Wall clock time and date at job start Fri Apr 10 2020 22:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38673 * 120.41889 * 2 1 4 4 C 1.38626 * 118.42181 * 180.02562 * 3 2 1 5 5 C 1.38230 * 119.15896 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.61573 * 179.97438 * 5 4 3 7 7 N 1.46500 * 109.46949 * 95.00017 * 6 5 4 8 8 C 1.46495 * 119.99960 * 84.99526 * 7 6 5 9 9 S 1.65602 * 119.99912 * 265.00368 * 7 6 5 10 10 O 1.42104 * 104.27487 * 206.06754 * 9 7 6 11 11 O 1.42097 * 104.27690 * 333.92209 * 9 7 6 12 12 C 1.81393 * 104.45243 * 89.99913 * 9 7 6 13 13 C 1.53007 * 109.47168 * 179.97438 * 12 9 7 14 14 C 1.53003 * 109.47030 * 179.97438 * 13 12 9 15 15 C 1.50700 * 109.46957 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99830 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00149 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99962 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00135 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47004 * 90.00291 * 19 17 15 21 21 H 1.48505 * 109.47404 * 209.99775 * 19 17 15 22 22 H 1.48494 * 109.47307 * 330.00089 * 19 17 15 23 23 N 1.31854 * 120.76756 * 0.25243 * 5 4 3 24 24 C 1.31892 * 121.72001 * 359.47021 * 23 5 4 25 25 H 1.09004 * 109.47531 * 89.99854 * 1 2 3 26 26 H 1.09007 * 109.47201 * 209.99847 * 1 2 3 27 27 H 1.08996 * 109.47162 * 329.99598 * 1 2 3 28 28 H 1.07998 * 120.78825 * 0.02562 * 3 2 1 29 29 H 1.07996 * 120.41975 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47318 * 214.99404 * 6 5 4 31 31 H 1.09000 * 109.47161 * 335.00034 * 6 5 4 32 32 H 1.09003 * 109.46894 * 90.00359 * 8 7 6 33 33 H 1.08998 * 109.47684 * 209.99978 * 8 7 6 34 34 H 1.08998 * 109.47754 * 330.00129 * 8 7 6 35 35 H 1.09002 * 109.46905 * 299.99598 * 12 9 7 36 36 H 1.09005 * 109.47366 * 59.99756 * 12 9 7 37 37 H 1.09002 * 109.46939 * 299.99651 * 13 12 9 38 38 H 1.08995 * 109.46731 * 60.00068 * 13 12 9 39 39 H 1.09002 * 109.47011 * 299.99651 * 14 13 12 40 40 H 1.08996 * 109.46853 * 59.99793 * 14 13 12 41 41 H 0.96998 * 120.00211 * 180.02562 * 18 17 15 42 42 H 1.08002 * 119.61205 * 180.26679 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1475 -0.0005 5 6 4.2255 -0.0823 -0.0016 6 6 5.7312 -0.1468 -0.0028 7 7 6.2149 -0.2887 1.3727 8 6 6.2985 -1.6162 1.9866 9 16 6.6672 1.0517 2.2338 10 8 7.6057 0.5597 3.1806 11 8 7.0526 1.9923 1.2409 12 6 5.1473 1.5899 3.0648 13 6 5.4384 2.8363 3.9032 14 6 4.1563 3.2907 4.6036 15 6 4.4429 4.5187 5.4289 16 1 5.4398 4.9332 5.4518 17 6 3.4324 5.1129 6.1546 18 7 2.2181 4.6083 6.1263 19 14 3.7878 6.6345 7.1780 20 1 3.5704 7.8489 6.3514 21 1 2.8783 6.6654 8.3516 22 1 5.1970 6.5991 7.6447 23 7 3.5254 -1.1996 -0.0071 24 6 2.2066 -1.1916 -0.0014 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6889 2.1423 0.0004 29 1 4.1734 2.0592 -0.0001 30 1 6.0577 -1.0032 -0.5928 31 1 6.1338 0.7683 -0.4370 32 1 7.2807 -2.0461 1.7904 33 1 6.1485 -1.5291 3.0627 34 1 5.5284 -2.2613 1.5636 35 1 4.3880 1.8230 2.3182 36 1 4.7860 0.7922 3.7138 37 1 6.1975 2.6029 4.6497 38 1 5.7999 3.6342 3.2545 39 1 3.3975 3.5243 3.8568 40 1 3.7943 2.4929 5.2521 41 1 1.5071 5.0265 6.6365 42 1 1.6672 -2.1273 -0.0018 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616085275.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:02 Heat of formation + Delta-G solvation = -51.915474 kcal Electronic energy + Delta-G solvation = -24132.537827 eV Core-core repulsion = 20625.319359 eV Total energy + Delta-G solvation = -3507.218468 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47858 -37.00420 -36.57340 -35.74455 -34.69049 -33.64143 -32.29687 -32.09668 -29.14758 -27.82671 -26.54979 -24.58319 -23.82000 -23.45983 -21.61499 -20.54319 -18.82870 -17.60535 -16.94928 -16.75897 -16.32875 -16.26893 -15.66725 -15.27790 -14.98245 -14.51785 -14.40760 -14.06857 -13.98197 -13.39617 -13.05367 -12.85557 -12.79102 -12.64377 -12.58445 -12.33312 -12.26821 -11.95857 -11.83002 -11.73662 -11.55772 -11.48410 -11.23078 -10.93852 -10.86649 -10.44352 -9.99104 -9.86834 -9.78769 -9.48020 -9.24618 -9.00558 -8.91594 -8.42486 -6.07446 -4.10520 0.39182 0.88991 1.14626 2.71451 3.28929 3.35164 3.39437 3.62782 3.94940 4.09156 4.28856 4.40773 4.52503 4.64652 4.66249 4.80126 4.84698 5.10401 5.17256 5.18744 5.29022 5.32215 5.35397 5.40025 5.48795 5.58890 5.60496 5.75800 5.78887 5.86924 5.89818 6.02020 6.13148 6.23081 6.42271 6.43522 6.54860 6.85395 7.55145 7.64906 7.81738 7.90579 8.31044 8.95705 9.54294 11.03757 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.011558 B = 0.004415 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.038630 B = 6340.025545 C = 8181.083810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.134 4.134 3 C -0.070 4.070 4 C -0.162 4.162 5 C 0.093 3.907 6 C 0.167 3.833 7 N -0.999 5.999 8 C 0.095 3.905 9 S 2.594 3.406 10 O -0.956 6.956 11 O -0.959 6.959 12 C -0.610 4.610 13 C -0.104 4.104 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.058 3.942 18 N -0.896 5.896 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.272 1.272 23 N -0.467 5.467 24 C 0.097 3.903 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.261 0.739 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.630 -13.072 -14.996 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.137 4.137 3 C -0.095 4.095 4 C -0.183 4.183 5 C -0.046 4.046 6 C 0.041 3.959 7 N -0.834 5.834 8 C -0.051 4.051 9 S 2.691 3.309 10 O -0.947 6.947 11 O -0.949 6.949 12 C -0.742 4.742 13 C -0.144 4.144 14 C -0.006 4.006 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 N -0.176 5.176 24 C -0.061 4.061 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.574 -13.548 -14.930 20.169 hybrid contribution -1.321 1.511 0.785 2.155 sum -0.746 -12.037 -14.146 18.589 Atomic orbital electron populations 1.20746 0.90117 1.03545 1.02497 1.20988 0.97761 0.94270 1.00633 1.21581 0.93941 0.98602 0.95417 1.22180 0.95671 0.99320 1.01096 1.21740 0.97196 0.88751 0.96938 1.20204 0.86862 1.05469 0.83386 1.57561 1.81505 1.21478 1.22886 1.21479 1.02372 0.83411 0.97818 1.05615 0.77582 0.73207 0.74519 1.93571 1.58542 1.78894 1.63644 1.93541 1.81564 1.61872 1.57965 1.30646 1.20438 1.10213 1.12858 1.21502 1.03320 0.91809 0.97763 1.19042 0.90297 0.96234 0.95011 1.21253 0.95842 1.11406 1.27901 0.92358 1.25011 0.95045 0.97536 0.96723 1.69960 1.01001 1.40552 1.41949 0.86560 0.78329 0.83135 0.79827 1.20559 1.21168 1.19708 1.67460 1.08103 1.30808 1.11248 1.22647 0.89740 0.97468 0.96251 0.90921 0.91109 0.90927 0.84352 0.84138 0.88269 0.87073 0.92354 0.91255 0.90285 0.85730 0.85599 0.91586 0.91587 0.96223 0.96214 0.92922 0.82844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.04 36.00 0.36 -0.48 16 2 C -0.13 -1.35 5.90 -104.48 -0.62 -1.97 16 3 C -0.07 -0.76 9.86 -39.28 -0.39 -1.15 16 4 C -0.16 -1.89 8.20 -39.44 -0.32 -2.22 16 5 C 0.09 1.10 6.36 -82.58 -0.53 0.57 16 6 C 0.17 1.84 5.94 -5.19 -0.03 1.81 16 7 N -1.00 -12.44 3.10 -123.05 -0.38 -12.82 16 8 C 0.09 1.02 10.22 59.84 0.61 1.63 16 9 S 2.59 40.54 5.38 -107.50 -0.58 39.96 16 10 O -0.96 -17.47 17.09 -57.54 -0.98 -18.45 16 11 O -0.96 -16.58 16.53 -57.54 -0.95 -17.54 16 12 C -0.61 -9.99 6.18 37.16 0.23 -9.76 16 13 C -0.10 -2.15 5.16 -26.73 -0.14 -2.29 16 14 C 0.03 0.83 4.97 -27.88 -0.14 0.69 16 15 C -0.53 -14.78 9.11 -34.44 -0.31 -15.10 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 19 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 N -0.47 -5.50 10.27 -9.47 -0.10 -5.60 16 24 C 0.10 1.00 10.86 -17.55 -0.19 0.81 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.46 8.09 -51.92 -0.42 0.04 16 27 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 29 H 0.14 1.53 8.03 -52.49 -0.42 1.11 16 30 H 0.10 0.92 8.11 -51.93 -0.42 0.50 16 31 H 0.11 1.18 6.72 -51.93 -0.35 0.83 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.74 7.79 -51.93 -0.40 0.34 16 34 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 35 H 0.12 1.90 6.51 -51.92 -0.34 1.56 16 36 H 0.13 1.92 8.14 -51.92 -0.42 1.50 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 365.34 15.07 5.51 5.51 Total: -1.00 -34.56 365.34 -9.87 -44.43 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.54 Total: -0.34 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: -1.56 Total: -25.90 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.26 Total: -44.15 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -1.93 Total: -35.99 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 40.54 SS G_CDS: -0.58 Total: 39.96 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.56 -9.87 -44.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616085275.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.487 kcal (2) G-P(sol) polarization free energy of solvation -34.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds