Wall clock time and date at job start Fri Apr 10 2020 22:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38289 * 119.92759 * 2 1 4 4 C 1.38103 * 120.07317 * 180.02562 * 3 2 1 5 5 C 1.38893 * 119.92890 * 359.97438 * 4 3 2 6 6 N 1.39846 * 120.07662 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00218 * 188.00969 * 6 5 4 8 8 C 1.50700 * 109.46856 * 280.27404 * 7 6 5 9 9 H 1.08006 * 119.99965 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00088 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00055 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99864 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47012 * 90.00180 * 12 10 8 14 14 H 1.48499 * 109.47154 * 209.99580 * 12 10 8 15 15 H 1.48499 * 109.47522 * 330.00054 * 12 10 8 16 16 C 1.34783 * 119.99986 * 7.99974 * 6 5 4 17 17 O 1.21602 * 119.99720 * 7.75625 * 16 6 5 18 18 C 1.47490 * 120.00277 * 187.75132 * 16 6 5 19 19 C 1.40001 * 120.59790 * 328.10378 * 18 16 6 20 20 C 1.38337 * 118.35123 * 179.97438 * 19 18 16 21 21 C 1.38367 * 119.45433 * 0.26972 * 20 19 18 22 22 N 1.31878 * 121.18901 * 359.40670 * 21 20 19 23 23 C 1.32240 * 121.79960 * 0.63244 * 22 21 20 24 24 O 1.35427 * 119.79876 * 179.68100 * 23 22 21 25 25 C 1.38890 * 119.85248 * 0.24610 * 5 4 3 26 26 C 1.38113 * 119.92648 * 359.49852 * 25 5 4 27 27 H 1.08996 * 109.47508 * 89.99796 * 1 2 3 28 28 H 1.09000 * 109.47093 * 210.00066 * 1 2 3 29 29 H 1.09005 * 109.46950 * 329.99972 * 1 2 3 30 30 H 1.08000 * 119.96441 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.04125 * 179.97438 * 4 3 2 32 32 H 1.08995 * 109.47475 * 40.27147 * 7 6 5 33 33 H 1.09002 * 109.47133 * 160.27893 * 7 6 5 34 34 H 0.96992 * 120.00415 * 179.97438 * 11 10 8 35 35 H 1.08001 * 120.82712 * 359.95089 * 19 18 16 36 36 H 1.07996 * 120.27279 * 180.02562 * 20 19 18 37 37 H 1.07996 * 119.40077 * 179.72260 * 21 20 19 38 38 H 0.96699 * 114.00339 * 269.98295 * 24 23 22 39 39 H 1.08001 * 120.03631 * 179.73103 * 25 5 4 40 40 H 1.07997 * 119.96193 * 180.23374 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2020 -0.0005 5 6 4.2739 0.0000 -0.0005 6 7 5.6724 0.0000 -0.0016 7 6 6.4048 -1.2564 -0.1784 8 6 6.4374 -2.0069 1.1281 9 1 5.9607 -1.5894 2.0027 10 6 7.0768 -3.2259 1.2071 11 7 7.6577 -3.7340 0.1423 12 14 7.1179 -4.1557 2.8267 13 1 5.9356 -5.0500 2.9142 14 1 8.3591 -4.9676 2.9001 15 1 7.0915 -3.1888 3.9535 16 6 6.3465 1.1559 0.1598 17 8 5.7470 2.1744 0.4464 18 6 7.8111 1.1856 -0.0111 19 6 8.5895 0.0686 0.3152 20 6 9.9589 0.1472 0.1361 21 6 10.5156 1.3170 -0.3500 22 7 9.7628 2.3554 -0.6568 23 6 8.4494 2.3335 -0.5042 24 8 7.7161 3.4255 -0.8263 25 6 3.5780 -1.2019 -0.0052 26 6 2.1969 -1.1984 0.0007 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6551 2.1328 0.0004 31 1 4.1162 2.1383 -0.0010 32 1 5.9069 -1.8640 -0.9340 33 1 7.4240 -1.0409 -0.4991 34 1 8.1078 -4.5914 0.1979 35 1 8.1322 -0.8320 0.6976 36 1 10.5888 -0.6963 0.3773 37 1 11.5852 1.3789 -0.4852 38 1 7.5936 4.0466 -0.0953 39 1 4.1162 -2.1382 -0.0096 40 1 1.6551 -2.1327 0.0009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726940790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:07 Heat of formation + Delta-G solvation = 21.394961 kcal Electronic energy + Delta-G solvation = -25830.523290 eV Core-core repulsion = 22191.039849 eV Total energy + Delta-G solvation = -3639.483440 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.86214 -39.52660 -37.85219 -36.91463 -35.55397 -33.27080 -32.53451 -31.10921 -30.35192 -30.00834 -27.89607 -26.20411 -24.15843 -23.38308 -23.11601 -21.75969 -21.12782 -19.57464 -18.43492 -17.10817 -16.93271 -16.54901 -16.18017 -15.72609 -15.37003 -14.82920 -14.70846 -14.27668 -14.23997 -13.82214 -13.38578 -13.29632 -13.03670 -12.93213 -12.78600 -12.56330 -12.10724 -11.91075 -11.82891 -11.47637 -11.40482 -11.19511 -11.09140 -10.66327 -10.56303 -10.35753 -10.18053 -9.51325 -9.36058 -9.17186 -8.88122 -8.71149 -8.60915 -8.33427 -7.14445 -6.46678 -4.59064 0.90201 1.46975 1.88873 2.01483 3.08011 3.16300 3.17909 3.23408 3.49628 3.78011 4.07316 4.14309 4.45061 4.79324 4.82842 5.03828 5.25735 5.31581 5.35654 5.40214 5.59401 5.62087 5.74441 5.76278 5.80888 5.97299 6.12289 6.16640 6.26445 6.39877 6.50364 6.51411 6.69128 6.83267 6.86733 6.97373 6.99320 7.15103 7.25812 7.47221 7.65871 7.71673 7.77133 7.99329 8.08536 8.49204 8.65096 9.10122 10.56757 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.009397 B = 0.006676 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.973055 B = 4192.842673 C = 6801.711606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.129 4.129 3 C -0.108 4.108 4 C -0.166 4.166 5 C 0.165 3.835 6 N -0.528 5.528 7 C 0.200 3.800 8 C -0.549 4.549 9 H 0.069 0.931 10 C 0.072 3.928 11 N -0.879 5.879 12 Si 0.899 3.101 13 H -0.275 1.275 14 H -0.282 1.282 15 H -0.270 1.270 16 C 0.570 3.430 17 O -0.532 6.532 18 C -0.205 4.205 19 C -0.033 4.033 20 C -0.196 4.196 21 C 0.136 3.864 22 N -0.520 5.520 23 C 0.357 3.643 24 O -0.472 6.472 25 C -0.135 4.135 26 C -0.105 4.105 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.114 0.886 31 H 0.169 0.831 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.271 0.729 35 H 0.207 0.793 36 H 0.143 0.857 37 H 0.159 0.841 38 H 0.404 0.596 39 H 0.143 0.857 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.709 5.154 0.004 5.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.130 4.130 3 C -0.127 4.127 4 C -0.185 4.185 5 C 0.070 3.930 6 N -0.246 5.246 7 C 0.082 3.918 8 C -0.587 4.587 9 H 0.087 0.913 10 C -0.134 4.134 11 N -0.515 5.515 12 Si 0.726 3.274 13 H -0.201 1.201 14 H -0.207 1.207 15 H -0.194 1.194 16 C 0.360 3.640 17 O -0.413 6.413 18 C -0.211 4.211 19 C -0.057 4.057 20 C -0.216 4.216 21 C -0.021 4.021 22 N -0.239 5.239 23 C 0.177 3.823 24 O -0.280 6.280 25 C -0.155 4.155 26 C -0.124 4.124 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.132 0.868 31 H 0.186 0.814 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.223 0.777 36 H 0.161 0.839 37 H 0.176 0.824 38 H 0.263 0.737 39 H 0.161 0.839 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.515 6.029 -0.809 6.269 hybrid contribution -0.213 -1.364 1.482 2.025 sum -1.729 4.666 0.673 5.021 Atomic orbital electron populations 1.20663 0.92076 1.01914 1.01438 1.19782 0.95436 0.93504 1.04281 1.20846 0.93842 0.96839 1.01152 1.22353 0.94278 0.99650 1.02268 1.17963 0.82334 0.94290 0.98429 1.45771 1.04321 1.09734 1.64759 1.20524 0.93730 0.79094 0.98456 1.21398 1.36944 1.04394 0.95919 0.91272 1.24981 0.94425 0.96752 0.97247 1.69920 1.33952 1.19106 1.28517 0.86446 0.77996 0.79918 0.83080 1.20100 1.20721 1.19447 1.17925 0.86420 0.82841 0.76786 1.90426 1.68297 1.34339 1.48208 1.20965 0.94846 0.97162 1.08146 1.23640 0.93618 0.98761 0.89684 1.22198 0.96011 0.99698 1.03673 1.22684 0.99465 0.87851 0.92083 1.67233 1.05702 1.31749 1.19260 1.19073 0.86275 0.86703 0.90255 1.84626 1.69948 1.32885 1.40530 1.21173 0.93962 0.97907 1.02493 1.20745 0.93505 0.97049 1.01107 0.92045 0.92204 0.92272 0.86773 0.81399 0.93816 0.91280 0.91867 0.77652 0.83939 0.82390 0.73736 0.83941 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.01 36.00 0.36 -0.89 16 2 C -0.13 -2.05 5.88 -104.59 -0.62 -2.66 16 3 C -0.11 -1.82 9.69 -39.61 -0.38 -2.20 16 4 C -0.17 -3.25 8.95 -39.39 -0.35 -3.60 16 5 C 0.17 3.46 6.42 -83.72 -0.54 2.93 16 6 N -0.53 -11.41 2.71 -115.91 -0.31 -11.72 16 7 C 0.20 4.49 4.03 -5.19 -0.02 4.47 16 8 C -0.55 -12.94 6.56 -34.44 -0.23 -13.16 16 9 H 0.07 1.71 7.81 -52.48 -0.41 1.30 16 10 C 0.07 1.69 5.38 -17.82 -0.10 1.60 16 11 N -0.88 -21.49 13.29 55.43 0.74 -20.75 16 12 Si 0.90 18.83 29.54 -169.99 -5.02 13.81 16 13 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 14 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 15 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 16 C 0.57 12.04 7.23 -12.49 -0.09 11.95 16 17 O -0.53 -11.36 12.40 -13.25 -0.16 -11.52 16 18 C -0.20 -3.97 5.58 -104.70 -0.58 -4.56 16 19 C -0.03 -0.61 7.59 -38.88 -0.30 -0.90 16 20 C -0.20 -3.02 10.09 -39.50 -0.40 -3.42 16 21 C 0.14 1.95 11.17 -17.48 -0.20 1.76 16 22 N -0.52 -8.80 10.37 -12.98 -0.13 -8.93 16 23 C 0.36 6.48 7.74 -16.61 -0.13 6.35 16 24 O -0.47 -8.04 12.13 -36.50 -0.44 -8.48 16 25 C -0.14 -2.67 8.93 -39.39 -0.35 -3.02 16 26 C -0.11 -1.79 9.69 -39.61 -0.38 -2.18 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 29 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.17 3.44 4.78 -54.81 -0.26 3.17 16 32 H 0.04 1.04 7.18 -51.93 -0.37 0.67 16 33 H 0.07 1.56 3.87 -52.18 -0.20 1.36 16 34 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 35 H 0.21 4.31 3.53 -52.49 -0.19 4.12 16 36 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.40 5.19 9.06 45.56 0.41 5.60 16 39 H 0.14 2.99 6.02 -52.49 -0.32 2.67 16 40 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 333.80 15.07 5.03 5.03 Total: -1.00 -27.49 333.80 -8.03 -35.52 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -3.42 Total: 14.59 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -4.30 Total: -7.54 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.29 Total: -41.40 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.61 Total: -20.00 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.49 -8.03 -35.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726940790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.919 kcal (2) G-P(sol) polarization free energy of solvation -27.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds