Wall clock time and date at job start Fri Apr 10 2020 22:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30442 * 125.98635 * 2 1 4 4 N 1.39936 * 108.91107 * 180.28000 * 3 2 1 5 5 C 1.46506 * 125.75665 * 179.69252 * 4 3 2 6 6 C 1.34305 * 108.48434 * 359.71560 * 4 3 2 7 7 C 1.38100 * 107.40427 * 0.02562 * 6 4 3 8 8 C 1.47557 * 126.41866 * 180.02562 * 7 6 4 9 9 O 1.21755 * 119.99915 * 180.02562 * 8 7 6 10 10 C 1.46358 * 119.99975 * 0.02562 * 8 7 6 11 11 C 1.34946 * 120.00087 * 186.52338 * 10 8 7 12 12 C 1.47160 * 120.00034 * 11.43642 * 11 10 8 13 13 C 1.39936 * 120.14058 * 43.09051 * 12 11 10 14 14 C 1.37923 * 119.96240 * 179.72319 * 13 12 11 15 15 C 1.38299 * 120.24969 * 359.97438 * 14 13 12 16 16 C 1.39009 * 120.28201 * 0.02562 * 15 14 13 17 17 O 1.35757 * 119.98193 * 180.02562 * 16 15 14 18 18 C 1.34835 * 117.00191 * 185.77841 * 17 16 15 19 19 H 1.08006 * 119.99732 * 5.40553 * 18 17 16 20 20 C 1.38651 * 120.00064 * 185.41031 * 18 17 16 21 21 N 1.31552 * 120.00421 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 119.99916 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46549 * 59.99756 * 22 20 18 24 24 H 1.48491 * 109.47133 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47001 * 300.00026 * 22 20 18 26 26 C 1.38561 * 120.03427 * 0.02562 * 16 15 14 27 27 H 1.09000 * 109.47203 * 270.19604 * 1 2 3 28 28 H 1.09005 * 109.46573 * 30.19267 * 1 2 3 29 29 H 1.08992 * 109.47485 * 150.18721 * 1 2 3 30 30 H 1.08996 * 109.47260 * 270.03121 * 5 4 3 31 31 H 1.08998 * 109.46725 * 30.02897 * 5 4 3 32 32 H 1.08998 * 109.46673 * 150.02485 * 5 4 3 33 33 H 1.08008 * 126.29469 * 180.02562 * 6 4 3 34 34 H 1.08003 * 120.00016 * 6.53014 * 10 8 7 35 35 H 1.08005 * 119.99986 * 191.43197 * 11 10 8 36 36 H 1.07997 * 120.01893 * 359.71886 * 13 12 11 37 37 H 1.07999 * 119.87519 * 180.02562 * 14 13 12 38 38 H 1.07996 * 119.85690 * 180.02562 * 15 14 13 39 39 H 0.97000 * 120.00531 * 179.97438 * 21 20 18 40 40 H 1.08000 * 120.12433 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6112 0.6446 -0.0065 5 6 4.7786 1.5297 -0.0149 6 6 3.6442 -0.6980 -0.0041 7 6 2.3370 -1.1434 0.0032 8 6 1.8907 -2.5499 0.0086 9 8 0.7016 -2.8112 0.0144 10 6 2.8776 -3.6307 0.0068 11 6 2.4745 -4.9122 -0.1211 12 6 1.0868 -5.2119 -0.5087 13 6 0.4683 -4.4796 -1.5282 14 6 -0.8305 -4.7673 -1.8924 15 6 -1.5254 -5.7783 -1.2539 16 6 -0.9210 -6.5123 -0.2398 17 8 -1.6086 -7.5037 0.3824 18 6 -1.0100 -8.0963 1.4353 19 1 -0.0667 -7.7197 1.8025 20 6 -1.6053 -9.1892 2.0465 21 7 -2.7544 -9.6478 1.5995 22 14 -0.7755 -10.0107 3.5047 23 1 -0.6192 -9.0254 4.6047 24 1 -1.6091 -11.1468 3.9731 25 1 0.5610 -10.5122 3.0958 26 6 0.3829 -6.2324 0.1362 27 1 -0.3633 0.0035 1.0277 28 1 -0.3633 0.8883 -0.5169 29 1 -0.3634 -0.8916 -0.5109 30 1 5.0621 1.7474 -1.0446 31 1 4.5333 2.4593 0.4986 32 1 5.6087 1.0410 0.4950 33 1 4.5302 -1.3158 -0.0074 34 1 3.9284 -3.4027 0.1080 35 1 3.1703 -5.7179 0.0610 36 1 1.0075 -3.6895 -2.0294 37 1 -1.3064 -4.2015 -2.6796 38 1 -2.5420 -5.9986 -1.5445 39 1 -3.1707 -10.4126 2.0268 40 1 0.8541 -6.8020 0.9236 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727744718.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:11 Heat of formation + Delta-G solvation = 47.005398 kcal Electronic energy + Delta-G solvation = -24498.438769 eV Core-core repulsion = 20860.065881 eV Total energy + Delta-G solvation = -3638.372888 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.32145 -40.87282 -39.84308 -37.92942 -34.98515 -34.61597 -34.09466 -32.09212 -30.86045 -30.34277 -29.97756 -27.37503 -26.97475 -25.04661 -23.29331 -23.20414 -21.98853 -20.64354 -19.97417 -19.44177 -18.48788 -17.88546 -16.91820 -16.67942 -16.59687 -16.13876 -15.98114 -15.72251 -15.43236 -15.11306 -14.97293 -14.61799 -14.49235 -14.30481 -14.12050 -13.89649 -13.61295 -13.48706 -13.24404 -13.04190 -12.99031 -12.85295 -12.51589 -12.34992 -12.24068 -12.10751 -11.81610 -11.23380 -10.89577 -10.54655 -10.40496 -10.31619 -9.61779 -9.31896 -8.64372 -8.42787 -6.10757 -0.29477 0.58568 0.84545 1.02806 1.35481 1.43390 1.49487 1.52459 1.53871 2.20803 2.66895 2.90331 3.24957 3.30651 3.56524 3.59174 3.82665 3.92734 4.13510 4.18799 4.33722 4.41880 4.46559 4.52046 4.55447 4.59437 4.67398 4.72335 4.73820 4.77501 4.96948 5.02672 5.10252 5.13725 5.23644 5.29500 5.51013 5.56920 5.70569 5.74914 5.86003 6.00095 6.06388 6.26967 6.60709 6.97770 7.01629 7.85228 8.80968 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.021298 B = 0.002961 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.349789 B = 9455.385692 C = 9953.360136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.106 3.894 3 N -0.339 5.339 4 N -0.362 5.362 5 C 0.086 3.914 6 C 0.136 3.864 7 C -0.338 4.338 8 C 0.433 3.567 9 O -0.478 6.478 10 C -0.213 4.213 11 C -0.030 4.030 12 C -0.035 4.035 13 C -0.118 4.118 14 C -0.085 4.085 15 C -0.200 4.200 16 C 0.104 3.896 17 O -0.237 6.237 18 C -0.411 4.411 19 H 0.099 0.901 20 C -0.025 4.025 21 N -0.924 5.924 22 Si 1.018 2.982 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.253 1.253 26 C -0.218 4.218 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.127 0.873 33 H 0.237 0.763 34 H 0.182 0.818 35 H 0.161 0.839 36 H 0.124 0.876 37 H 0.143 0.857 38 H 0.108 0.892 39 H 0.272 0.728 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.806 20.145 -3.421 29.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.060 4.060 3 N -0.162 5.162 4 N -0.140 5.140 5 C -0.053 4.053 6 C -0.017 4.017 7 C -0.350 4.350 8 C 0.316 3.684 9 O -0.358 6.358 10 C -0.231 4.231 11 C -0.048 4.048 12 C -0.035 4.035 13 C -0.136 4.136 14 C -0.103 4.103 15 C -0.219 4.219 16 C 0.054 3.946 17 O -0.144 6.144 18 C -0.488 4.488 19 H 0.116 0.884 20 C -0.222 4.222 21 N -0.563 5.563 22 Si 0.837 3.163 23 H -0.184 1.184 24 H -0.197 1.197 25 H -0.177 1.177 26 C -0.237 4.237 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.145 0.855 33 H 0.253 0.747 34 H 0.199 0.801 35 H 0.178 0.822 36 H 0.141 0.859 37 H 0.160 0.840 38 H 0.127 0.873 39 H 0.080 0.920 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 21.010 21.196 -3.425 30.040 hybrid contribution -0.437 -1.337 0.634 1.543 sum 20.573 19.858 -2.791 28.730 Atomic orbital electron populations 1.20271 0.86295 1.03667 1.03252 1.22728 0.97567 0.90142 0.95539 1.77099 0.87856 1.23216 1.28024 1.48798 1.05986 1.05946 1.53247 1.22414 0.82926 0.94569 1.05353 1.23860 0.99361 0.84932 0.93526 1.21002 0.93659 0.95299 1.25061 1.20005 0.88648 0.87699 0.72089 1.90803 1.20671 1.85798 1.38482 1.23683 1.01546 0.91774 1.06132 1.22813 0.92814 0.98136 0.91007 1.19031 0.94778 0.94062 0.95662 1.20831 0.95175 0.98977 0.98643 1.20830 0.94681 0.95620 0.99123 1.20472 1.00812 1.00443 1.00163 1.19734 0.91860 0.89740 0.93218 1.83960 1.43317 1.44614 1.42536 1.21733 1.07510 1.13048 1.06470 0.88411 1.26599 0.96804 0.96398 1.02420 1.70188 1.17965 1.25381 1.42780 0.84661 0.78154 0.77644 0.75818 1.18413 1.19665 1.17705 1.21317 0.94930 1.02469 1.04968 0.90627 0.90193 0.90196 0.88788 0.89143 0.85450 0.74669 0.80052 0.82209 0.85860 0.83975 0.87348 0.91950 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.95 9.92 71.24 0.71 -1.24 16 2 C 0.11 2.76 7.26 43.52 0.32 3.08 16 3 N -0.34 -8.11 12.50 -46.68 -0.58 -8.69 16 4 N -0.36 -5.43 3.98 -367.68 -1.46 -6.89 16 5 C 0.09 0.37 11.44 127.77 1.46 1.83 16 6 C 0.14 1.78 10.96 84.28 0.92 2.71 16 7 C -0.34 -7.64 6.12 -20.10 -0.12 -7.77 16 8 C 0.43 11.52 6.11 26.84 0.16 11.68 16 9 O -0.48 -17.05 10.71 -4.52 -0.05 -17.09 16 10 C -0.21 -4.26 9.55 23.63 0.23 -4.03 16 11 C -0.03 -0.76 9.81 23.86 0.23 -0.53 16 12 C -0.04 -1.31 4.55 -20.16 -0.09 -1.40 16 13 C -0.12 -4.24 6.60 22.61 0.15 -4.10 16 14 C -0.08 -3.27 10.02 22.21 0.22 -3.05 16 15 C -0.20 -9.42 9.99 22.47 0.22 -9.20 16 16 C 0.10 5.57 6.64 22.53 0.15 5.72 16 17 O -0.24 -15.03 9.76 -22.88 -0.22 -15.26 16 18 C -0.41 -24.92 9.44 67.92 0.64 -24.28 16 19 H 0.10 5.43 5.29 -2.91 -0.02 5.42 16 20 C -0.03 -1.49 5.49 84.83 0.47 -1.03 16 21 N -0.92 -58.63 13.67 21.61 0.30 -58.33 16 22 Si 1.02 43.94 29.55 68.60 2.03 45.96 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 26 C -0.22 -10.10 8.88 22.71 0.20 -9.90 16 27 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.08 2.30 6.56 -2.39 -0.02 2.28 16 30 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.13 -0.35 8.14 -2.39 -0.02 -0.37 16 33 H 0.24 0.34 7.38 -2.91 -0.02 0.32 16 34 H 0.18 1.53 7.20 -2.91 -0.02 1.51 16 35 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 36 H 0.12 3.85 6.96 -2.91 -0.02 3.83 16 37 H 0.14 4.47 8.06 -2.91 -0.02 4.44 16 38 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 39 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 40 H 0.12 5.58 5.71 -2.91 -0.02 5.57 16 Total: -1.00 -88.21 346.56 6.95 -81.26 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 1.07 Total: 20.55 kcal Atomic # 6 Polarization: -47.38 SS G_CDS: 5.87 Total: -41.50 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -1.75 Total: -73.92 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.27 Total: -32.35 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -88.21 6.95 -81.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727744718.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.264 kcal (2) G-P(sol) polarization free energy of solvation -88.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds