19.67 -0.12 -0.68 16 3 C -0.17 -2.27 9.82 22.36 0.22 -2.05 16 4 C 0.09 1.39 11.18 84.67 0.95 2.34 16 5 N -0.51 -10.94 10.36 -195.84 -2.03 -12.97 16 6 C 0.09 1.81 10.48 84.69 0.89 2.70 16 7 C -0.15 -2.57 5.10 -19.78 -0.10 -2.67 16 8 C 0.19 3.30 2.36 44.24 0.10 3.41 16 9 H 0.11 1.65 5.54 -2.38 -0.01 1.64 16 10 C -0.17 -2.60 9.46 71.98 0.68 -1.92 16 11 N -1.11 -21.69 5.19 -172.53 -0.90 -22.58 16 12 S 2.63 71.82 5.38 -56.49 -0.30 71.52 16 13 O -0.99 -33.45 18.08 -127.65 -2.31 -35.76 16 14 O -0.98 -31.08 17.11 -127.65 -2.18 -33.27 16 15 C -0.61 -17.91 5.96 71.99 0.43 -17.48 16 16 C -0.11 -4.22 5.16 30.60 0.16 -4.06 16 17 C 0.03 1.57 4.97 29.85 0.15 1.71 16 18 C -0.55 -31.14 9.11 25.60 0.23 -30.90 16 19 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 20 C 0.00 0.18 5.46 84.65 0.46 0.64 16 21 N -0.93 -55.40 13.29 21.45 0.28 -55.11 16 22 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 23 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 26 H 0.10 0.72 7.87 -2.39 -0.02 0.70 16 27 H 0.09 0.74 8.10 -2.39 -0.02 0.72 16 28 H 0.07 0.84 6.27 -2.39 -0.01 0.82 16 29 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 30 H 0.18 1.89 8.06 -2.91 -0.02 1.86 16 31 H 0.16 2.61 5.95 -2.91 -0.02 2.59 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.01 7.24 -2.39 -0.02 1.00 16 34 H 0.07 1.29 7.42 -2.39 -0.02 1.27 16 35 H 0.42 6.90 6.48 -96.75 -0.63 6.27 16 36 H 0.15 3.60 7.44 -2.39 -0.02 3.59 16 37 H 0.14 3.80 8.14 -2.39 -0.02 3.78 16 38 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -76.44 357.62 -0.31 -76.75 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.40 Total: 15.13 kcal Atomic # 6 Polarization: -54.36 SS G_CDS: 4.70 Total: -49.67 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -2.64 Total: -90.66 kcal Atomic # 8 Polarization: -64.53 SS G_CDS: -4.49 Total: -69.03 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 71.82 SS G_CDS: -0.30 Total: 71.52 kcal Total: -76.44 -0.31 -76.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611292265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.205 kcal (2) G-P(sol) polarization free energy of solvation -76.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds