Wall clock time and date at job start Fri Apr 10 2020 22:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38289 * 119.92759 * 2 1 4 4 C 1.38103 * 120.07317 * 180.02562 * 3 2 1 5 5 C 1.38893 * 119.92890 * 359.97438 * 4 3 2 6 6 N 1.39846 * 120.07662 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00218 * 188.00969 * 6 5 4 8 8 C 1.50700 * 109.46856 * 280.27404 * 7 6 5 9 9 H 1.08006 * 119.99965 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00088 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00055 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99864 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47012 * 90.00180 * 12 10 8 14 14 H 1.48499 * 109.47154 * 209.99580 * 12 10 8 15 15 H 1.48499 * 109.47522 * 330.00054 * 12 10 8 16 16 C 1.34783 * 119.99986 * 7.99974 * 6 5 4 17 17 O 1.21602 * 119.99720 * 7.75625 * 16 6 5 18 18 C 1.47490 * 120.00277 * 187.75132 * 16 6 5 19 19 C 1.40001 * 120.59790 * 328.10378 * 18 16 6 20 20 C 1.38337 * 118.35123 * 179.97438 * 19 18 16 21 21 C 1.38367 * 119.45433 * 0.26972 * 20 19 18 22 22 N 1.31878 * 121.18901 * 359.40670 * 21 20 19 23 23 C 1.32240 * 121.79960 * 0.63244 * 22 21 20 24 24 O 1.35427 * 119.79876 * 179.68100 * 23 22 21 25 25 C 1.38890 * 119.85248 * 0.24610 * 5 4 3 26 26 C 1.38113 * 119.92648 * 359.49852 * 25 5 4 27 27 H 1.08996 * 109.47508 * 89.99796 * 1 2 3 28 28 H 1.09000 * 109.47093 * 210.00066 * 1 2 3 29 29 H 1.09005 * 109.46950 * 329.99972 * 1 2 3 30 30 H 1.08000 * 119.96441 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.04125 * 179.97438 * 4 3 2 32 32 H 1.08995 * 109.47475 * 40.27147 * 7 6 5 33 33 H 1.09002 * 109.47133 * 160.27893 * 7 6 5 34 34 H 0.96992 * 120.00415 * 179.97438 * 11 10 8 35 35 H 1.08001 * 120.82712 * 359.95089 * 19 18 16 36 36 H 1.07996 * 120.27279 * 180.02562 * 20 19 18 37 37 H 1.07996 * 119.40077 * 179.72260 * 21 20 19 38 38 H 0.96699 * 114.00339 * 269.98295 * 24 23 22 39 39 H 1.08001 * 120.03631 * 179.73103 * 25 5 4 40 40 H 1.07997 * 119.96193 * 180.23374 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2020 -0.0005 5 6 4.2739 0.0000 -0.0005 6 7 5.6724 0.0000 -0.0016 7 6 6.4048 -1.2564 -0.1784 8 6 6.4374 -2.0069 1.1281 9 1 5.9607 -1.5894 2.0027 10 6 7.0768 -3.2259 1.2071 11 7 7.6577 -3.7340 0.1423 12 14 7.1179 -4.1557 2.8267 13 1 5.9356 -5.0500 2.9142 14 1 8.3591 -4.9676 2.9001 15 1 7.0915 -3.1888 3.9535 16 6 6.3465 1.1559 0.1598 17 8 5.7470 2.1744 0.4464 18 6 7.8111 1.1856 -0.0111 19 6 8.5895 0.0686 0.3152 20 6 9.9589 0.1472 0.1361 21 6 10.5156 1.3170 -0.3500 22 7 9.7628 2.3554 -0.6568 23 6 8.4494 2.3335 -0.5042 24 8 7.7161 3.4255 -0.8263 25 6 3.5780 -1.2019 -0.0052 26 6 2.1969 -1.1984 0.0007 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6551 2.1328 0.0004 31 1 4.1162 2.1383 -0.0010 32 1 5.9069 -1.8640 -0.9340 33 1 7.4240 -1.0409 -0.4991 34 1 8.1078 -4.5914 0.1979 35 1 8.1322 -0.8320 0.6976 36 1 10.5888 -0.6963 0.3773 37 1 11.5852 1.3789 -0.4852 38 1 7.5936 4.0466 -0.0953 39 1 4.1162 -2.1382 -0.0096 40 1 1.6551 -2.1327 0.0009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726940790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:06 Heat of formation + Delta-G solvation = 4.459789 kcal Electronic energy + Delta-G solvation = -25831.257654 eV Core-core repulsion = 22191.039849 eV Total energy + Delta-G solvation = -3640.217805 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.34348 -40.93065 -39.29326 -38.27958 -37.14381 -34.91531 -34.04717 -32.43299 -31.79216 -31.33410 -29.62634 -27.48998 -25.68289 -24.96913 -24.48562 -23.22514 -22.52567 -21.06269 -19.77929 -18.85745 -18.47163 -18.15326 -17.55230 -17.08072 -16.83311 -16.48913 -16.21153 -15.77583 -15.61933 -15.18098 -14.82815 -14.51921 -14.48572 -14.37556 -14.27561 -14.03670 -13.50887 -13.28068 -12.96488 -12.91552 -12.88439 -12.76146 -12.58455 -12.26884 -12.17127 -11.91882 -11.83135 -10.99141 -10.85795 -10.70771 -10.60844 -10.16558 -9.99149 -9.78014 -8.68585 -8.27722 -6.47754 -0.45599 0.10881 0.46491 0.56550 1.39308 1.43622 1.51567 1.71391 1.95311 2.35423 2.48621 2.76940 2.97351 3.00012 3.32881 3.76453 3.96449 4.06758 4.09781 4.11518 4.27876 4.40493 4.49522 4.50513 4.52712 4.62815 4.85044 4.92778 4.95695 5.02189 5.10916 5.18049 5.19958 5.26129 5.47036 5.52420 5.55327 5.59867 5.72275 5.80724 5.85092 6.27901 6.36371 6.50410 6.65026 6.79252 7.00863 7.24005 8.73792 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.009397 B = 0.006676 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.973055 B = 4192.842673 C = 6801.711606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.119 4.119 3 C -0.107 4.107 4 C -0.181 4.181 5 C 0.131 3.869 6 N -0.535 5.535 7 C 0.217 3.783 8 C -0.548 4.548 9 H 0.050 0.950 10 C 0.041 3.959 11 N -0.901 5.901 12 Si 0.952 3.048 13 H -0.277 1.277 14 H -0.271 1.271 15 H -0.274 1.274 16 C 0.560 3.440 17 O -0.544 6.544 18 C -0.227 4.227 19 C -0.050 4.050 20 C -0.188 4.188 21 C 0.152 3.848 22 N -0.526 5.526 23 C 0.353 3.647 24 O -0.481 6.481 25 C -0.153 4.153 26 C -0.106 4.106 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.144 0.856 31 H 0.157 0.843 32 H 0.019 0.981 33 H 0.071 0.929 34 H 0.275 0.725 35 H 0.182 0.818 36 H 0.169 0.831 37 H 0.209 0.791 38 H 0.419 0.581 39 H 0.121 0.879 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.874 5.354 0.313 5.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.120 4.120 3 C -0.125 4.125 4 C -0.201 4.201 5 C 0.036 3.964 6 N -0.254 5.254 7 C 0.097 3.903 8 C -0.586 4.586 9 H 0.068 0.932 10 C -0.162 4.162 11 N -0.538 5.538 12 Si 0.777 3.223 13 H -0.203 1.203 14 H -0.196 1.196 15 H -0.199 1.199 16 C 0.352 3.648 17 O -0.426 6.426 18 C -0.234 4.234 19 C -0.075 4.075 20 C -0.208 4.208 21 C -0.004 4.004 22 N -0.246 5.246 23 C 0.174 3.826 24 O -0.292 6.292 25 C -0.173 4.173 26 C -0.124 4.124 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.162 0.838 31 H 0.174 0.826 32 H 0.037 0.963 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.199 0.801 36 H 0.187 0.813 37 H 0.226 0.774 38 H 0.280 0.720 39 H 0.139 0.861 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.697 6.242 -0.495 6.488 hybrid contribution -0.197 -1.377 1.362 1.947 sum -1.894 4.865 0.868 5.292 Atomic orbital electron populations 1.20740 0.88566 1.03516 1.02982 1.20253 0.97845 0.92383 1.01552 1.21207 0.92768 0.98726 0.99810 1.22347 0.95684 0.98579 1.03444 1.18300 0.82260 0.95362 1.00470 1.45783 1.04870 1.09522 1.65187 1.20242 0.93520 0.79228 0.97261 1.21305 1.36877 1.04856 0.95577 0.93189 1.25503 0.94000 0.97118 0.99622 1.69980 1.34493 1.19506 1.29808 0.85633 0.78136 0.78654 0.79843 1.20251 1.19625 1.19890 1.18307 0.87382 0.82581 0.76573 1.90396 1.68853 1.34418 1.48896 1.20939 0.93882 0.98345 1.10202 1.23418 0.95300 0.97810 0.90936 1.22485 0.94647 1.01071 1.02590 1.23471 1.01343 0.86320 0.89300 1.67386 1.04935 1.32715 1.19555 1.19124 0.86857 0.86508 0.90109 1.84572 1.70097 1.32959 1.41522 1.21132 0.95363 0.96651 1.04163 1.21079 0.92372 0.98948 1.00018 0.90349 0.90786 0.90596 0.83817 0.82622 0.96329 0.91154 0.91545 0.80108 0.81344 0.77436 0.71986 0.86145 0.83971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 10.01 71.23 0.71 -1.34 16 2 C -0.12 -3.56 5.88 -19.84 -0.12 -3.67 16 3 C -0.11 -3.47 9.69 22.25 0.22 -3.26 16 4 C -0.18 -7.29 8.95 22.39 0.20 -7.09 16 5 C 0.13 5.77 6.42 38.18 0.25 6.01 16 6 N -0.53 -24.64 2.71 -638.89 -1.73 -26.37 16 7 C 0.22 10.34 4.03 85.63 0.35 10.69 16 8 C -0.55 -27.13 6.56 25.60 0.17 -26.96 16 9 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 10 C 0.04 1.99 5.38 84.66 0.46 2.44 16 11 N -0.90 -44.87 13.29 21.45 0.28 -44.59 16 12 Si 0.95 39.00 29.54 68.60 2.03 41.03 16 13 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 14 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 15 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 16 C 0.56 24.98 7.23 86.68 0.63 25.60 16 17 O -0.54 -24.37 12.40 13.67 0.17 -24.20 16 18 C -0.23 -9.11 5.58 -19.91 -0.11 -9.22 16 19 C -0.05 -1.90 7.59 22.72 0.17 -1.73 16 20 C -0.19 -5.52 10.09 22.32 0.23 -5.29 16 21 C 0.15 3.95 11.17 84.72 0.95 4.89 16 22 N -0.53 -16.95 10.37 -307.98 -3.19 -20.15 16 23 C 0.35 12.87 7.74 85.13 0.66 13.53 16 24 O -0.48 -16.55 12.13 -69.51 -0.84 -17.40 16 25 C -0.15 -6.31 8.93 22.40 0.20 -6.11 16 26 C -0.11 -3.53 9.69 22.25 0.22 -3.32 16 27 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 29 H 0.08 1.32 8.08 -2.38 -0.02 1.31 16 30 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 31 H 0.16 6.65 4.78 -39.66 -0.19 6.46 16 32 H 0.02 0.96 7.18 -2.39 -0.02 0.95 16 33 H 0.07 3.36 3.87 -2.63 -0.01 3.35 16 34 H 0.28 12.91 8.31 -92.71 -0.77 12.13 16 35 H 0.18 7.91 3.53 -2.91 -0.01 7.90 16 36 H 0.17 4.00 8.06 -2.91 -0.02 3.97 16 37 H 0.21 3.28 8.06 -2.91 -0.02 3.26 16 38 H 0.42 10.91 9.06 -74.06 -0.67 10.24 16 39 H 0.12 5.42 6.02 -2.91 -0.02 5.41 16 40 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -61.92 333.80 2.13 -59.79 By element: Atomic # 1 Polarization: 36.45 SS G_CDS: 0.26 Total: 36.71 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 5.16 Total: -4.82 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -4.64 Total: -91.11 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.67 Total: -41.59 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -61.92 2.13 -59.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726940790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.251 kcal (2) G-P(sol) polarization free energy of solvation -61.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds