Wall clock time and date at job start Fri Apr 10 2020 22:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30442 * 125.98635 * 2 1 4 4 N 1.39936 * 108.91107 * 180.28000 * 3 2 1 5 5 C 1.46506 * 125.75665 * 179.69252 * 4 3 2 6 6 C 1.34305 * 108.48434 * 359.71560 * 4 3 2 7 7 C 1.38100 * 107.40427 * 0.02562 * 6 4 3 8 8 C 1.47557 * 126.41866 * 180.02562 * 7 6 4 9 9 O 1.21755 * 119.99915 * 180.02562 * 8 7 6 10 10 C 1.46358 * 119.99975 * 0.02562 * 8 7 6 11 11 C 1.34946 * 120.00087 * 186.52338 * 10 8 7 12 12 C 1.47160 * 120.00034 * 11.43642 * 11 10 8 13 13 C 1.39936 * 120.14058 * 43.09051 * 12 11 10 14 14 C 1.37923 * 119.96240 * 179.72319 * 13 12 11 15 15 C 1.38299 * 120.24969 * 359.97438 * 14 13 12 16 16 C 1.39009 * 120.28201 * 0.02562 * 15 14 13 17 17 O 1.35757 * 119.98193 * 180.02562 * 16 15 14 18 18 C 1.34835 * 117.00191 * 185.77841 * 17 16 15 19 19 H 1.08006 * 119.99732 * 5.40553 * 18 17 16 20 20 C 1.38651 * 120.00064 * 185.41031 * 18 17 16 21 21 N 1.31552 * 120.00421 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 119.99916 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46549 * 59.99756 * 22 20 18 24 24 H 1.48491 * 109.47133 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47001 * 300.00026 * 22 20 18 26 26 C 1.38561 * 120.03427 * 0.02562 * 16 15 14 27 27 H 1.09000 * 109.47203 * 270.19604 * 1 2 3 28 28 H 1.09005 * 109.46573 * 30.19267 * 1 2 3 29 29 H 1.08992 * 109.47485 * 150.18721 * 1 2 3 30 30 H 1.08996 * 109.47260 * 270.03121 * 5 4 3 31 31 H 1.08998 * 109.46725 * 30.02897 * 5 4 3 32 32 H 1.08998 * 109.46673 * 150.02485 * 5 4 3 33 33 H 1.08008 * 126.29469 * 180.02562 * 6 4 3 34 34 H 1.08003 * 120.00016 * 6.53014 * 10 8 7 35 35 H 1.08005 * 119.99986 * 191.43197 * 11 10 8 36 36 H 1.07997 * 120.01893 * 359.71886 * 13 12 11 37 37 H 1.07999 * 119.87519 * 180.02562 * 14 13 12 38 38 H 1.07996 * 119.85690 * 180.02562 * 15 14 13 39 39 H 0.97000 * 120.00531 * 179.97438 * 21 20 18 40 40 H 1.08000 * 120.12433 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6112 0.6446 -0.0065 5 6 4.7786 1.5297 -0.0149 6 6 3.6442 -0.6980 -0.0041 7 6 2.3370 -1.1434 0.0032 8 6 1.8907 -2.5499 0.0086 9 8 0.7016 -2.8112 0.0144 10 6 2.8776 -3.6307 0.0068 11 6 2.4745 -4.9122 -0.1211 12 6 1.0868 -5.2119 -0.5087 13 6 0.4683 -4.4796 -1.5282 14 6 -0.8305 -4.7673 -1.8924 15 6 -1.5254 -5.7783 -1.2539 16 6 -0.9210 -6.5123 -0.2398 17 8 -1.6086 -7.5037 0.3824 18 6 -1.0100 -8.0963 1.4353 19 1 -0.0667 -7.7197 1.8025 20 6 -1.6053 -9.1892 2.0465 21 7 -2.7544 -9.6478 1.5995 22 14 -0.7755 -10.0107 3.5047 23 1 -0.6192 -9.0254 4.6047 24 1 -1.6091 -11.1468 3.9731 25 1 0.5610 -10.5122 3.0958 26 6 0.3829 -6.2324 0.1362 27 1 -0.3633 0.0035 1.0277 28 1 -0.3633 0.8883 -0.5169 29 1 -0.3634 -0.8916 -0.5109 30 1 5.0621 1.7474 -1.0446 31 1 4.5333 2.4593 0.4986 32 1 5.6087 1.0410 0.4950 33 1 4.5302 -1.3158 -0.0074 34 1 3.9284 -3.4027 0.1080 35 1 3.1703 -5.7179 0.0610 36 1 1.0075 -3.6895 -2.0294 37 1 -1.3064 -4.2015 -2.6796 38 1 -2.5420 -5.9986 -1.5445 39 1 -3.1707 -10.4126 2.0268 40 1 0.8541 -6.8020 0.9236 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727744718.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:12 Heat of formation + Delta-G solvation = 70.381805 kcal Electronic energy + Delta-G solvation = -24497.425092 eV Core-core repulsion = 20860.065881 eV Total energy + Delta-G solvation = -3637.359211 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.48486 -39.36497 -38.33853 -36.23129 -34.16762 -33.30996 -32.12850 -31.08609 -29.56390 -29.30043 -28.43245 -26.28740 -25.21432 -23.94660 -22.20303 -21.49575 -20.79551 -19.71146 -18.53520 -17.64340 -17.39021 -16.57689 -15.93324 -15.52566 -15.12535 -14.80506 -14.48283 -14.34437 -13.95778 -13.85973 -13.66346 -13.39000 -13.27700 -13.15195 -13.09632 -12.70223 -12.34352 -12.27805 -12.13270 -11.98937 -11.59984 -11.32441 -11.00332 -10.84845 -10.66156 -10.61048 -10.37949 -9.50437 -9.40159 -9.35351 -9.26025 -8.75410 -8.64637 -7.76333 -6.94256 -6.35519 -3.94350 0.85219 1.55152 2.13581 2.15287 2.50926 2.73613 3.17537 3.19426 3.21391 3.71232 4.03775 4.11083 4.38464 4.50912 4.70500 4.71122 4.75242 4.97678 5.08280 5.13583 5.19464 5.39547 5.40810 5.49419 5.65436 5.70302 5.82382 5.88618 5.99168 6.01143 6.16792 6.30415 6.45780 6.50592 6.53645 6.63723 6.85388 6.96529 7.16648 7.35140 7.43887 7.46427 7.51342 7.91714 8.04927 8.08881 9.10188 9.83019 10.83039 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.021298 B = 0.002961 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.349789 B = 9455.385692 C = 9953.360136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.127 3.873 3 N -0.309 5.309 4 N -0.368 5.368 5 C 0.098 3.902 6 C 0.105 3.895 7 C -0.300 4.300 8 C 0.439 3.561 9 O -0.428 6.428 10 C -0.251 4.251 11 C 0.003 3.997 12 C -0.047 4.047 13 C -0.134 4.134 14 C -0.087 4.087 15 C -0.179 4.179 16 C 0.144 3.856 17 O -0.183 6.183 18 C -0.389 4.389 19 H 0.088 0.912 20 C 0.038 3.962 21 N -0.866 5.866 22 Si 0.938 3.062 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.271 1.271 26 C -0.200 4.200 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.184 0.816 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.269 0.731 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.527 17.990 -3.602 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.040 4.040 3 N -0.131 5.131 4 N -0.146 5.146 5 C -0.043 4.043 6 C -0.046 4.046 7 C -0.312 4.312 8 C 0.318 3.682 9 O -0.304 6.304 10 C -0.270 4.270 11 C -0.015 4.015 12 C -0.047 4.047 13 C -0.153 4.153 14 C -0.105 4.105 15 C -0.198 4.198 16 C 0.092 3.908 17 O -0.087 6.087 18 C -0.466 4.466 19 H 0.106 0.894 20 C -0.165 4.165 21 N -0.502 5.502 22 Si 0.763 3.237 23 H -0.196 1.196 24 H -0.204 1.204 25 H -0.196 1.196 26 C -0.219 4.219 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.201 0.799 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.079 0.921 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 15.683 18.960 -3.571 24.863 hybrid contribution 0.975 -1.135 0.863 1.727 sum 16.657 17.825 -2.708 24.546 Atomic orbital electron populations 1.20368 0.85661 1.04105 1.03645 1.22608 0.97298 0.89228 0.94845 1.77163 0.85972 1.22871 1.27127 1.48349 1.06122 1.04892 1.55239 1.21943 0.83888 0.94750 1.03699 1.23165 0.99244 0.84849 0.97352 1.21045 0.91990 0.96489 1.21717 1.19419 0.88905 0.86178 0.73710 1.90812 1.18617 1.85029 1.35921 1.23209 0.99451 0.93779 1.10579 1.22690 0.94949 0.95998 0.87881 1.18576 0.92599 0.96375 0.97140 1.20448 0.95530 0.99635 0.99644 1.20452 0.94246 0.96759 0.99076 1.20277 1.00509 0.99260 0.99757 1.19199 0.90248 0.89528 0.91870 1.84010 1.41251 1.42367 1.41078 1.21202 1.06966 1.12528 1.05911 0.89449 1.25235 0.96163 0.96045 0.99078 1.70025 1.15678 1.24160 1.40309 0.85832 0.78795 0.78821 0.80265 1.19588 1.20354 1.19610 1.21240 0.95600 1.00784 1.04314 0.90180 0.91226 0.88415 0.90390 0.89038 0.89181 0.79922 0.85760 0.85352 0.88359 0.87207 0.86741 0.92125 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 9.92 36.01 0.36 -0.63 16 2 C 0.13 1.73 7.26 -82.02 -0.60 1.14 16 3 N -0.31 -4.03 12.50 33.89 0.42 -3.60 16 4 N -0.37 -3.56 3.98 -67.57 -0.27 -3.83 16 5 C 0.10 0.45 11.44 59.85 0.68 1.14 16 6 C 0.10 0.98 10.96 -16.52 -0.18 0.80 16 7 C -0.30 -3.88 6.12 -104.99 -0.64 -4.52 16 8 C 0.44 6.48 6.11 -32.52 -0.20 6.28 16 9 O -0.43 -7.79 10.71 5.14 0.06 -7.73 16 10 C -0.25 -3.16 9.55 -37.49 -0.36 -3.52 16 11 C 0.00 0.05 9.81 -37.13 -0.36 -0.32 16 12 C -0.05 -0.89 4.55 -105.08 -0.48 -1.37 16 13 C -0.13 -2.49 6.60 -39.06 -0.26 -2.75 16 14 C -0.09 -1.68 10.02 -39.67 -0.40 -2.07 16 15 C -0.18 -3.98 9.99 -39.27 -0.39 -4.37 16 16 C 0.14 3.62 6.64 -39.18 -0.26 3.36 16 17 O -0.18 -5.36 9.76 0.01 0.00 -5.36 16 18 C -0.39 -11.14 9.44 30.89 0.29 -10.84 16 19 H 0.09 2.31 5.29 -52.48 -0.28 2.03 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.87 -25.93 13.67 55.48 0.76 -25.17 16 22 Si 0.94 20.89 29.55 -169.99 -5.02 15.87 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 C -0.20 -4.49 8.88 -38.90 -0.35 -4.84 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.10 1.35 6.56 -51.93 -0.34 1.01 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.18 0.93 7.38 -52.48 -0.39 0.55 16 34 H 0.12 1.05 7.20 -52.48 -0.38 0.67 16 35 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 36 H 0.10 1.67 6.96 -52.49 -0.37 1.30 16 37 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.11 2.45 8.06 -52.49 -0.42 2.03 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.13 2.81 5.71 -52.49 -0.30 2.51 16 LS Contribution 346.56 15.07 5.22 5.22 Total: -1.00 -35.97 346.56 -6.63 -42.60 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -4.57 Total: 3.55 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -3.23 Total: -21.54 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.91 Total: -32.61 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.06 Total: -13.10 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.97 -6.63 -42.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727744718.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.984 kcal (2) G-P(sol) polarization free energy of solvation -35.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds