Wall clock time and date at job start Fri Apr 10 2020 22:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39046 * 121.01800 * 2 1 4 4 C 1.47763 * 120.26937 * 359.97333 * 3 2 1 5 5 O 1.21568 * 119.99661 * 34.31290 * 4 3 2 6 6 N 1.34771 * 120.00363 * 214.31603 * 4 3 2 7 7 C 1.47066 * 136.05317 * 5.04931 * 6 4 3 8 8 C 1.53754 * 87.88808 * 152.96999 * 7 6 4 9 9 O 1.42908 * 114.39081 * 272.67374 * 8 7 6 10 10 C 1.50693 * 114.26873 * 139.79287 * 8 7 6 11 11 H 1.08003 * 120.00267 * 266.46905 * 10 8 7 12 12 C 1.37878 * 120.00134 * 86.47633 * 10 8 7 13 13 N 1.31514 * 120.00091 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00158 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47147 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47315 * 119.99677 * 14 12 10 17 17 H 1.48502 * 109.47147 * 239.99976 * 14 12 10 18 18 C 1.47059 * 136.06305 * 185.42869 * 6 4 3 19 19 C 1.40559 * 119.46315 * 179.97438 * 3 2 1 20 20 N 1.30820 * 121.53875 * 359.97438 * 19 3 2 21 21 C 1.33787 * 121.72350 * 359.97438 * 20 19 3 22 22 C 1.40531 * 120.83021 * 180.02562 * 21 20 19 23 23 C 1.36132 * 119.81726 * 179.97438 * 22 21 20 24 24 C 1.39352 * 121.09266 * 0.02939 * 23 22 21 25 25 C 1.36139 * 120.83412 * 359.97438 * 24 23 22 26 26 C 1.40492 * 121.01973 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46978 * 265.74043 * 1 2 3 28 28 H 1.08999 * 109.47101 * 25.74075 * 1 2 3 29 29 H 1.08997 * 109.46704 * 145.73758 * 1 2 3 30 30 H 1.09011 * 113.46882 * 267.69651 * 7 6 4 31 31 H 1.09006 * 113.47290 * 38.13644 * 7 6 4 32 32 H 0.96690 * 114.00124 * 273.58859 * 9 8 7 33 33 H 0.97001 * 119.99917 * 180.02562 * 13 12 10 34 34 H 1.09007 * 113.46459 * 321.85654 * 18 6 4 35 35 H 1.09000 * 113.47112 * 92.23454 * 18 6 4 36 36 H 1.08000 * 119.22703 * 180.26305 * 19 3 2 37 37 H 1.08001 * 120.09120 * 0.02562 * 22 21 20 38 38 H 1.08001 * 119.45287 * 180.02562 * 23 22 21 39 39 H 1.07997 * 119.57849 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.18470 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2236 1.1916 0.0000 4 6 1.5137 2.4876 -0.0006 5 8 0.4588 2.6030 0.5925 6 7 2.0356 3.5416 -0.6586 7 6 3.1927 3.7748 -1.5359 8 6 2.4032 4.9290 -2.1753 9 8 1.5568 4.5366 -3.2577 10 6 3.2302 6.1516 -2.4788 11 1 3.2893 6.9557 -1.7602 12 6 3.9114 6.2438 -3.6741 13 7 3.8398 5.2646 -4.5490 14 14 4.9371 7.7591 -4.0501 15 1 4.8536 8.7085 -2.9112 16 1 6.3519 7.3597 -4.2594 17 1 4.4206 8.4140 -5.2787 18 6 1.7028 4.9660 -0.8100 19 6 3.6287 1.1535 0.0005 20 7 4.2824 0.0204 0.0016 21 6 3.6483 -1.1577 0.0026 22 6 4.3695 -2.3638 0.0042 23 6 3.7032 -3.5509 0.0058 24 6 2.3104 -3.5944 0.0053 25 6 1.5765 -2.4477 0.0037 26 6 2.2311 -1.2040 0.0005 27 1 -0.3633 -0.0763 1.0249 28 1 -0.3633 0.9257 -0.4463 29 1 -0.3632 -0.8493 -0.5786 30 1 4.0841 4.1028 -1.0009 31 1 3.3911 2.9506 -2.2212 32 1 2.0010 4.5142 -4.1162 33 1 4.3193 5.3293 -5.3897 34 1 0.6316 5.1567 -0.8767 35 1 2.2004 5.6078 -0.0830 36 1 4.1814 2.0813 0.0049 37 1 5.4494 -2.3490 0.0051 38 1 4.2634 -4.4743 0.0075 39 1 1.8068 -4.5498 0.0062 40 1 0.4975 -2.4936 0.0037 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619444087.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:04 Heat of formation + Delta-G solvation = -8.108591 kcal Electronic energy + Delta-G solvation = -25344.837158 eV Core-core repulsion = 21704.074347 eV Total energy + Delta-G solvation = -3640.762810 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.22490 -41.12534 -39.27500 -37.89322 -36.00668 -35.55011 -34.13739 -32.26392 -31.35018 -30.37099 -28.93660 -27.24112 -26.91992 -25.11114 -24.81840 -22.23484 -22.09594 -20.48923 -19.54937 -18.96105 -18.72925 -17.75712 -17.39638 -17.01361 -16.46289 -16.33275 -16.00060 -15.61695 -15.45542 -15.11630 -14.98173 -14.93541 -14.47601 -14.17071 -13.99113 -13.79070 -13.78526 -13.42345 -13.09197 -12.84093 -12.79657 -12.76453 -12.71689 -12.43497 -12.23384 -12.16620 -11.49364 -11.24629 -11.11603 -10.71446 -10.53302 -10.27239 -9.91148 -9.62830 -9.24948 -8.28484 -6.45775 -0.82471 -0.44770 0.80924 1.45991 1.46553 1.50911 1.61349 1.81087 2.08197 2.40426 2.93299 2.99561 3.10508 3.34424 3.41991 3.53403 3.68292 3.79860 3.85686 4.08892 4.17909 4.25483 4.36179 4.39372 4.43983 4.53431 4.59212 4.61338 4.71253 4.81081 4.87204 4.92148 4.99825 5.01955 5.11257 5.20919 5.36772 5.40728 5.45957 5.72190 5.84466 5.88884 6.61122 6.69087 6.75102 7.00645 7.28439 7.45933 8.78064 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.020047 B = 0.003594 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.373595 B = 7788.045893 C = 8554.286825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.034 3.966 3 C -0.212 4.212 4 C 0.583 3.417 5 O -0.576 6.576 6 N -0.630 5.630 7 C 0.084 3.916 8 C 0.220 3.780 9 O -0.586 6.586 10 C -0.549 4.549 11 H 0.079 0.921 12 C 0.031 3.969 13 N -0.919 5.919 14 Si 0.972 3.028 15 H -0.264 1.264 16 H -0.278 1.278 17 H -0.283 1.283 18 C 0.111 3.889 19 C 0.161 3.839 20 N -0.499 5.499 21 C 0.116 3.884 22 C -0.119 4.119 23 C -0.076 4.076 24 C -0.111 4.111 25 C -0.094 4.094 26 C -0.127 4.127 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.389 0.611 33 H 0.276 0.724 34 H 0.058 0.942 35 H 0.111 0.889 36 H 0.162 0.838 37 H 0.144 0.856 38 H 0.169 0.831 39 H 0.170 0.830 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.076 -16.913 7.213 18.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.025 3.975 3 C -0.217 4.217 4 C 0.374 3.626 5 O -0.458 6.458 6 N -0.362 5.362 7 C -0.039 4.039 8 C 0.179 3.821 9 O -0.399 6.399 10 C -0.587 4.587 11 H 0.097 0.903 12 C -0.169 4.169 13 N -0.560 5.560 14 Si 0.797 3.203 15 H -0.188 1.188 16 H -0.204 1.204 17 H -0.208 1.208 18 C -0.011 4.011 19 C -0.012 4.012 20 N -0.207 5.207 21 C -0.005 4.005 22 C -0.138 4.138 23 C -0.095 4.095 24 C -0.129 4.129 25 C -0.112 4.112 26 C -0.129 4.129 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.071 0.929 32 H 0.245 0.755 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.129 0.871 36 H 0.179 0.821 37 H 0.162 0.838 38 H 0.187 0.813 39 H 0.187 0.813 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.008 -17.232 7.916 18.963 hybrid contribution 0.180 1.310 -0.868 1.581 sum 0.171 -15.922 7.049 17.413 Atomic orbital electron populations 1.20996 0.87893 1.03943 1.04373 1.20896 0.97996 0.90603 0.88015 1.20719 0.95745 0.93625 1.11633 1.17775 0.84227 0.82986 0.77614 1.90678 1.23697 1.84647 1.46788 1.49638 1.30038 1.09317 1.47182 1.24168 0.90146 0.99100 0.90513 1.19859 0.87156 0.91138 0.83958 1.86027 1.41801 1.91003 1.21089 1.21696 1.28900 1.04084 1.04057 0.90297 1.25800 0.96621 0.99143 0.95355 1.69343 1.43823 1.33302 1.09575 0.85283 0.77925 0.78891 0.78191 1.18784 1.20356 1.20844 1.23384 1.00713 0.79993 0.97021 1.23077 0.89995 0.96964 0.91138 1.67963 1.39913 0.97967 1.14848 1.19538 0.90570 0.93115 0.97233 1.21062 1.01153 0.89944 1.01605 1.21467 0.95045 0.98327 0.94666 1.21441 0.94068 0.99485 0.97882 1.21404 1.01686 0.90102 0.98010 1.18916 0.93892 0.94758 1.05326 0.88459 0.92211 0.87881 0.88174 0.92925 0.75529 0.91401 0.92356 0.87119 0.82053 0.83800 0.81319 0.81294 0.82556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 8.50 71.24 0.61 -2.57 16 2 C 0.03 1.07 5.98 -19.12 -0.11 0.96 16 3 C -0.21 -7.88 5.76 -20.00 -0.12 -8.00 16 4 C 0.58 24.69 7.25 86.76 0.63 25.31 16 5 O -0.58 -26.32 15.38 -3.93 -0.06 -26.38 16 6 N -0.63 -27.03 3.63 -861.88 -3.13 -30.16 16 7 C 0.08 3.62 5.94 83.26 0.49 4.11 16 8 C 0.22 10.59 1.58 -11.12 -0.02 10.57 16 9 O -0.59 -31.08 13.55 -148.98 -2.02 -33.10 16 10 C -0.55 -27.01 8.70 25.60 0.22 -26.78 16 11 H 0.08 3.71 7.81 -2.91 -0.02 3.69 16 12 C 0.03 1.52 5.39 84.66 0.46 1.98 16 13 N -0.92 -46.73 11.01 21.45 0.24 -46.49 16 14 Si 0.97 39.07 29.54 68.60 2.03 41.09 16 15 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 16 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 17 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 18 C 0.11 4.80 8.02 83.17 0.67 5.47 16 19 C 0.16 5.73 10.10 85.41 0.86 6.59 16 20 N -0.50 -17.01 10.30 -187.70 -1.93 -18.95 16 21 C 0.12 3.44 6.61 40.29 0.27 3.71 16 22 C -0.12 -2.60 9.97 22.34 0.22 -2.37 16 23 C -0.08 -1.08 9.94 22.05 0.22 -0.86 16 24 C -0.11 -1.48 9.96 22.05 0.22 -1.26 16 25 C -0.09 -1.75 9.31 22.34 0.21 -1.54 16 26 C -0.13 -3.52 5.74 -21.29 -0.12 -3.64 16 27 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.06 2.03 6.12 -2.39 -0.01 2.02 16 29 H 0.10 2.04 6.75 -2.39 -0.02 2.02 16 30 H 0.10 3.96 7.95 -2.38 -0.02 3.94 16 31 H 0.05 2.39 8.12 -2.38 -0.02 2.37 16 32 H 0.39 20.98 6.32 -74.06 -0.47 20.51 16 33 H 0.28 13.27 8.31 -92.71 -0.77 12.50 16 34 H 0.06 2.60 8.14 -2.38 -0.02 2.59 16 35 H 0.11 4.22 8.10 -2.39 -0.02 4.20 16 36 H 0.16 5.50 6.56 -2.91 -0.02 5.48 16 37 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 39 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 40 H 0.16 2.09 6.54 -2.91 -0.02 2.07 16 Total: -1.00 -64.74 336.54 0.45 -64.29 By element: Atomic # 1 Polarization: 37.41 SS G_CDS: 0.62 Total: 38.03 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 4.71 Total: 11.68 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -4.83 Total: -95.61 kcal Atomic # 8 Polarization: -57.40 SS G_CDS: -2.08 Total: -59.48 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.09 kcal Total: -64.74 0.45 -64.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619444087.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.178 kcal (2) G-P(sol) polarization free energy of solvation -64.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds