Wall clock time and date at job start Fri Apr 10 2020 22:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38673 * 120.41889 * 2 1 4 4 C 1.38626 * 118.42181 * 180.02562 * 3 2 1 5 5 C 1.38230 * 119.15896 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.61573 * 179.97438 * 5 4 3 7 7 N 1.46500 * 109.46949 * 95.00017 * 6 5 4 8 8 C 1.46495 * 119.99960 * 84.99526 * 7 6 5 9 9 S 1.65602 * 119.99912 * 265.00368 * 7 6 5 10 10 O 1.42104 * 104.27487 * 206.06754 * 9 7 6 11 11 O 1.42097 * 104.27690 * 333.92209 * 9 7 6 12 12 C 1.81393 * 104.45243 * 89.99913 * 9 7 6 13 13 C 1.53007 * 109.47168 * 179.97438 * 12 9 7 14 14 C 1.53003 * 109.47030 * 179.97438 * 13 12 9 15 15 C 1.50700 * 109.46957 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99830 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00149 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99962 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00135 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47004 * 90.00291 * 19 17 15 21 21 H 1.48505 * 109.47404 * 209.99775 * 19 17 15 22 22 H 1.48494 * 109.47307 * 330.00089 * 19 17 15 23 23 N 1.31854 * 120.76756 * 0.25243 * 5 4 3 24 24 C 1.31892 * 121.72001 * 359.47021 * 23 5 4 25 25 H 1.09004 * 109.47531 * 89.99854 * 1 2 3 26 26 H 1.09007 * 109.47201 * 209.99847 * 1 2 3 27 27 H 1.08996 * 109.47162 * 329.99598 * 1 2 3 28 28 H 1.07998 * 120.78825 * 0.02562 * 3 2 1 29 29 H 1.07996 * 120.41975 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47318 * 214.99404 * 6 5 4 31 31 H 1.09000 * 109.47161 * 335.00034 * 6 5 4 32 32 H 1.09003 * 109.46894 * 90.00359 * 8 7 6 33 33 H 1.08998 * 109.47684 * 209.99978 * 8 7 6 34 34 H 1.08998 * 109.47754 * 330.00129 * 8 7 6 35 35 H 1.09002 * 109.46905 * 299.99598 * 12 9 7 36 36 H 1.09005 * 109.47366 * 59.99756 * 12 9 7 37 37 H 1.09002 * 109.46939 * 299.99651 * 13 12 9 38 38 H 1.08995 * 109.46731 * 60.00068 * 13 12 9 39 39 H 1.09002 * 109.47011 * 299.99651 * 14 13 12 40 40 H 1.08996 * 109.46853 * 59.99793 * 14 13 12 41 41 H 0.96998 * 120.00211 * 180.02562 * 18 17 15 42 42 H 1.08002 * 119.61205 * 180.26679 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1475 -0.0005 5 6 4.2255 -0.0823 -0.0016 6 6 5.7312 -0.1468 -0.0028 7 7 6.2149 -0.2887 1.3727 8 6 6.2985 -1.6162 1.9866 9 16 6.6672 1.0517 2.2338 10 8 7.6057 0.5597 3.1806 11 8 7.0526 1.9923 1.2409 12 6 5.1473 1.5899 3.0648 13 6 5.4384 2.8363 3.9032 14 6 4.1563 3.2907 4.6036 15 6 4.4429 4.5187 5.4289 16 1 5.4398 4.9332 5.4518 17 6 3.4324 5.1129 6.1546 18 7 2.2181 4.6083 6.1263 19 14 3.7878 6.6345 7.1780 20 1 3.5704 7.8489 6.3514 21 1 2.8783 6.6654 8.3516 22 1 5.1970 6.5991 7.6447 23 7 3.5254 -1.1996 -0.0071 24 6 2.2066 -1.1916 -0.0014 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6889 2.1423 0.0004 29 1 4.1734 2.0592 -0.0001 30 1 6.0577 -1.0032 -0.5928 31 1 6.1338 0.7683 -0.4370 32 1 7.2807 -2.0461 1.7904 33 1 6.1485 -1.5291 3.0627 34 1 5.5284 -2.2613 1.5636 35 1 4.3880 1.8230 2.3182 36 1 4.7860 0.7922 3.7138 37 1 6.1975 2.6029 4.6497 38 1 5.7999 3.6342 3.2545 39 1 3.3975 3.5243 3.8568 40 1 3.7943 2.4929 5.2521 41 1 1.5071 5.0265 6.6365 42 1 1.6672 -2.1273 -0.0018 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616085275.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:02 Heat of formation + Delta-G solvation = -74.701535 kcal Electronic energy + Delta-G solvation = -24133.525904 eV Core-core repulsion = 20625.319359 eV Total energy + Delta-G solvation = -3508.206546 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.29650 -38.33889 -37.54562 -37.07391 -36.51353 -34.43522 -34.20469 -33.01972 -29.94946 -29.69391 -27.36893 -25.82437 -25.23275 -24.45857 -22.54442 -22.23204 -20.03040 -18.81071 -18.58184 -17.83215 -17.53502 -17.39192 -16.92061 -16.50374 -16.26959 -16.01321 -15.66456 -14.97513 -14.91696 -14.53436 -14.26085 -14.10307 -13.93958 -13.73697 -13.57009 -13.49589 -13.43951 -13.29726 -13.24387 -13.03747 -12.78135 -12.67600 -12.61315 -12.51545 -12.48496 -12.17846 -11.80598 -11.41799 -11.16586 -10.72899 -10.59187 -10.57867 -10.03726 -9.77243 -8.24055 -6.35403 -0.86854 0.04920 0.30449 1.39560 1.40252 1.51729 1.59217 2.38701 2.68014 2.78457 3.05072 3.09595 3.27928 3.58722 3.72060 3.80543 3.87650 3.92990 4.02845 4.07744 4.32305 4.36047 4.48206 4.57985 4.61245 4.70463 4.78296 4.81684 4.84455 4.88323 4.94385 5.00050 5.04967 5.17596 5.19510 5.36353 5.42317 5.46088 5.58616 5.75913 5.76753 6.17208 6.79716 6.98239 7.34172 8.87516 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.011558 B = 0.004415 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.038630 B = 6340.025545 C = 8181.083810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.136 4.136 3 C -0.086 4.086 4 C -0.177 4.177 5 C 0.083 3.917 6 C 0.164 3.836 7 N -0.991 5.991 8 C 0.087 3.913 9 S 2.619 3.381 10 O -0.981 6.981 11 O -0.975 6.975 12 C -0.611 4.611 13 C -0.103 4.103 14 C 0.035 3.965 15 C -0.552 4.552 16 H 0.061 0.939 17 C 0.005 3.995 18 N -0.930 5.930 19 Si 0.963 3.037 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.265 1.265 23 N -0.478 5.478 24 C 0.089 3.911 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.002 0.998 40 H -0.002 1.002 41 H 0.265 0.735 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.668 -13.670 -15.517 20.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.138 4.138 3 C -0.112 4.112 4 C -0.198 4.198 5 C -0.057 4.057 6 C 0.039 3.961 7 N -0.828 5.828 8 C -0.057 4.057 9 S 2.715 3.285 10 O -0.971 6.971 11 O -0.966 6.966 12 C -0.742 4.742 13 C -0.142 4.142 14 C -0.003 4.003 15 C -0.590 4.590 16 H 0.079 0.921 17 C -0.194 4.194 18 N -0.570 5.570 19 Si 0.787 3.213 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.189 1.189 23 N -0.187 5.187 24 C -0.068 4.068 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.164 0.836 29 H 0.158 0.842 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.020 0.980 40 H 0.017 0.983 41 H 0.074 0.926 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.537 -14.138 -15.449 20.948 hybrid contribution -1.383 1.618 0.883 2.305 sum -0.846 -12.520 -14.566 19.226 Atomic orbital electron populations 1.20798 0.88319 1.03969 1.03630 1.21298 0.99134 0.93853 0.99485 1.21831 0.94018 0.99572 0.95766 1.22311 0.96196 0.99541 1.01743 1.21791 0.97468 0.88826 0.97565 1.20390 0.86662 1.06593 0.82488 1.57305 1.81336 1.21029 1.23143 1.21694 1.03689 0.82504 0.97853 1.04691 0.76639 0.73322 0.73873 1.93535 1.59353 1.79471 1.64774 1.93514 1.81718 1.63111 1.58221 1.30622 1.21981 1.08644 1.12912 1.21314 1.00820 0.93918 0.98189 1.18918 0.92123 0.94985 0.94309 1.21717 0.96169 1.12532 1.28584 0.92079 1.25920 0.94783 1.00774 0.97889 1.70075 1.01945 1.42113 1.42825 0.85482 0.78479 0.79169 0.78178 1.19585 1.20557 1.18895 1.67478 1.08844 1.30740 1.11595 1.23128 0.89516 0.98646 0.95546 0.89337 0.89793 0.91386 0.83650 0.84154 0.86104 0.86901 0.91026 0.91334 0.88954 0.84794 0.84644 0.91538 0.91185 0.97951 0.98325 0.92626 0.80296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.04 71.23 0.71 -0.75 16 2 C -0.14 -2.55 5.90 -19.78 -0.12 -2.67 16 3 C -0.09 -1.85 9.86 22.47 0.22 -1.63 16 4 C -0.18 -4.08 8.20 22.36 0.18 -3.90 16 5 C 0.08 1.85 6.36 42.56 0.27 2.12 16 6 C 0.16 3.38 5.94 85.63 0.51 3.89 16 7 N -0.99 -23.26 3.10 -543.23 -1.68 -24.95 16 8 C 0.09 1.72 10.22 127.77 1.31 3.02 16 9 S 2.62 80.01 5.38 -56.49 -0.30 79.71 16 10 O -0.98 -35.14 17.09 -127.65 -2.18 -37.32 16 11 O -0.98 -33.10 16.53 -127.65 -2.11 -35.21 16 12 C -0.61 -19.99 6.18 71.98 0.44 -19.55 16 13 C -0.10 -4.30 5.16 30.60 0.16 -4.14 16 14 C 0.03 1.82 4.97 29.85 0.15 1.97 16 15 C -0.55 -31.45 9.11 25.60 0.23 -31.21 16 16 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 17 C 0.00 0.26 5.46 84.65 0.46 0.73 16 18 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 19 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 22 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 23 N -0.48 -10.46 10.27 -183.87 -1.89 -12.35 16 24 C 0.09 1.68 10.86 84.67 0.92 2.60 16 25 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 0.90 8.09 -2.38 -0.02 0.88 16 27 H 0.07 0.98 8.10 -2.39 -0.02 0.96 16 28 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 29 H 0.14 3.10 8.03 -2.91 -0.02 3.07 16 30 H 0.12 1.97 8.11 -2.39 -0.02 1.95 16 31 H 0.11 2.28 6.72 -2.39 -0.02 2.26 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.37 7.79 -2.39 -0.02 1.35 16 34 H 0.09 1.59 8.07 -2.39 -0.02 1.57 16 35 H 0.13 4.10 6.51 -2.39 -0.02 4.08 16 36 H 0.14 4.12 8.14 -2.39 -0.02 4.10 16 37 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 42 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -73.23 365.34 0.59 -72.64 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.99 Total: 16.30 kcal Atomic # 6 Polarization: -54.98 SS G_CDS: 5.45 Total: -49.52 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -3.29 Total: -92.62 kcal Atomic # 8 Polarization: -68.23 SS G_CDS: -4.29 Total: -72.52 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 80.01 SS G_CDS: -0.30 Total: 79.71 kcal Total: -73.23 0.59 -72.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616085275.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.064 kcal (2) G-P(sol) polarization free energy of solvation -73.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds