Wall clock time and date at job start Fri Apr 10 2020 22:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39046 * 121.01800 * 2 1 4 4 C 1.47763 * 120.26937 * 359.97333 * 3 2 1 5 5 O 1.21568 * 119.99661 * 34.31290 * 4 3 2 6 6 N 1.34771 * 120.00363 * 214.31603 * 4 3 2 7 7 C 1.47066 * 136.05317 * 5.04931 * 6 4 3 8 8 C 1.53754 * 87.88808 * 152.96999 * 7 6 4 9 9 O 1.42908 * 114.39081 * 272.67374 * 8 7 6 10 10 C 1.50693 * 114.26873 * 139.79287 * 8 7 6 11 11 H 1.08003 * 120.00267 * 266.46905 * 10 8 7 12 12 C 1.37878 * 120.00134 * 86.47633 * 10 8 7 13 13 N 1.31514 * 120.00091 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00158 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47147 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47315 * 119.99677 * 14 12 10 17 17 H 1.48502 * 109.47147 * 239.99976 * 14 12 10 18 18 C 1.47059 * 136.06305 * 185.42869 * 6 4 3 19 19 C 1.40559 * 119.46315 * 179.97438 * 3 2 1 20 20 N 1.30820 * 121.53875 * 359.97438 * 19 3 2 21 21 C 1.33787 * 121.72350 * 359.97438 * 20 19 3 22 22 C 1.40531 * 120.83021 * 180.02562 * 21 20 19 23 23 C 1.36132 * 119.81726 * 179.97438 * 22 21 20 24 24 C 1.39352 * 121.09266 * 0.02939 * 23 22 21 25 25 C 1.36139 * 120.83412 * 359.97438 * 24 23 22 26 26 C 1.40492 * 121.01973 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46978 * 265.74043 * 1 2 3 28 28 H 1.08999 * 109.47101 * 25.74075 * 1 2 3 29 29 H 1.08997 * 109.46704 * 145.73758 * 1 2 3 30 30 H 1.09011 * 113.46882 * 267.69651 * 7 6 4 31 31 H 1.09006 * 113.47290 * 38.13644 * 7 6 4 32 32 H 0.96690 * 114.00124 * 273.58859 * 9 8 7 33 33 H 0.97001 * 119.99917 * 180.02562 * 13 12 10 34 34 H 1.09007 * 113.46459 * 321.85654 * 18 6 4 35 35 H 1.09000 * 113.47112 * 92.23454 * 18 6 4 36 36 H 1.08000 * 119.22703 * 180.26305 * 19 3 2 37 37 H 1.08001 * 120.09120 * 0.02562 * 22 21 20 38 38 H 1.08001 * 119.45287 * 180.02562 * 23 22 21 39 39 H 1.07997 * 119.57849 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.18470 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2236 1.1916 0.0000 4 6 1.5137 2.4876 -0.0006 5 8 0.4588 2.6030 0.5925 6 7 2.0356 3.5416 -0.6586 7 6 3.1927 3.7748 -1.5359 8 6 2.4032 4.9290 -2.1753 9 8 1.5568 4.5366 -3.2577 10 6 3.2302 6.1516 -2.4788 11 1 3.2893 6.9557 -1.7602 12 6 3.9114 6.2438 -3.6741 13 7 3.8398 5.2646 -4.5490 14 14 4.9371 7.7591 -4.0501 15 1 4.8536 8.7085 -2.9112 16 1 6.3519 7.3597 -4.2594 17 1 4.4206 8.4140 -5.2787 18 6 1.7028 4.9660 -0.8100 19 6 3.6287 1.1535 0.0005 20 7 4.2824 0.0204 0.0016 21 6 3.6483 -1.1577 0.0026 22 6 4.3695 -2.3638 0.0042 23 6 3.7032 -3.5509 0.0058 24 6 2.3104 -3.5944 0.0053 25 6 1.5765 -2.4477 0.0037 26 6 2.2311 -1.2040 0.0005 27 1 -0.3633 -0.0763 1.0249 28 1 -0.3633 0.9257 -0.4463 29 1 -0.3632 -0.8493 -0.5786 30 1 4.0841 4.1028 -1.0009 31 1 3.3911 2.9506 -2.2212 32 1 2.0010 4.5142 -4.1162 33 1 4.3193 5.3293 -5.3897 34 1 0.6316 5.1567 -0.8767 35 1 2.2004 5.6078 -0.0830 36 1 4.1814 2.0813 0.0049 37 1 5.4494 -2.3490 0.0051 38 1 4.2634 -4.4743 0.0075 39 1 1.8068 -4.5498 0.0062 40 1 0.4975 -2.4936 0.0037 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619444087.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:05 Heat of formation + Delta-G solvation = 10.744766 kcal Electronic energy + Delta-G solvation = -25344.019615 eV Core-core repulsion = 21704.074347 eV Total energy + Delta-G solvation = -3639.945267 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.05538 -39.57357 -37.72744 -36.77986 -34.51567 -34.04143 -32.22609 -31.05164 -30.41767 -28.88751 -27.65225 -25.54215 -25.23260 -23.95023 -23.74387 -21.06559 -20.63444 -18.96149 -17.95555 -17.79946 -17.24008 -16.41605 -15.88410 -15.44598 -15.05971 -14.88347 -14.54455 -14.38350 -14.17600 -13.98793 -13.89844 -13.29248 -12.98455 -12.89197 -12.64162 -12.46691 -12.10159 -11.96788 -11.82983 -11.70649 -11.60022 -11.51274 -11.11061 -11.03161 -10.50366 -10.30812 -10.17117 -9.95797 -9.49072 -9.16847 -8.84733 -8.81095 -8.46689 -8.28680 -7.90669 -6.43605 -4.54294 0.23618 0.63296 1.83475 2.64169 3.12134 3.21563 3.24658 3.33050 3.44562 4.06576 4.15610 4.23266 4.43685 4.62060 4.67881 4.71812 4.80666 4.93970 5.00168 5.12208 5.36168 5.39179 5.51236 5.61908 5.65994 5.79551 5.86149 5.92138 5.95450 6.07744 6.15229 6.23767 6.33732 6.37659 6.43791 6.44482 6.57150 6.63501 6.72795 7.05388 7.59706 7.76044 7.87343 8.35787 8.49859 8.61509 9.17492 9.44854 10.63174 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.020047 B = 0.003594 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.373595 B = 7788.045893 C = 8554.286825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.034 3.966 3 C -0.179 4.179 4 C 0.583 3.417 5 O -0.552 6.552 6 N -0.627 5.627 7 C 0.066 3.934 8 C 0.242 3.758 9 O -0.571 6.571 10 C -0.534 4.534 11 H 0.074 0.926 12 C 0.072 3.928 13 N -0.897 5.897 14 Si 0.909 3.091 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.108 3.892 19 C 0.173 3.827 20 N -0.483 5.483 21 C 0.141 3.859 22 C -0.097 4.097 23 C -0.098 4.098 24 C -0.126 4.126 25 C -0.086 4.086 26 C -0.112 4.112 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.394 0.606 33 H 0.274 0.726 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.165 0.835 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.329 -14.155 6.690 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.025 3.975 3 C -0.185 4.185 4 C 0.372 3.628 5 O -0.433 6.433 6 N -0.359 5.359 7 C -0.057 4.057 8 C 0.200 3.800 9 O -0.384 6.384 10 C -0.572 4.572 11 H 0.092 0.908 12 C -0.130 4.130 13 N -0.537 5.537 14 Si 0.736 3.264 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.014 4.014 19 C 0.000 4.000 20 N -0.191 5.191 21 C 0.020 3.980 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.144 4.144 25 C -0.105 4.105 26 C -0.114 4.114 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.251 0.749 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.182 0.818 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.413 -14.465 7.378 16.243 hybrid contribution 0.338 0.707 -0.718 1.063 sum -0.075 -13.758 6.661 15.285 Atomic orbital electron populations 1.20996 0.89047 1.04199 1.03478 1.20568 0.97063 0.90538 0.89344 1.20878 0.95321 0.94294 1.07967 1.17369 0.84563 0.82399 0.78445 1.90715 1.22604 1.84156 1.45779 1.49644 1.30113 1.09280 1.46848 1.24408 0.89822 1.00658 0.90821 1.19558 0.86369 0.90259 0.83796 1.86043 1.40870 1.90721 1.20750 1.21457 1.28627 1.03599 1.03539 0.90768 1.25087 0.95678 0.96735 0.95533 1.69270 1.43263 1.31936 1.09274 0.86254 0.79510 0.82026 0.78600 1.19370 1.20618 1.20622 1.23377 1.01310 0.79042 0.97625 1.23173 0.90248 0.96598 0.89992 1.67982 1.39435 0.97426 1.14299 1.19018 0.89608 0.92704 0.96702 1.20815 1.00464 0.90105 1.00188 1.20932 0.94500 0.97905 0.98405 1.20893 0.94109 0.98417 1.00996 1.21069 1.00209 0.91029 0.98150 1.18689 0.94038 0.93956 1.04709 0.89526 0.89079 0.91209 0.89726 0.91561 0.74909 0.91566 0.91302 0.89339 0.81825 0.84614 0.85317 0.85500 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 8.50 36.01 0.31 -1.38 16 2 C 0.03 0.53 5.98 -103.47 -0.62 -0.08 16 3 C -0.18 -3.20 5.76 -104.83 -0.60 -3.81 16 4 C 0.58 11.82 7.25 -12.37 -0.09 11.73 16 5 O -0.55 -12.13 15.38 5.31 0.08 -12.05 16 6 N -0.63 -12.95 3.63 -186.23 -0.68 -13.63 16 7 C 0.07 1.37 5.94 -8.39 -0.05 1.33 16 8 C 0.24 5.66 1.58 -91.13 -0.14 5.52 16 9 O -0.57 -14.56 13.55 -35.23 -0.48 -15.04 16 10 C -0.53 -13.00 8.70 -34.44 -0.30 -13.30 16 11 H 0.07 1.75 7.81 -52.48 -0.41 1.34 16 12 C 0.07 1.76 5.39 -17.82 -0.10 1.67 16 13 N -0.90 -22.43 11.01 55.43 0.61 -21.82 16 14 Si 0.91 19.07 29.54 -169.99 -5.02 14.05 16 15 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 16 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 18 C 0.11 2.28 8.02 -8.53 -0.07 2.21 16 19 C 0.17 2.93 10.10 -17.11 -0.17 2.75 16 20 N -0.48 -8.05 10.30 -10.68 -0.11 -8.16 16 21 C 0.14 2.13 6.61 -84.79 -0.56 1.57 16 22 C -0.10 -1.17 9.97 -39.48 -0.39 -1.56 16 23 C -0.10 -0.93 9.94 -39.92 -0.40 -1.32 16 24 C -0.13 -1.17 9.96 -39.92 -0.40 -1.57 16 25 C -0.09 -0.96 9.31 -39.47 -0.37 -1.32 16 26 C -0.11 -1.62 5.74 -106.82 -0.61 -2.23 16 27 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.09 1.51 6.12 -51.93 -0.32 1.19 16 29 H 0.07 0.76 6.75 -51.93 -0.35 0.41 16 30 H 0.08 1.63 7.95 -51.92 -0.41 1.22 16 31 H 0.07 1.44 8.12 -51.93 -0.42 1.01 16 32 H 0.39 10.21 6.32 45.56 0.29 10.49 16 33 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 34 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 36 H 0.16 2.61 6.56 -52.49 -0.34 2.27 16 37 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.13 1.17 6.54 -52.49 -0.34 0.83 16 LS Contribution 336.54 15.07 5.07 5.07 Total: -1.00 -28.76 336.54 -9.07 -37.83 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -3.98 Total: 13.54 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -4.57 Total: 0.21 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.18 Total: -43.61 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.40 Total: -27.09 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.76 -9.07 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619444087.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.570 kcal (2) G-P(sol) polarization free energy of solvation -28.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds