Wall clock time and date at job start Fri Apr 10 2020 22:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38286 * 119.92743 * 2 1 4 4 C 1.38107 * 120.06828 * 180.02562 * 3 2 1 5 5 C 1.38892 * 119.92903 * 359.97438 * 4 3 2 6 6 N 1.39849 * 120.07038 * 179.97438 * 5 4 3 7 7 C 1.46502 * 119.99797 * 187.90010 * 6 5 4 8 8 C 1.50703 * 109.47001 * 278.37775 * 7 6 5 9 9 H 1.08002 * 119.99987 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00052 * 180.02562 * 8 7 6 11 11 N 1.31509 * 119.99990 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99648 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47397 * 90.00427 * 12 10 8 14 14 H 1.48507 * 109.46822 * 209.99906 * 12 10 8 15 15 H 1.48498 * 109.47355 * 329.99876 * 12 10 8 16 16 C 1.34778 * 120.00264 * 7.90276 * 6 5 4 17 17 O 1.21563 * 119.99559 * 7.06811 * 16 6 5 18 18 C 1.47806 * 119.99981 * 187.06742 * 16 6 5 19 19 C 1.40025 * 120.55750 * 330.07059 * 18 16 6 20 20 C 1.38358 * 118.31872 * 179.97438 * 19 18 16 21 21 C 1.38333 * 119.31865 * 359.74397 * 20 19 18 22 22 N 1.32037 * 121.07005 * 0.53768 * 21 20 19 23 23 O 1.41600 * 119.07663 * 179.72792 * 22 21 20 24 24 C 1.31818 * 121.85026 * 359.44453 * 22 21 20 25 25 C 1.38891 * 119.85478 * 0.25503 * 5 4 3 26 26 C 1.38105 * 119.92804 * 359.51240 * 25 5 4 27 27 H 1.09000 * 109.47380 * 89.99408 * 1 2 3 28 28 H 1.09000 * 109.47366 * 209.99814 * 1 2 3 29 29 H 1.09008 * 109.46809 * 329.99619 * 1 2 3 30 30 H 1.07996 * 119.96564 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.03548 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47412 * 38.37519 * 7 6 5 33 33 H 1.09003 * 109.47277 * 158.37686 * 7 6 5 34 34 H 0.97003 * 119.99819 * 179.97438 * 11 10 8 35 35 H 1.08002 * 120.84112 * 0.02562 * 19 18 16 36 36 H 1.08000 * 120.33897 * 179.97438 * 20 19 18 37 37 H 1.07994 * 119.46680 * 180.28403 * 21 20 19 38 38 H 1.07995 * 119.72142 * 180.25671 * 24 22 21 39 39 H 1.08003 * 120.03508 * 179.72320 * 25 5 4 40 40 H 1.07995 * 119.96627 * 180.23636 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 -0.0001 -0.0005 6 7 5.6724 -0.0001 -0.0016 7 6 6.4047 -1.2570 -0.1760 8 6 6.4776 -1.9830 1.1426 9 1 6.0241 -1.5512 2.0226 10 6 7.1240 -3.1980 1.2258 11 7 7.1881 -3.8313 2.3766 12 14 7.9101 -3.9438 -0.2958 13 1 9.3178 -3.4830 -0.4021 14 1 7.8806 -5.4250 -0.1928 15 1 7.1569 -3.5164 -1.5021 16 6 6.3465 1.1560 0.1578 17 8 5.7458 2.1771 0.4303 18 6 7.8160 1.1823 0.0013 19 6 8.5847 0.0522 0.3056 20 6 9.9564 0.1278 0.1417 21 6 10.5197 1.3045 -0.3183 22 7 9.7709 2.3569 -0.5925 23 8 10.3925 3.5419 -1.0556 24 6 8.4604 2.3336 -0.4526 25 6 3.5779 -1.2020 -0.0054 26 6 2.1968 -1.1985 0.0000 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6552 2.1327 -0.0004 31 1 4.1163 2.1382 -0.0010 32 1 5.8881 -1.8803 -0.9059 33 1 7.4135 -1.0437 -0.5296 34 1 7.6426 -4.6863 2.4350 35 1 8.1185 -0.8559 0.6585 36 1 10.5806 -0.7242 0.3671 37 1 11.5897 1.3647 -0.4515 38 1 7.8808 3.2131 -0.6909 39 1 4.1161 -2.1384 -0.0099 40 1 1.6550 -2.1327 0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726942363.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:09 Heat of formation + Delta-G solvation = 75.823491 kcal Electronic energy + Delta-G solvation = -25596.177053 eV Core-core repulsion = 21959.053811 eV Total energy + Delta-G solvation = -3637.123242 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.85890 -41.54122 -39.52056 -37.67039 -35.79778 -34.78690 -33.43270 -32.54932 -31.83891 -31.16834 -30.23878 -27.78065 -25.94751 -25.24139 -24.90664 -23.23923 -22.75185 -21.23593 -19.22628 -19.00596 -18.77038 -18.41380 -17.86414 -17.14225 -16.72037 -16.39695 -16.29756 -16.08344 -15.78132 -15.46907 -15.17053 -14.78446 -14.53913 -14.45698 -14.34741 -14.01481 -13.55209 -13.47050 -12.99992 -12.90540 -12.66607 -12.57291 -12.48274 -12.20306 -11.92873 -11.88473 -11.65117 -10.96595 -10.84882 -10.81894 -10.80501 -10.54615 -9.99452 -9.79458 -8.70523 -8.36995 -6.50617 -0.92002 -0.52871 0.36127 0.55187 1.20846 1.38212 1.41680 1.46936 1.53180 1.86396 2.11354 2.29196 2.92051 2.95497 3.02239 3.27438 3.38432 3.58638 3.68527 4.00003 4.10712 4.14573 4.24362 4.29711 4.44166 4.56275 4.59344 4.62181 4.72487 4.76225 4.92170 4.92718 4.96174 5.16418 5.19182 5.23321 5.39774 5.52613 5.59569 5.63962 5.78477 5.79762 6.01299 6.23325 6.33896 6.60285 6.79194 7.14215 8.77099 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.010542 B = 0.005915 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.458516 B = 4732.462329 C = 7009.423844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.115 4.115 3 C -0.109 4.109 4 C -0.177 4.177 5 C 0.128 3.872 6 N -0.521 5.521 7 C 0.178 3.822 8 C -0.547 4.547 9 H 0.037 0.963 10 C 0.044 3.956 11 N -0.918 5.918 12 Si 0.910 3.090 13 H -0.227 1.227 14 H -0.286 1.286 15 H -0.245 1.245 16 C 0.561 3.439 17 O -0.540 6.540 18 C -0.140 4.140 19 C -0.065 4.065 20 C -0.108 4.108 21 C 0.106 3.894 22 N -0.146 5.146 23 O -0.617 6.617 24 C 0.130 3.870 25 C -0.146 4.146 26 C -0.107 4.107 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.143 0.857 31 H 0.159 0.841 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.275 0.725 35 H 0.203 0.797 36 H 0.215 0.785 37 H 0.218 0.782 38 H 0.185 0.815 39 H 0.127 0.873 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.537 -0.351 -6.422 7.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.116 4.116 3 C -0.127 4.127 4 C -0.197 4.197 5 C 0.034 3.966 6 N -0.239 5.239 7 C 0.058 3.942 8 C -0.585 4.585 9 H 0.055 0.945 10 C -0.160 4.160 11 N -0.555 5.555 12 Si 0.731 3.269 13 H -0.150 1.150 14 H -0.212 1.212 15 H -0.168 1.168 16 C 0.351 3.649 17 O -0.421 6.421 18 C -0.144 4.144 19 C -0.089 4.089 20 C -0.126 4.126 21 C -0.038 4.038 22 N 0.172 4.828 23 O -0.668 6.668 24 C -0.017 4.017 25 C -0.167 4.167 26 C -0.125 4.125 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.161 0.839 31 H 0.176 0.824 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.219 0.781 36 H 0.231 0.769 37 H 0.234 0.766 38 H 0.202 0.798 39 H 0.145 0.855 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.484 0.397 -6.337 7.243 hybrid contribution 0.399 -0.424 -0.056 0.585 sum -3.086 -0.027 -6.394 7.099 Atomic orbital electron populations 1.20763 0.88765 1.03470 1.03069 1.20276 0.97808 0.92515 1.01007 1.21215 0.92926 0.98715 0.99846 1.22354 0.95650 0.98643 1.03037 1.18175 0.81721 0.95358 1.01309 1.45381 1.04932 1.08670 1.64913 1.20853 0.94601 0.81079 0.97668 1.21097 1.37876 1.05369 0.94136 0.94495 1.25629 0.95493 0.96043 0.98790 1.70005 1.42142 1.16243 1.27071 0.86276 0.81957 0.78663 0.80027 1.15015 1.21196 1.16828 1.18034 0.86604 0.82979 0.77271 1.90509 1.68454 1.34406 1.48689 1.20071 0.94154 0.94773 1.05422 1.23997 0.95353 0.99699 0.89888 1.22394 0.94629 0.98507 0.97054 1.23589 1.01721 0.84899 0.93587 1.43153 1.04533 1.11440 1.23656 1.97606 1.74266 1.14395 1.80533 1.22447 0.84526 0.99492 0.95284 1.21135 0.95293 0.96697 1.03528 1.21104 0.92595 0.98917 0.99917 0.90143 0.90856 0.90752 0.83919 0.82424 0.93109 0.90220 0.91494 0.78131 0.76860 0.76571 0.79806 0.85541 0.83899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.91 10.01 71.24 0.71 -1.20 16 2 C -0.12 -3.10 5.88 -19.84 -0.12 -3.22 16 3 C -0.11 -3.19 9.69 22.25 0.22 -2.98 16 4 C -0.18 -6.35 8.96 22.40 0.20 -6.15 16 5 C 0.13 4.92 6.44 38.17 0.25 5.17 16 6 N -0.52 -20.00 2.70 -638.55 -1.72 -21.73 16 7 C 0.18 6.63 3.09 85.63 0.26 6.89 16 8 C -0.55 -24.61 7.24 25.60 0.19 -24.43 16 9 H 0.04 2.02 8.06 -2.91 -0.02 1.99 16 10 C 0.04 1.96 5.34 84.66 0.45 2.41 16 11 N -0.92 -46.65 13.96 21.45 0.30 -46.35 16 12 Si 0.91 31.35 27.30 68.60 1.87 33.22 16 13 H -0.23 -6.51 7.11 99.48 0.71 -5.80 16 14 H -0.29 -10.45 7.11 99.48 0.71 -9.74 16 15 H -0.24 -7.85 6.54 99.48 0.65 -7.20 16 16 C 0.56 21.03 7.38 86.77 0.64 21.67 16 17 O -0.54 -21.77 13.27 -3.91 -0.05 -21.82 16 18 C -0.14 -4.48 5.60 -20.00 -0.11 -4.60 16 19 C -0.07 -1.84 7.62 22.73 0.17 -1.67 16 20 C -0.11 -2.18 10.10 22.32 0.23 -1.95 16 21 C 0.11 2.46 10.68 84.68 0.90 3.37 16 22 N -0.15 -4.88 3.57 -194.62 -0.70 -5.57 16 23 O -0.62 -28.07 20.05 -38.78 -0.78 -28.85 16 24 C 0.13 4.19 10.27 85.01 0.87 5.06 16 25 C -0.15 -5.29 8.96 22.39 0.20 -5.09 16 26 C -0.11 -3.19 9.69 22.25 0.22 -2.97 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.07 1.20 8.08 -2.39 -0.02 1.19 16 29 H 0.07 1.20 8.08 -2.38 -0.02 1.18 16 30 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 31 H 0.16 5.98 4.76 -42.01 -0.20 5.78 16 32 H 0.05 1.86 6.12 -2.39 -0.01 1.85 16 33 H 0.08 2.61 3.40 -2.50 -0.01 2.60 16 34 H 0.28 13.03 8.31 -92.71 -0.77 12.26 16 35 H 0.20 6.61 3.03 -2.91 -0.01 6.60 16 36 H 0.21 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.22 3.46 8.06 -2.91 -0.02 3.44 16 38 H 0.18 5.89 7.93 -2.91 -0.02 5.87 16 39 H 0.13 4.84 6.07 -2.91 -0.02 4.82 16 40 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -70.50 332.77 5.05 -65.45 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: 0.85 Total: 35.32 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 5.28 Total: -9.67 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -2.12 Total: -73.65 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -0.83 Total: -50.67 kcal Atomic # 14 Polarization: 31.35 SS G_CDS: 1.87 Total: 33.22 kcal Total: -70.50 5.05 -65.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726942363.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.272 kcal (2) G-P(sol) polarization free energy of solvation -70.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds